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  1. 1.   Machine Learning Informs RNA-Binding Chemical Space
  2. Yazdani, Kamyar; Jordan, Deondre; Yang,Mo; Fullenkamp,Chris; Schneekloth,Jay; Calabrese,Dave; Boer, Robert E; Hilimire, Thomas A; Allen, Timothy E H; Khan, Rabia T
  3. Angewandte Chemie (International ed. in English). 2022, Dec 30;
  1. 2.   PAX3-FOXO1 Establishes Myogenic Super Enhancers and Confers BET Bromodomain Vulnerability
  2. Gryder, Berkley E.; Yohe, Marielle E.; Chou, Hsien-Chao; Zhang, Xiaohu; Marques, Joana; Wachtel, Marco; Schaefer, Beat; Sen, Nirmalya; Song, Young; Gualtieri, Alberto; Pomella, Silvia; Rota, Rossella; Cleveland, Abigail; Wen, Xinyu; Sindiri, Sivasish; Wei, Jun S.; Barr, Frederic G.; Das, Sudipto; Andresson, Thorkell; Guha, Rajarshi; Lal-Nag, Madhu; Ferrer, Marc; Shern, Jack F.; Zhao, Keji; Thomas, Craig J.; Khan, Javed
  3. Cancer Discovery. 2017, Aug; 7(8): 884-899.
  1. 3.   Discovery of RNA Binding Small Molecules Using Small Molecule Microarrays
  2. Connelly, Colleen; Abulwerdi, Fardokht; Schneekloth, Jay
  3. Methods in Molecular Biology. 2017 1518: 157-175.
  1. 4.   Whole-Cell Cancer Vaccines Induce Large Antibody Responses to Carbohydrates and Glycoproteins
  2. Xia, Li; Schrump, David S.; Gildersleeve, Jeffrey
  3. Cell Chemical Biology. 2016, Dec 22; 23(12): 1515-1525.
  1. 5.   Dysregulation of mitotic machinery genes precedes genome instability during spontaneous pre-malignant transformation of mouse ovarian surface epithelial cells
  2. Urzua, U.; Ampuero, S.; Roby, K. F.; Owens, G. A.; Munroe, D. J.
  3. Bmc Genomics. 2016, 25-Oct; 17(Suppl 8): 728.
  1. 6.   Exon array analysis reveals neuroblastoma tumors have distinct alternative splicing patterns according to stage and MYCN amplification status
  2. Guo, X.; Chen, Q. R.; Song, Y. K.; Wei, J. S.; Khan, J.
  3. Bmc Medical Genomics. 2011, Apr; 4: 11.
  1. 7.   Anti-Human Embryonic Stem Cell Monoclonal Antibody Hesca-2 Binds to a Glycan Epitope Commonly Found on Carcinomas
  2. Shoreibah, M. G.; Jackson, C. L.; Price, P. W.; Meagher, R.; Godwin, A. K.; Cai, Q.; Gildersleeve, J. C.
  3. Stem Cells and Development. 2011, Mar; 20(3): 515-525.
  1. 8.   Gene Expression Profiles in a Rabbit Model of Systemic Lupus Erythematosus Autoantibody Production
