Platinum Publications, February 27 – March 26, 2015

Ashley DeVine
Platinum Publications graphic

Platinum Publications are selected from articles by NCI at Frederick scientists published in 42 prestigious science journals. This list represents articles published during the time period shown above, as generated from PubMed.

Articles designated as Platinum Highlights are noteworthy articles selected by Dr. Craig Reynolds, associate director, National Cancer Institute, from among the most recently published Platinum Publications.

The Scientific Library maintains the NCI at Frederick-in-Print database, a collection of citations for journal articles authored by NCI at Frederick employees since 1997. 

Platinum highlight

denotes Platinum Highlight article. Click on the image to go to the Platinum Highlight article. 

 

BMC Bioinformatics graphic

 

 

 

BMC Bioinformatics

Song Y, Hua L, Shapiro BA, Wang JTL. Effective alignment of RNA pseudoknot structures using partition function posterior log-odds scores. BMC Bioinformatics 16:39, 2015.

 

The FASEB Journal graphic

 

 

 

FASEB

Chen X, Willette-Brown J, Wu XQ, Hu Y, Howard MZ, Hu YL, Oppenheim JJ. IKK alpha is required for the homeostasis of regulatory T cells and for the expansion of both regulatory and effector CD4 T cells. FASEB J 29(2):443-454, 2015.

 

JBC graphic

 

 

 

Journal of Biological Chemistry

Jang H, Abraham SJ, Chavan TS, Hitchinson B, Khavrutskii L, Tarasova NI, Nussinov R, Gaponenko V. Mechanisms of membrane binding of small GTPase K-Ras4B farnesylated hypervariable region. J Biol Chem 290(15):9465–9477, 2015.

 

Journal of Immunology graphic

 

 

 

Journal of Immunology

Apps R, Meng Z, Del Prete GQ, Lifson JD, Zhou M, Carrington M. Relative expression levels of the HLA class-I proteins in normal and HIV-infected cells. J Immunol 194(8):3594–3600, 2015.

Gordon SN, Doster MN, Kines RC, Keele BF, Brocca-Cofano E, Guan Y, Pegu P, Liyanage NP, Vaccari M, Cuburu N, Buck CB, Ferrari G, Montefiori D, Piatak M, Jr., Lifson JD, Xenophontos AM, Venzon D, Robert-Guroff M, Graham BS, Lowy DR, Schiller JT, Franchini G. Antibody to the gp120 V1/V2 loops and CD4+ and CD8+ T cell responses in protection from SIVmac251 vaginal acquisition and persistent viremia. J Immunol 193(12):6172–6183, 2014.

 

Journal of Infectious Diseases graphic

 

 

 

Journal of Infectious Diseases

Espinosa DA, Gutierrez GM, Rojas-Lopez M, Noe AR, Shi L, Tse SW, Sinnis P, Zavala F. Proteolytic cleavage of the Plasmodium falciparum circumsporozoite protein is a target of protective antibodies. J Infect Dis 2015[Epub ahead of print - This article is not yet available in the print journal.]

Gianella S, Redd AD, Grabowski MK, Tobian AA, Serwadda D, Newell K, Patel EU, Kalibbala S, Ssebbowa P, Gray RH, Quinn TC, Reynolds SJ. Vaginal cytomegalovirus shedding before and after initiation of antiretroviral therapy in Rakai, Uganda. J Infect Dis 2015[Epub ahead of print - This article is not yet available in the print journal.]

von Stockenstrom S, Odevall L, Lee E, Sinclair E, Bacchetti P, Killian M, Epling L, Shao W, Hoh R, Ho T, Faria NR, Lemey P, Albert J, Hunt P, Loeb L, Pilcher C, Poole L, Hatano H, Somsouk M, Douek D, Boritz E, Deeks SG, Hecht FM, Palmer S. Longitudinal genetic characterization reveals that cell proliferation maintains a persistent HIV type 1 DNA pool during effective HIV therapy. J Infect Dis 2015[Epub ahead of print - This article is not yet available in the print journal.]

