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  1. 1.   Structural and mechanistic bases for resistance of the M66I capsid variant to lenacapavir
  2. Briganti, Lorenzo; Annamalai, Arun S; Bester, Stephanie M; Wei, Guochao; Andino-Moncada, Jonathan R; Singh, Satya P; Kleinpeter,Alexander; Tripathi, Meghna; Nguyen, Binh; Radhakrishnan, Rajalingam; Singh, Parmit K; Greenwood, Juliet; Schope, Lauren I; Haney, Reed; Huang, Szu-Wei; Freed, Eric O; Engelman, Alan N; Francis, Ashwanth C; Kvaratskhelia, Mamuka
  3. mBio. 2025, Apr 15; e0361324.
  1. 2.   A monomeric envelope glycoprotein cytoplasmic tail is sufficient for HIV-1 Gag lattice trapping and incorporation
  2. Groves, Nicholas S; Clark, Austin R; Aguilar, Rebekah S; Hikichi,Yuta; Kostenko, Anastasiia; Bruns, Merissa M; Aron, Alegra T; Freed,Eric; van Engelenburg, Schuyler B
  3. Journal of virology. 2025, Apr 15; e0210524.
  1. 3.   Elements in the 5' Untranslated Region of Viral RNA Important for HIV Gag Recognition and Cross-Packaging
  2. Cheng,Zetao; Nikolaitchik,Olga; Duchon,Alice; Rawson, Jonathan M O; Pathak,Vinay; Hu,Wei-Shau
  3. Viruses. 2025, Apr 10; 17(4): 551.
  1. 4.   Lenacapavir disrupts HIV-1 core integrity while stabilizing the capsid lattice
  2. Li,Chenglei; Burdick,Ryan; Siddiqui,Rokeya; Janaka, Sanath Kumar; Hsia,Ru-Ching; Hu, Wei-Shau; Pathak,Vinay
  3. Proceedings of the National Academy of Sciences of the United States of America. 2025, Apr 08; 122(14): e2420497122.
  1. 5.   Potent and broad HIV-1 neutralization in fusion peptide-primed SHIV-infected macaques
  2. Wang, Hua; Cheng, Cheng; Dal Santo, James L; Shen, Chen-Hsiang; Bylund, Tatsiana; Henry, Amy R; Howe, Colin A; Hwang, Juyun; Morano, Nicholas C; Morris, Daniel J; Pletnev, Sergei; Roark, Ryan S; Zhou, Tongqing; Hansen, Bryan T; Hoyt, Forrest H; Johnston, Timothy S; Wang, Shuyi; Zhang, Baoshan; Ambrozak, David R; Becker, Jordan E; Bender, Michael F; Changela, Anita; Chaudhary, Ridhi; Corcoran, Martin; Corrigan, Angela R; Foulds, Kathryn E; Guo, Yicheng; Lee, Myungjin; Li, Yingying; Lin, Bob C; Liu, Tracy; Louder, Mark K; Mandolesi, Marco; Mason, Rosemarie D; McKee, Krisha; Nair, Vinod; O'Dell, Sijy; Olia, Adam S; Ou, Li; Pegu, Amarendra; Raju, Nagarajan; Rawi, Reda; Roberts-Torres, Jesmine; Sarfo, Edward K; Sastry, Mallika; Schaub, Andrew J; Schmidt, Stephen D; Schramm, Chaim A; Schwartz, Cindi L; Smith, Sarah C; Stephens,Tyler; Stuckey, Jonathan; Teng, I-Ting; Todd, John-Paul; Tsybovsky,Yaroslav; Van Wazer, David J; Wang, Shuishu; Doria-Rose, Nicole A; Fischer, Elizabeth R; Georgiev, Ivelin S; Karlsson Hedestam, Gunilla B; Sheng, Zizhang; Woodward, Ruth A; Douek, Daniel C; Koup, Richard A; Pierson, Theodore C; Shapiro, Lawrence; Shaw, George M; Mascola, John R; Kwong, Peter D
  3. Cell. 2024, Oct 23;
  1. 6.   Kinetic Studies on the Interaction of HIV-1 Gag Protein with the HIV-1 RNA Packaging Signal
  2. Rink,Connie; Kroupa, Tomas; Rein,Alan; Datta,Siddhartha
  3. Viruses. 2024, Sep 25; 16(10): 1517.
  1. 7.   Guanylate-binding protein 5 antagonizes viral glycoproteins independently of furin processing
  2. Veler,Hana; Lun, Cheng Man; Waheed,Abdul; Freed,Eric
  3. mBio. 2024, Aug 30; e0208624.
