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  1. 1.   Structural studies of vacuolar plasmepsins
  2. Bhaumik, P.; Gustchina, A.; Wlodawer, A.
  3. Biochimica Et Biophysica Acta-Proteins and Proteomics. 2012, Jan; 1824(1): 207-223.
  1. 2.   Structural Insights into the Activation and Inhibition of Histo-Aspartic Protease from Plasmodium falciparum
  2. Bhaumik, P.; Xiao, H. G.; Hidaka, K.; Gustchina, A.; Kiso, Y.; Yada, R. Y.; Wlodawer, A.
  3. Biochemistry. 2011, Oct; 50(41): 8862-8879.
  1. 3.   Isothiazolidinone (IZD) as a phosphoryl mimetic in inhibitors of the Yersinia pestis protein tyrosine phosphatase YopH
  2. Kim, S. E.; Bahta, M.; Lountos, G. T.; Ulrich, R. G.; Burke, T. R.; Waugh, D. S.
  3. Acta Crystallographica Section D-Biological Crystallography. 2011, Jul; 67: 639-645.
  1. 4.   Structure of human dual-specificity phosphatase 27 at 2.38 angstrom resolution
  2. Lountos, G. T.; Tropea, J. E.; Waugh, D. S.
  3. Acta Crystallographica Section D-Biological Crystallography. 2011, May; 67: 471-479.
  1. 5.   Tautomerism and Magnesium Chelation of HIV-1 Integrase Inhibitors: A Theoretical Study
  2. Liao, C. Z.; Nicklaus, M. C.
  3. Chemmedchem. 2010, Jul 5; 5(7): 1053-1066.
  1. 6.   Structure of RapA, a Swi2/Snf2 protein that recycles RNA polymerase during transcription
  2. Shaw, G.; Gan, J. H.; Zhou, Y. N.; Zhi, H. J.; Subburaman, P.; Zhang, R. G.; Joachimiak, A.; Jin, D. J.; Ji, X. H.
  3. Structure. 2008 16(9): 1417-1427.
  1. 7.   Crystallographic, thermodynamic, and molecular modeling studies of the mode of binding of oligosaccharides to the potent antiviral protein griffithsin
  2. Ziolkowska, N. E.; Shenoy, S. R.; O'Keefe, B. R.; McMahon, J. B.; Palmer, K. E.; Dwek, R. A.; Wormald, M. R.; Wlodawer, A.
  3. Proteins-Structure Function and Bioinformatics. 2007, May; 67(3): 661-670.
  1. 8.   Stereochemical restraints revisited: how accurate are refinement targets and how much should protein structures be allowed to deviate from them?
  2. Jaskolski, M.; Gilski, M.; Dauter, Z.; Wlodawer, A.
  3. Acta Crystallographica Section D-Biological Crystallography. 2007, May; 63: 611-620.
  1. 9.   Examination of acylated 4-aminopiperidine-4-carboxylic acid residues in the phosphotyrosyl+1 position of Grb2 SH2 domain-binding tripeptides
  2. Kang, S. U.; Choi, W. J.; Oishi, S.; Lee, K.; Karki, R. G.; Worthy, K. M.; Bindu, L. K.; Nicklaus, M. C.; Fisher, R. J.; Burke, T. R.
  3. Journal of Medicinal Chemistry. 2007, Apr; 50(8): 1978-1982.
  1. 10.   Lack of KIR3DS1 binding to MHC class I Bw4 tetramers in complex with CD8(+) T cell epitopes
  2. Gillespie, G. M. A.; Bashirova, A.; Dong, T.; McVicar, D. W.; Rowland-Jones, S. L; Carrington, M.
  3. Aids Research and Human Retroviruses. 2007, Mar; 23(3): 451-455.
  1. 11.   Structural dynamics of the cooperative binding of organic molecules in the human cytochrome P450 3A4
  2. Fishelovitch, D.; Hazan, C.; Shaik, S.; Wolfson, H. J.; Nussinov, R.
  3. Journal of the American Chemical Society. 2007, Feb; 129(6): 1602-1611.
  1. 12.   How different are structurally flexible and rigid binding sites? Sequence and structural features discriminating proteins that do and do not undergo conformational change upon ligand binding
  2. Gunasekaran, K.; Nussinov, R.
  3. Journal of Molecular Biology. 2007, Jan; 365(1): 257-273.
  1. 13.   Domain-swapped structure of the potent antiviral protein griffithsin and its mode of carbohydrate binding
  2. Ziolkowska, N. E.; O'Keefe, B. R.; Mori, T.; Zhu, C.; Giomarelli, B.; Vojdani, F.; Palmer, K. E.; McMahon, J. B.; Wlodawer, A.