 

Journal of Medicinal Chemistry graphic

 

 

 

Journal of Medicinal Chemistry

Garcia-Vallve S, Guasch L, Tomas-Hernandez S, Del Bas JM, Ollendorff V, Arola L, Pujadas G, Mulero M. Peroxisome proliferator-activated receptor gamma (PPARgamma) and ligand choreography: newcomers take the stage. J Med Chem 2015[Epub ahead of print - This article is not yet available in the print journal.]

Romagnoli R, Baraldi PG, Salvador MK, Prencipe F, Lopez-Cara C, Schiaffino Ortega S, Brancale A, Hamel E, Castagliuolo I, Mitola S, Ronca R, Bortolozzi R, Porcu E, Basso G, Viola G. Design, synthesis, in vitro, and in vivo anticancer and antiangiogenic activity of novel 3-arylaminobenzofuran derivatives targeting the colchicine site on tubulin. J Med Chem 58(7):3209–3222, 2015.

 

Virology Journal

 

 

 

Journal of Virology

Georgiev IS, Joyce MG, Yang Y, Sastry M, Zhang B, Baxa U, Chen RE, Druz A, Lees CR, Narpala S, Schon A, Van Galen J, Chuang GY, Gorman J, Harned A, Pancera M, Stewart-Jones GB, Cheng C, Freire E, McDermott AB, Mascola JR, Kwong PD. Single-chain soluble BG505.SOSIP gp140 trimers as structural and antigenic mimics of mature closed HIV-1 Env. J Virol 2015[Epub ahead of print - This article is not yet available in the print journal.]

O’Connor GM, Vivian JP, Gostick E, Pymm P, Lafont BA, Price DA, Rossjohn J, Brooks AG, McVicar DW. Peptide-dependent recognition of HLA-B*57:01 by KIR3DS1. J Virol 2015[Epub ahead of print - This article is not yet available in the print journal.]

 

Methods graphic

 

 

 

Methods in Molecular Biology

Chavali V, Nandi SS, Singh SR, Mishra PK. Generating double knockout mice to model genetic intervention for diabetic cardiomyopathy in humans. Methods Mol Biol 1194:385–400, 2014.

 

Nature graphic

 

 

 