  1. 8.   Design of soluble HIV-1 envelope trimers free of covalent gp120-gp41 bonds with prevalent native-like conformation
  2. Zhang, Peng; Gorman, Jason; Tsybovsky,Yaroslav; Lu, Maolin; Liu, Qingbo; Gopan, Vinay; Singh, Mamta; Lin, Yin; Miao, Huiyi; Seo, Yuna; Kwon, Alice; Olia, Adam S; Chuang, Gwo-Yu; Geng, Hui; Lai, Yen-Ting; Zhou, Tongqing; Mascola, John R; Mothes, Walther; Kwong, Peter D; Lusso, Paolo
  3. Cell Reports. 2024, Jul 18; 43(8): 114518.
  1. 9.   Cationic Residues of the HIV-1 Nucleocapsid Protein Enable DNA Condensation to Maintain Viral Core Particle Stability during Reverse Transcription
  2. Gien, Helena; Morse, Michael; McCauley, Micah J; Rouzina, Ioulia; Gorelick,Robert; Williams, Mark C
  3. Viruses. 2024, May 29; 16(6): 872.
  1. 10.   Ultrapotent Broadly Neutralizing Human-llama Bispecific Antibodies against HIV-1
  2. Xu, Jianliang; Zhou, Tongqing; McKee, Krisha; Zhang, Baoshan; Liu, Cuiping; Nazzari, Alexandra F; Pegu, Amarendra; Shen, Chen-Hsiang; Becker, Jordan E; Bender, Michael F; Chan, Payton; Changela, Anita; Chaudhary, Ridhi; Chen, Xuejun; Einav, Tal; Kwon, Young Do; Lin, Bob C; Louder, Mark K; Merriam, Jonah S; Morano, Nicholas C; O'Dell, Sijy; Olia, Adam S; Rawi, Reda; Roark, Ryan S; Stephens,Tyler; Teng, I-Ting; Tourtellott-Fogt, Emily; Wang, Shuishu; Yang, Eun Sung; Shapiro, Lawrence; Tsybovsky,Yaroslav; Doria-Rose, Nicole A; Casellas, Rafael; Kwong, Peter D
  3. Advanced Science (Weinheim, Baden-Wurttemberg, Germany). 2024, May 05; e2309268.
  1. 11.   The association between single-nucleotide polymorphisms within type 1 interferon pathway genes and human immunodeficiency virus type 1 viral load in antiretroviral-naïve participants
  2. Mørup, Sara Bohnstedt; Leung, Preston; Reilly, Cavan; Sherman,Brad; Chang,Weizhong; Milojevic, Maja; Milinkovic, Ana; Liappis, Angelike; Borgwardt, Line; Petoumenos, Kathy; Paredes, Roger; Mistry, Shweta S; MacPherson, Cameron R; Lundgren, Jens; Helleberg, Marie; Reekie, Joanne; Murray, Daniel D
  3. AIDS Research and Therapy. 2024, May 03; 21(1): 27.
  1. 12.   Autophagy Deregulation in HIV-1-Infected Cells Increases Extracellular Vesicle Release and Contributes to TLR3 Activation
  2. DeMarino, Catherine; Cowen, Maria; Williams, Anastasia; Khatkar, Pooja; Abulwerdi, Fardokht A; Henderson, Lisa; Denniss, Julia; Pleet, Michelle L; Luttrell, Delores R; Vaisman, Iosif; Liotta, Lance A; Steiner, Joseph; Le Grice, Stuart F J; Nath, Avindra; Kashanchi, Fatah
  3. Viruses. 2024, Apr 20; 16(4):
  1. 13.   Inhibition of HIV-1 release by ADAM metalloproteinase inhibitors
  2. Ireland, Joanna; Segura, Jason; Shi,Genbin; Buchwald, Julianna; Roth, Gwynne; Shen, Thomas Juncheng; Wang, Ruipeng; Ji,Xinhua; Fischer, Elizabeth R; Moir, Susan; Chun, Tae-Wook; Sun, Peter D
