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  1. 1.   Analysis of the progression of cervical cancer in a low-and-middle-income country: From pre-malignancy to invasive disease
  2. Robinson, Emma; Rodriguez, Isabel; Argueta, Victor; Xie, Yi; Lou, Hong; Milano, Rose; Lee, Hyo Jung; Burdett, Laurie; Mishra,Sambit; Yeager,Meredith; Mirabello, Lisa; Dean, Michael; Orozco, Roberto
  3. Tumour Virus Research. 2024, Dec 11; 200299.
  1. 2.   HPV oncogenes expressed from only one of multiple integrated HPV DNA copies drive clonal cell expansion in cervical cancer
  2. Yu,Lulu; Majerciak,Vladimir; Lobanov, Alexei; Mirza, Sameer; Band, Vimla; Liu, Haibin; Cam, Maggie; Hughes,Stephen; Lowy, Douglas R; Zheng, Zhi-Ming
  3. mBio. 2024, Apr 16; e0072924.
  1. 3.   Detection of the DNA binding of transcription factors in situ at the single-cell resolution in cultured cells by proximity ligation assay
  2. Ram,Babul; Dai,Chengkai
  3. STAR Protocols. 2023, Nov 01; 4(4): 102692.
  1. 4.   Revisiting and corrections to the annotated SRSF3 (SRp20) gene structure and RefSeq sequences from the human and mouse genomes
  2. Yu,Lulu; Majerciak,Vladimir; Jia, Rong; Zheng,Zhi-Ming
  3. Cell Insight. 2023, Apr ; 2(2): 100089.
  1. 5.   The genetic and evolutionary basis of gene expression variation in East Africans
  2. Kelly, Derek E; Ramdas, Shweta; Ma, Rong; Rawlings-Goss, Renata A; Grant, Gregory R; Ranciaro, Alessia; Hirbo, Jibril B; Beggs, William; Yeager,Meredith; Chanock, Stephen; Nyambo, Thomas B; Omar, Sabah A; Woldemeskel, Dawit; Belay, Gurja; Li, Hongzhe; Brown, Christopher D; Tishkoff, Sarah A
  3. Genome Biology. 2023, Feb 24; 24(1): 35.
  1. 6.   Endothelial Recovery in Bare Metal Stents and Drug-Eluting Stents on a Single-Cell Level
  2. Cornelissen, Anne; Guo, Liang; Fernandez, Raquel; Kelly,Michael; Janifer, Christine; Kuntz, Salome; Sakamoto, Atsushi; Jinnouchi, Hiroyuki; Sato, Yu; Paek, Ka Hyun; Kolodgie, Frank D; Romero, Maria E; Surve, Dipti; Virmani, Renu; Finn, Aloke V
  3. Arteriosclerosis, thrombosis, and vascular biology. 2021, Aug; 41(8): 2277-2292.
  1. 7.   Molecular Genomic Features Associated with in Vitro Response of the NCI-60 Cancer Cell Line Panel to Natural Products
  2. Krushkal, Julia; Negi, Simarjeet; Yee, Laura M; Evans,Jason; Grkovic,Tanja; Palmisano, Alida; Fang, Jianwen; Sankaran, Hari; McShane, Lisa M; Zhao, Yingdong; O'Keefe,Barry
  3. Molecular oncology. 2020, NOV 24;
  1. 8.   A small protein encoded by a putative lncRNA regulates apoptosis and tumorigenicity in human colorectal cancer cells
  2. Li, Xiao Ling; Pongor, Lorinc; Tang, Wei; Das,Sudipto; Muys, Bruna R; Jones, Matthew F; Lazar, Sarah B; Dangelmaier, Emily A; Hartford, Corrine Cr; Grammatikakis, Ioannis; Hao, Qinyu; Sun, Qinyu; Schetter, Aaron; Martindale, Jennifer L; Tang, BinWu; Jenkins, Lisa M; Robles, Ana I; Walker, Robert L; Ambs, Stefan; Chari,Raj; Shabalina, Svetlana A; Gorospe, Myriam; Hussain, Perwez S; Harris, Curtis C; Meltzer, Paul S; Prasanth, Kannanganattu V; Aladjem, Mirit I; Andresson,Thorkell; Lal, Ashish
  3. eLife. 2020, Oct 28; 9: pii: e53734..