  3. Structure. 2006, Jul; 14(7): 1127-1135.
  1. 14.   Distribution and three-dimensional structure of AIDS virus envelope spikes
  2. Zhu, P.; Liu, J.; Bess, J.; Chertova, E.; Lifson, J. D.; Grise, H.; Ofek, G. A.; Taylor, K. A.; Roux, K. H.
  3. Nature. 2006, JUN 15; 441(7095): 847-852.
  1. 15.   Purification, crystallization and preliminary X-ray diffraction of human S100A15
  2. Boeshans, K. M.; Wolf, R.; Voscopoulos, C.; Gillette, W.; Esposito, D.; Mueser, T. C.; Yuspa, S. H.; Ahvazi, B.
  3. Acta Crystallographica Section F-Structural Biology and Crystallization Communications. 2006, May; 62: 467-470.
  1. 16.   Structural studies of algal lectins with anti-HIV activity
  2. Ziolkowska, N. E.; Wlodawer, A.
  3. Acta Biochimica Polonica. 2006 53(4): 617-626.
  1. 17.   The RIO kinases: An atypical protein kinase family required for ribosome biogenesis and cell cycle progression
  2. Laronde-Leblanc, N.; Wlodawer, A.
  3. Biochimica Et Biophysica Acta-Proteins and Proteomics. 2005, DEC 30; 1754(1-2, Sp. Iss.): 14-24.
  1. 18.   Combinatorial docking approach for structure prediction of large proteins and multi-molecular assemblies
  2. Inbar, Y.; Benyamini, H.; Nussinov, R.; Wolfson, H. J.
  3. Physical Biology. 2005, DEC; 2(4, Sp. Iss.): S156-S165.
  1. 19.   Crystal structures for HIV-1 reverse transcriptase in complexes with three pyridinone derivatives: A new class of non-nucleoside inhibitors effective against a broad range of drug-resistant strains
  2. Himmel, D. M.; Das, K.; Clark, A. D.; Hughes, S. H.; Benjahad, A.; Oumouch, S.; Guillemont, J.; Coupa, S.; Poncelet, A.; Csoka, I.; Meyer, C.; Andries, K.; Nguyen, C. H.; Grierson, D. S.; Arnold, E.
  3. Journal of Medicinal Chemistry. 2005, DEC 1; 48(24): 7582-7591.
  1. 20.   A family portrait of the RIO kinases
  2. Laronde-Leblanc, N.; Wlodawer, A.
  3. Journal of Biological Chemistry. 2005, NOV 11; 280(45): 37297-37300.
  1. 21.   Crystal structures of a high-affinity macrocyclic peptide mimetic in complex with the Grb2 SH2 domain
  2. Phan, J.; Shi, Z. D.; Burke, T. R.; Waugh, D. S.
  3. Journal of Molecular Biology. 2005, OCT 14; 353(1): 104-115.
  1. 22.   Oligosaccharide preferences of beta 1,4-galactosyltransferase-I: Crystal structures of Met340His mutant of human beta 1,4-galactosyltransferase-I with a pentasaccharide and trisaccharides of the N-glycan moiety
  2. Ramasamy, V.; Ramakrishnan, B.; Boeggeman, E.; Ratner, D. M.; Seeberger, P. H.; Qasba, P. K.
  3. Journal of Molecular Biology. 2005, OCT 14; 353(1): 53-67.
  1. 23.   Intermediate states of ribonuclease III in complex with double-stranded RNA
  2. Gan, J. H.; Tropea, J. E.; Austin, B. P.; Court, D. L.; Waugh, D. S.; Ji, X. H.
  3. Structure. 2005, OCT; 13(10): 1435-1442.
  1. 24.   Reconstruction of the conserved beta-bulge in mammalian defensins using D-amino acids
  2. Xie, C.; Prahl, A.; Ericksen, B.; Wu, Z. B.; Zeng, P. Y.; Li, X. Q.; Lu, W. Y.; Lubkowski, J.; Lu, W. Y.
  3. Journal of Biological Chemistry. 2005, SEP 23; 280(38): 32921-32929.
  1. 25.   Is the critical role of loop 3 of Escherichia coli 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase in catalysis due to loop-3 residues arginine-84 and tryptophan-89? Site-directed mutagenesis, biochemical, and crystallographic studies
  2. Li, Y.; Blaszczyk, J.; Wu, Y.; Shi, G. B.; Ji, X. H.; Yan, H. G.
  3. Biochemistry. 2005, JUN 21; 44(24): 8590-8599.
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