  2. Rai, G.; Ray, S.; Milton, J.; Yang, J.; Ren, P.; Lempicki, R.; Mage, R. G.
  3. Journal of Immunology. 2010, Oct; 185(7): 4446-4456.
  1. 9.   Multiplex cytokine analysis technologies
  2. Lash, G. E.; Pinto, L. A.
  3. Expert Review of Vaccines. 2010, Oct; 9(10): 1231-1237.
  1. 10.   The MicroArray Quality Control (MAQC)-II study of common practices for the development and validation of microarray-based predictive models
  2. Shi, L. M.; Campbell, G.; Jones, W. D.; Campagne, F.; Wen, Z. N.; Walker, S. J.; Su, Z. Q.; Chu, T. M.; Goodsaid, F. M.; Pusztai, L.; Shaughnessy, J. D.; Oberthuer, A.; Thomas, R. S.; Paules, R. S.; Fielden, M.; Barlogie, B.; Chen, W. J.; Du, P.; Fischer, M.; Furlanello, C.; Gallas, B. D.; Ge, X. J.; Megherbi, D. B.; Symmans, W. F.; Wang, M. D.; Zhang, J.; Bitter, H.; Brors, B.; Bushel, P. R.; Bylesjo, M.; Chen, M. J.; Cheng, J.; Chou, J.; Davison, T. S.; Delorenzi, M.; Deng, Y. P.; Devanarayan, V.; Dix, D. J.; Dopazo, J.; Dorff, K. C.; Elloumi, F.; Fan, J. Q.; Fan, S. C.; Fan, X. H.; Fang, H.; Gonzaludo, N.; Hess, K. R.; Hong, H. X.; Huan, J.; Irizarry, R. A.; Judson, R.; Juraeva, D.; Lababidi, S.; Lambert, C. G.; Li, L.; Li, Y. N.; Li, Z.; Lin, S. M.; Liu, G. Z.; Lobenhofer, E. K.; Luo, J.; Luo, W.; McCall, M. N.; Nikolsky, Y.; Pennello, G. A.; Perkins, R. G.; Philip, R.; Popovici, V.; Price, N. D.; Qian, F.; Scherer, A.; Shi, T. L.; Shi, W. W.; Sung, J.; Thierry-Mieg, D.; Thierry-Mieg, J.; Thodima, V.; Trygg, J.; Vishnuvajjala, L.; Wang, S. J.; Wu, J. P.; Wu, Y. C.; Xie, Q. A.; Yousef, W. A.; Zhang, L. A.; Zhang, X. G.; Zhong, S.; Zhou, Y. M.; Zhu, S.; Arasappan, D.; Bao, W. J.; Lucas, A. B.; Berthold, F.; Brennan, R. J.; Buness, A.; Catalano, J. G.; Chang, C.; Chen, R.; Cheng, Y. Y.; Cui, J. A.; Czika, W.; Demichelis, F.; Deng, X. T.; Dosymbekov, D.; Eils, R.; Feng, Y.; Fostel, J.; Fulmer-Smentek, S.; Fuscoe, J. C.; Gatto, L.; Ge, W. G.; Goldstein, D. R.; Guo, L.; Halbert, D. N.; Han, J.; Harris, S. C.; Hatzis, C.; Herman, D.; Huang, J. P.; Jensen, R. V.; Jiang, R.; Johnson, C. D.; Jurman, G.; Kahlert, Y.; Khuder, S. A.; Kohl, M.; Li, J. Y.; Li, M. L.; Li, Q. Z.; Li, S.; Li, Z. G.; Liu, J.; Liu, Y.; Liu, Z. C.; Meng, L.; Madera, M.; Martinez-Murillo, F.; Medina, I.; Meehan, J.; Miclaus, K.; Moffitt, R. A.; Montaner, D.; Mukherjee, P.; Mulligan, G. J.; Neville, P.; Nikolskaya, T.; Ning, B. T.; Page, G. P.; Parker, J.; Parry, R. M.; Peng, X. J.; Peterson, R. L.; Phan, J. H.; Quanz, B.; Ren, Y.; Riccadonna, S.; Roter, A. H.; Samuelson, F. W.; Schumacher, M. M.; Shambaugh, J. D.; Shi, Q. A.; Shippy, R.; Si, S. Z.; Smalter, A.; Sotiriou, C.; Soukup, M.; Staedtler, F.; Steiner, G.; Stokes, T. H.; Sun, Q. L.; Tan, P. Y.; Tang, R.; Tezak, Z.; Thorn, B.; Tsyganova, M.; Turpaz, Y.; Vega, S. C.; Visintainer, R.; von Frese, J.; Wang, C.; Wang, E.; Wang, J. W.; Wang, W.; Westermann, F.; Willey, J. C.; Woods, M.; Wu, S. J.; Xiao, N. Q.; Xu, J.; Xu, L.; Yang, L.; Zeng, X. A.; Zhang, J. L.; Zhang, L.; Zhang, M.; Zhao, C.; Puri, R. K.; Scherf, U.; Tong, W. D.; Wolfinger, R. D.; Consortium, M.