  1. 9.   Dysregulated microRNAs in Hepatitis B Virus-Related Hepatocellular Carcinoma: Potential as Biomarkers and Therapeutic Targets
  2. Xu, Jinghang; An,Ping; Winkler,Cheryl; Yu, Yanyan
  3. Frontiers in oncology. 2020, JUL 28; 10
  1. 10.   Gene expression signatures: A tool for analysis of breast cancer prognosis and therapy
  2. Latha, Neetha Rajan; Rajan, Arathi; Nadhan, Revathy; Achyutuni, Sarada; Sengodan,Satheesh; Hemalatha, Sreelatha Krishnakumar; Varghese, Geetu Rose; Thankappan, Ratheeshkumar; Krishnan, Neethu; Patra, Dipyaman; Warrier, Arathy; Srinivas, Priya
  3. Critical reviews in oncology/hematology. 2020, JUL; 151
  1. 11.   Epigenome-wide DNA methylation analysis of small cell lung cancer cell lines suggests potential chemotherapy targets
  2. Krushkal, Julia; Silvers,Thomas; Reinhold, William C; Sonkin, Dmitriy; Vural, Suleyman; Connelly, John; Varma, Sudhir; Meltzer, Paul S; Kunkel, Mark; Rapisarda,Annamaria; Evans, David; Pommier, Yves; Teicher, Beverly A
  3. Clinical epigenetics. 2020, Jun 25; 12(1): 93.
  1. 12.   Integration of proteomics with CT-based qualitative and radiomic features in high-grade serous ovarian cancer patients: an exploratory analysis
  2. Beer, Lucian; Sahin, Hilal; Bateman, Nicholas W; Blazic, Ivana; Vargas, Hebert Alberto; Veeraraghavan, Harini; Kirby,Justin; Fevrier-Sullivan,Brenda; Freymann,John; Jaffe, C Carl; Brenton, James; Miccó, Maura; Nougaret, Stephanie; Darcy, Kathleen M; Maxwell, G Larry; Conrads, Thomas P; Huang, Erich; Sala, Evis
  3. European radiology. 2020, Apr 06; pii: 10.1007/s00330-020-06755-3.
  1. 13.   Lentiviral gene therapy for X-linked chronic granulomatous disease
  2. Kohn, Donald B; Booth, Claire; Kang, Elizabeth M; Pai, Sung-Yun; Shaw, Kit L; Santilli, Giorgia; Armant, Myriam; Buckland, Karen F; Choi, Uimook; De Ravin, Suk See; Dorsey, Morna J; Kuo, Caroline Y; Leon-Rico, Diego; Rivat, Christine; Izotova, Natalia; Gilmour, Kimberly; Snell, Katie; Dip, Jinhua Xu-Bayford; Darwish, Jinan; Morris, Emma C; Terrazas, Dayna; Wang, Leo D; Bauser, Christopher A; Paprotka, Tobias; Kuhns,Doug; Gregg, John; Raymond, Hayley E; Everett, John K; Honnet, Geraldine; Biasco, Luca; Newburger, Peter E; Bushman, Frederic D; Grez, Manuel; Gaspar, H Bobby; Williams, David A; Malech, Harry L; Galy, Anne; Thrasher, Adrian J
  3. Nature medicine. 2020, Jan 27; pii: 10.1038/s41591-019-0735-5.
  1. 14.   Differential Expression of the Transcription Factor GATA3 Specifies Lineage and Functions of Innate Lymphoid Cells
  2. Zhong, Chao; Zheng, Mingzhu; Cui, Kairong; Martins, Andrew J; Hu, Gangqing; Li, Dan; Tessarollo,Lino; Kozlov,Serguei; Keller,Jonathan; Tsang, John S; Zhao, Keji; Zhu, Jinfang
  3. Immunity. 2020, JAN 14; 52(1): 83-+.
  1. 15.   Temporal analysis of mRNA expression profiles in Orientia infected C3HeB/FeJ mouse
  2. Chao, Chien-Chung; Yang, Ruoting; Zhang, Zhiwen; Belinskaya, Tatyana; Chan, Chye-Teik; Miller, Stacy-Ann; Hammamieh, Rasha; Jett, Marti; Ching, Wei-Mei
  3. BMC microbiology. 2020, Jan 06; 20(1): 3.
  1. 16.   Improved Retinal Organoid Differentiation by Modulating Signaling Pathways Revealed by Comparative Transcriptome Analyses with Development In Vivo
  2. Brooks, Matthew J; Chen, Holly Y; Kelley, Ryan A; Mondal, Anupam K; Nagashima,Kunio; De Val Alda,Natalia; Li, Tiansen; Chaitankar, Vijender; Swaroop, Anand
  3. Stem cell reports. 2019, Nov 12; 13(5): 891-905.
  1. 17.   Molecular alterations induced by Yersinia pestis, dengue virus and Staphylococcal enterotoxin B under severe stress
  2. Muhie, Seid; Campbell,Ross; Gautam, Aarti; Hammamieh, Rasha; Cummings, Christiano; Jett, Marti
  3. Brain, behavior, and immunity. 2019, AUG; 80: 725-741.
  1. 18.   Integrating data and knowledge to identify functional modules of genes: a multilayer approach