Nature

Lawrence MS, Sougnez C, Lichtenstein L, Cibulskisl K, Lander E, Gabriel SB, Getz G, Ally A, Balasundaram M, Biroi I, Bowlby R, Brooks D, Butterfield YSN, Carlsen R, Cheng D, Chu A, Dhalla N, Guin R, Holt RA, Jones SJM, Lee D, Li HYI, Marra MA, Mayo M, Moore RA, Mungall AJ, Robertson AG, Schein JE, Sipahimalan P, Tam A, Thiessen N, Wong T, Protopopov A, Santoso N, Lee S, Parfenov M, Zhang JH, Mahadeshwar HS, Tang JB, Ren XJ, Seth S, Haseley P, Zeng D, Yang LX, Xu AW, Song XZ, Pantazi A, Bristow CA, Hadjipanayis A, Seidman J, Chin L, Park PJ, Kucherlapati R, Akbani R, Casasent T, Liu WB, Le Y, Mille G, Motter T, Weinstein J, Diao LX, Wang J, Fan YH, Lie JZ, Wang K, Auman JT, Balu S, Bodenheimer T, Buda E, Hayes DN, Hoadley KA, Hoyle AP, Jefferys SR, Jones CD, Kimes PK, Liu YF, Marron JS, Meng SW, Mieczkowski PA, Mose LE, Parker JS, Perou CM, Prins JF, Roach J, Shi Y, Simons JV, Singh D, Soloway MG, Tan DH, Veluvolu U, Walter V, Waring S, Wilkerson MD, Wu JY, Zhao N, Cherniack AD, Hammerman PS, Tward AD, Pedamallu CS, Saksena G, Jung J, Ojesina AI, Carter SL, Zack TI, Schumacher SE, Beroukhim R, Freeman SS, Meyerson M, Cho J, Chin L, Getz G, Noble MS, DiCara D, Zhang H, Heiman DI, Gehlenborg N, Voet D, Lin P, Frazer S, Stojanov P, Liu YC, Zou LH, Kim J, Sougnez C, Gabriel SB, Lawrence MS, Muzny D, Doddapaneni H, Kovar C, Reid J, Morton D, Han Y, Hale W, Chao H, Chang K, Drummond JA, Gibbs RA, Kakkar N, Wheeler D, Xi L, Ciriello G, Ladanyi M, Lee W, Ramirez R, Sander C, Shen R, Sinhal R, Weinhold N, Taylor BS, Aksoy BA, Dresdner G, Gao JJ, Gross B, Jacobsen A, Reva B, Schultz N, Sumer SO, Sun YC, Chan TA, Morris LG, Stuart J, Benz S, Ng S, Benz C, Yau C, Baylin SB, Cope L, Danilova L, Herman JG, Bootwalla M, Maglinte DT, Larid PW, Triche T, Weisenberger DJ, Van den Berg DJ, Agrawal N, Bishop J, Boutros PC, Bruce JP, Byers LA, Califano J, Carey TE, Chen Z, Cheng H, Chiosea SI, Cohen E, Diergaarde B, Egloff AM, El-Naggar AK, Ferris RL, Frederick MJ, Grandis JR, Guo Y, Haddad RI, Hammerman PS, Harris T, Hayes DN, Hui ABY, Lee JJ, Lippman SM, Liu FF, McHugh JB, Myers J, Ng PKS, Perez-Ordonez B, Pickering CR, Prystowsky M, Romkes M, Saleh AD, Sartor MA, Seethala R, Seiwert TY, Si H, Tward AD, Van Waes C, Waggott DM, Wiznerowicz M, Yarbrough WG, Zhang JX, Zuo ZX, Burnett K, Crain D, Gardner J, Lau K, Mallery D, Morris S, Lauskis JP, Penny R, Shelton C, Shelton T, Sherman M, Yena P, Black AD, Bowen J, Frick J, Gastier-Foster JM, Harper HA, Leraas K, Lichtenberg TM, Ramirez NC, Wise L, Zmuda E, Baboud J, Jensen MA, Kahn AB, Pihl TD, Pot DA, Srinivasan D, Walton JS, Wan YH, Burton RA, Davidsen T, Demchok JA, Eley G, Ferguson ML, Shaw KRM, Ozenberger BA, Sheth M, Sofia HJ, Tarnuzzer R, Wang ZN, Yang LM, Zenklusen JC, Saller C, Tarvi K, Chen C, Bollag R, Weinberger P, Golusinski W, Golusinski P, Ibbs M, Korski K, Mackiewicz A, Suchorska W, Szybiak B, Wiznerowicz M, Burnett K, Curley E, Gardner J, Mallery D, Penny R, Shelton T, Yena P, Beard C, Mitchell C, Sandusky G, Agrawal N, Ahn J, Bishop J, Califano J, Khan Z, Bruce JP, Hui ABY, Irish J, Liu FF, Perez-Ordonez B, Waldron J, Boutros PC, Waggott DM, Myers J, William WN, Lippman SM, Egea S, Gomez-Fernandez C, Herbert L, Bradford CR, Carey TE, Chepeha DB, Haddad AS, Jones TR, Komarck CM, Malakh M, McHugh JB, Moyer JS, Nguyen A, Peterson LA, Prince ME, Rozek LS, Sartor MA, Taylor EG, Walline HM, Wolf GT, Boice L, Chera BS, Funkhouser WK, Gulley ML, Hackman TG, Hayes DN, Hayward MC, Huang M, Rathmell WK, Salazar AH, Shockley WW, Shores CG, Thorne L, Weissler MC, Wrenn S, Zanation AM, Chiosea SI, Diergaarde B, Egloff AM, Ferris RL, Romkes M, Seethala R, Brown BT, Guo Y, Pham M, Yarbrough WG, Canc Genome Atlas N. Comprehensive genomic characterization of head and neck squamous cell carcinomas. Nature 517(7536):576–582, 2015.

 

Oncogene graphic

 

 

 

Oncogene

Jiang Y, Yan B, Lai W, Shi Y, Xiao D, Jia J, Liu S, Li H, Lu J, Li Z, Chen L, Chen X, Sun L, Muegge K, Cao Y, Tao Y. Repression of Hox genes by LMP1 in nasopharyngeal carcinoma and modulation of glycolytic pathway genes by HoxC8. Oncogene 2015[Epub ahead of print - This article is not yet available in the print journal.]