  3. Pharmacogenomics Journal. 2010, Oct; S5-S16.
  1. 11.   Multidimensional glycan arrays for enhanced antibody profiling
  2. Zhang, Y. L.; Campbell, C.; Li, Q. A.; Gildersleeve, J. C.
  3. Molecular Biosystems. 2010, Sep; 6(9): 1583-1591.
  1. 12.   Effects of Hapten Density on the Induced Antibody Repertoire
  2. Li, Q. A.; Rodriguez, L. G.; Farnsworth, D. F.; Gildersleeve, J. C.
  3. Chembiochem. 2010, Aug 16; 11(12): 1686-1691.
  1. 13.   An Array-Based Method To Identify Multivalent Inhibitors
  2. Zhang, Y. L.; Li, Q. A.; Rodriguez, L. G.; Gildersleeve, J. C.
  3. Journal of the American Chemical Society. 2010, Jul 21; 132(28): 9653-9662.
  1. 14.   Characterizations and validations of novel antibodies toward translational research
  2. Williams, R.; Chung, J. Y.; Ylaya, K.; Whiteley, G.; Hewitt, S. M.
  3. Proteomics Clinical Applications. 2010, Jul; 4(6-7): 618-625.
  1. 15.   VIPR: A probabilistic algorithm for analysis of microbial detection microarrays
  2. Allred, A. F.; Wu, G. A.; Wulan, T.; Fischer, K. F.; Holbrook, M. R.; Tesh, R. B.; Wang, D.
  3. Bmc Bioinformatics. 2010, Jul; 11: 11.
  1. 16.   Simultaneous Recovery of DNA and RNA from Formalin-Fixed Paraffin-Embedded Tissue and Application in Epidemiologic Studies
  2. Huang, W. Y.; Sheehy, T. M.; Moore, L. E.; Hsing, A. W.; Purdue, M. P.
  3. Cancer Epidemiology Biomarkers & Prevention. 2010, Apr; 19(4): 973-977.
  1. 17.   High Throughput Screening of Normal and Neoplastic Tissue Samples
  2. Erickson, H. S.; Gannot, G.; Tangrea, M. A.; Chuaqui, R. F.; Gillespie, J. W.; Emmert-Buck, M. R.
  3. Combinatorial Chemistry & High Throughput Screening. 2010, Mar; 13(3): 253-267.
  1. 18.   Clinical Proteomic Applications of Formalin-Fixed Paraffin-Embedded Tissues
  2. Blonder, J.; Veenstra, T. D.
  3. Clinics in Laboratory Medicine. 2009 29(1): 101-113.
  1. 19.   Resolving conflicting data on expression of the Tn antigen and implications for clinical trials with cancer vaccines
  2. Li, Q.; Anver, M. R.; Butcher, D. O.; Gildersleeve, J. C.
  3. Molecular Cancer Therapeutics. 2009 8(4): 971-979.
  1. 20.   Microarrays with Varying Carbohydrate Density Reveal Distinct Subpopulations of Serum Antibodies
  2. Oyelaran, O.; Li, Q.; Farnsworth, D.; Gildersleeve, J. C.
  3. Journal of Proteome Research. 2009 8(7): 3529-3538.
  1. 21.   Seeking unique and common biological themes in multiple gene lists or datasets: pathway pattern extraction pipeline for pathway-level comparative analysis
  2. Yi, M.; Mudunuri, U.; Che, A.; Stephens, R. M.
  3. Bmc Bioinformatics. 2009 10 AR 200: 1-17.
  1. 22.   Improved procedure for direct coupling of carbohydrates to proteins via reductive amination
  2. Gildersleeve, J. C.; Oyelaran, O.; Simpson, J. T.; Allred, B.
  3. Bioconjugate Chemistry. 2008 19(7): 1485-1490.
  1. 23.   Experimental validation for quantitative protein network models
  2. Nishizuka, S.; Spurrier, B.
  3. Current Opinion in Biotechnology. 2008 19(1): 41-49.
  1. 24.   Expression of microRNAs and protein-coding genes associated with perineural invasion in prostate cancer
  2. Prueitt, R. L.; Yi, M.; Hudson, R. S.; Wallace, T. A.; Howe, T. M.; Yfantis, H. G.; Lee, D. H.; Stephens, R. M.; Liu, C. G.; Calin, G. A.; Croce, C. M.; Ambs, S.
  3. Prostate. 2008 68(11): 1152-1164.
  1. 25.   Antibody screening database for protein kinetic modeling
  2. Spurrier, B.; Washburn, F. L.; Asin, S.; Ramalingam, S.; Nishizuka, S.
  3. Proteomics. 2007, Sep; 7(18): 3259-3263.
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