  2. Liang, Lifan; Chen,Vicky; Zhu, Kunju; Fan, Xiaonan; Lu, Xinghua; Lu, Songjian
  3. BMC bioinformatics. 2019, May 02; 20(1): 225.
  1. 19.   An admixture mapping meta-analysis implicates genetic variation at 18q21 with asthma susceptibility in Latinos
  2. Gignoux, Chris R; Torgerson, Dara G; Pino-Yanes, Maria; Uricchio, Lawrence H; Galanter, Joshua; Roth, Lindsey A; Eng, Celeste; Hu, Donglei; Nguyen, Elizabeth A; Huntsman, Scott; Mathias, Rasika A; Kumar, Rajesh; Rodriguez-Santana, Jose; Thakur, Neeta; Oh, Sam S; McGarry, Meghan; Moreno-Estrada, Andres; Sandoval, Karla; Winkler, Cheryl; Seibold, Max A; Padhukasahasram, Badri; Conti, David V; Farber, Harold J; Avila, Pedro; Brigino-Buenaventura, Emerita; Lenoir, Michael; Meade, Kelley; Serebrisky, Denise; Borrell, Luisa N; Rodriguez-Cintron, William; Thyne, Shannon; Joubert, Bonnie R; Romieu, Isabelle; Levin, Albert M; Sienra-Monge, Juan-Jose; Del Rio-Navarro, Blanca Estela; Gan, Weiniu; Raby, Benjamin A; Weiss, Scott T; Bleecker, Eugene; Meyers, Deborah A; Martinez, Fernando J; Gauderman, W James; Gilliland, Frank; London, Stephanie J; Bustamante, Carlos D; Nicolae, Dan L; Ober, Carole; Sen, Saunak; Barnes, Kathleen; Williams, L Keoki; Hernandez, Ryan D; Burchard, Esteban G
  3. Journal of Allergy and Clinical Immunology. 2019, Mar; 143(3): 957-969.
  1. 20.   Genotoxicity of amorphous silica nanoparticles: Status and prospects
  2. Yazdimamaghani, Mostafa; Moos, Philip J.; Dobrovolskaia, Marina; Ghandehari, Hamidreza
  3. Nanomedicine : nanotechnology, biology, and medicine. 2019, Feb; 16: 106-125.
  1. 21.   Integrated proteotranscriptomics of breast cancer reveals globally increased protein-mRNA concordance associated with subtypes and survival
  2. Tang, Wei; Zhou, Ming; Dorsey, Tiffany H; Prieto, DaRue A; Wang, Xin W; Ruppin, Eytan; Veenstra, Timothy D; Ambs, Stefan
  3. Genome medicine. 2018, Dec 03; 10(1): 94.
  1. 22.   SAMHD1 Impairs HIV-1 Gene Expression and Negatively Modulates Reactivation of Viral Latency in CD4(+) T Cells
  2. Antonucci, Jenna M.; Kim, Sun Hee; St Gelais, Corine; Bonifati, Serena; Li, Tai-Wei; Buzovetsky, Olga; Knecht, Kirsten M.; Duchon, Alice A.; Xiong, Yong; Musier-Forsyth, Karin; Wu, Li
  3. JOURNAL OF VIROLOGY. 2018, Aug ; 92(15):
  1. 23.   GENE EXPRESSION IN MULTIPLE REGIONS OF THE RAT BRAIN DURING CHRONIC NEUROPATHIC PAIN DEVELOPMENT: MRNA SEQUENCING ANALYSIS
  2. Clifford, John L.; Kumar, Raina; Srinivasan, Seshamalini; Dimitrov, George; Gautam, Aarti; Yang, Ruoting; Williams, Joshua; Workman, Emily; Chavez, Roger; Sosanya, Natasha; Cheppudira, Bopaiah; Christy, Robert; Hammamieh, Rasha
  3. JOURNAL OF NEUROTRAUMA. 2018, AUG; 35: A31-A31.
  1. 24.   ROLE OF OMEGA-3 FATTY ACID DEFICIENCY DIETS ON MICROBIOME CHANGES IN RAT MODELS OF BLAST TBI AND PSYCHOLOGICAL STRESS
  2. Gautam, Aarti; Demar, James; Chakraborty, Nabaraun; Kumar, Raina; Hoke, Allison V.; Rosenberger, John G.; Batuure, Andrew B.; Bloodgood, David J.; Wilder, Dolma M.; Sajja, Venkatasivasaisujith; Hammamieh, Rasha; Jett, Marti; Long, Joseph
  3. JOURNAL OF NEUROTRAUMA. 2018, AUG; 35: A70-A71.
  1. 25.   Spatial Control of Inducible Cre-Mediated Recombination Using Cyanine Photocages
  2. Gorka, Alexander; Yamamoto, Tsuyoshi; Zhu, Jianjian; Schnermann, Martin
  3. Chembiochem : a European journal of chemical biology. 2018, Jun 18; 19(12): 1239-1243.
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