 

PLOS Computational Biology graphic

 

 

 

PLOS Computational Biology

Lengauer T, Nussinov R. How to write a presubmission inquiry. PLoS Comput Biol 11(2):e1004098, 2015.

 

PLOS One graphic

 

 

 

PLOS ONE

Arem H, Yu K, Xiong X, Moy K, Freedman ND, Mayne ST, Albanes D, Arslan AA, Austin M, Bamlet WR, Beane-Freeman L, Bracci P, Canzian F, Cotterchio M, Duell EJ, Gallinger S, Giles GG, Goggins M, Goodman PJ, Hartge P, Hassan M, Helzlsouer K, Henderson B, Holly EA, Hoover R, Jacobs EJ, Kamineni A, Klein A, Klein E, Kolonel LN, Li D, Malats N, Mannisto S, McCullough ML, Olson SH, Orlow I, Peters U, Petersen GM, Porta M, Severi G, Shu XO, Visvanathan K, White E, Yu H, Zeleniuch-Jacquotte A, Zheng W, Tobias GS, Maeder D, Brotzman M, Risch H, Sampson JN, Stolzenberg-Solomon RZ. Vitamin d metabolic pathway genes and pancreatic cancer risk. PLoS One 10(3):e0117574, 2015.

Atalla H, Lysnyansky I, Raviv Y, Rottem S. Mycoplasma gallisepticum inactivated by targeting the hydrophobic domain of the membrane preserves surface lipoproteins and induces a strong immune response. PLoS One 10(3):e0120462, 2015.

Chikaev AN, Bakulina AY, Burdick RC, Karpenko LI, Pathak VK, Ilyichev AA. Selection of peptide mimics of HIV-1 epitope recognized by neutralizing antibody VRC01. PLoS One 10(3):e0120847, 2015.

 

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Proceedings of the National Academy of Sciences

Hasumi H, Baba M, Hasumi Y, Lang M, Huang Y, Oh HF, Matsuo M, Merino MJ, Yao M, Ito Y, Furuya M, Iribe Y, Kodama T, Southon E, Tessarollo L, Nagashima K, Haines DC, Linehan WM, Schmidt LS. Folliculin-interacting proteins Fnip1 and Fnip2 play critical roles in kidney tumor suppression in cooperation with Flcn. Proc Natl Acad Sci U S A 112(13):E1624-E1631, 2015.

Rothenberger MK, Keele BF, Wietgrefe SW, Fletcher CV, Beilman GJ, Chipman JG, Khoruts A, Estes JD, Anderson J, Callisto SP, Schmidt TE, Thorkelson A, Reilly C, Perkey K, Reimann TG, Utay NS, Makamdop KN, Stevenson M, Douek DC, Haase AT, Schacker TW. Large number of rebounding/founder HIV variants emerge from multifocal infection in lymphatic tissues after treatment interruption. Proc Natl Acad Sci U S A 112(10):E1126–E1134, 2015.

Tripathi A, Vana PG, Chavan TS, Brueggemann LI, Byron KL, Tarasova NI, Volkman BF, Gaponenko V, Majetschak M. Heteromerization of chemokine (C-X-C motif) receptor 4 with alpha1A/B-adrenergic receptors controls alpha1-adrenergic receptor function. Proc Natl Acad Sci U S A 112(13):E1659–E1668, 2015.

 

Retrovirology graphic

 

 

 

Retrovirology

Coren LV, Trivett MT, Jain S, Ayala VI, Del Prete GQ, Ohlen C, Ott DE. Potent restriction of HIV-1 and SIVmac239 replication by African green monkey TRIM5 alpha. Retrovirology 12(1):11, 2015.

Mitra M, Singer D, Mano Y, Hritz J, Nam G, Gorelick RJ, Byeon IJL, Gronenborn AM, Iwatani Y, Levin JG. Sequence and structural determinants of human APOBEC3H deaminase and anti-HIV-1 activities. Retrovirology 12(1):3, 2015.

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