  3. Frontiers in Microbiology. 2024, Mar 20; 15: 1385775.
  1. 14.   N-Substituted Bicyclic Carbamoyl Pyridones: Integrase Strand Transfer Inhibitors that Potently Inhibit Drug-Resistant HIV-1 Integrase Mutants
  2. Mahajan,Pankaj; Smith,Steven; Li, Min; Craigie, Robert; Hughes,Stephen; Zhao,Xuezhi; Burke,Terrence
  3. ACS Infectious Diseases. 2024, Feb 12;
  1. 15.   Modeling and Analysis of HIV-1 Pol Polyprotein as a Case Study for Predicting Large Polyprotein Structures
  2. Hao,Ming; Imamichi,Tomozumi; Chang,Weizhong
  3. International Journal of Molecular Sciences. 2024, Feb 02; 25(3):
  1. 16.   Transcriptionally-active "defective" HIV-1 proviruses and their association with immunological non-response to antiretroviral therapy
  2. Scrimieri, Francesca; Bastian, Estella; Smith, Mindy; Rehm, Catherine A; Morse, Caryn; Kuruppu, Janaki; McLaughlin, Mary; Chang,Weizhong; Sereti, Irini; Kovacs, Joseph A; Lane, H Clifford; Imamichi, Hiromi
  3. The Journal of Infectious Diseases. 2024, Jan 16;
  1. 17.   HIV-1 Transcription Inhibition Using Small RNA-Binding Molecules
  2. Khatkar, Pooja; Mensah, Gifty; Ning, Shangbo; Cowen, Maria; Kim, Yuriy; Williams, Anastasia; Abulwerdi, Fardokht A; Zhao, Yunjie; Zeng, Chen; Le Grice, Stuart F J; Kashanchi, Fatah
  3. Pharmaceuticals (Basel, Switzerland). 2023, Dec 25; 17(1):
  1. 18.   Dihydroxyphenyl- and Heteroaromatic-Based Thienopyrimidinones to Tackle HIV-1 LEDGF/p75-Dependent IN Activity
  2. Tocco, Graziella; Canton, Serena; Laus, Antonio; Caboni, Pierluigi; Le Grice, Stuart F J; Tramontano, Enzo; Esposito, Francesca
  3. Molecules (Basel, Switzerland). 2023, Sep 19; 28(18):
  1. 19.   Neutral sphingomyelinase 2 is required for HIV-1 maturation
  2. Waheed, Abdul A; Zhu, Yanan; Agostino, Eva; Naing, Lwar; Hikichi, Yuta; Soheilian,Ferri; Yoo, Seung-Wan; Song, Yun; Zhang, Peijun; Slusher, Barbara S; Haughey, Norman J; Freed, Eric O
  3. Proceedings of the National Academy of Sciences of the United States of America. 2023, Jul 11; 120(28): e2219475120.
  1. 20.   Inhibition of neutral sphingomyelinase 2 impairs HIV-1 envelope formation and substantially delays or eliminates viral rebound
  2. Yoo, Seung-Wan; Waheed,Abdul; Deme, Pragney; Tohumeken, Sehmus; Rais, Rana; Smith, Matthew D; DeMarino, Catherine; Calabresi, Peter A; Kashanchi, Fatah; Freed,Eric; Slusher, Barbara S; Haughey, Norman J
  3. Proceedings of the National Academy of Sciences of the United States of America. 2023, Jul 11; 120(28): e2219543120.
  1. 21.   HIV-1 usurps transcription start site heterogeneity of host RNA polymerase II to maximize replication fitness
  2. Nikolaitchik,Olga; Islam,Mohammad Saiful; Kitzrow,Jonathan; Duchon,Alice; Cheng,Zetao; Liu, Yang; Rawson, Jonathan M O; Shao,Wei; Nikolaitchik, Maria; Kearney,Mary; Maldarelli,Frank; Musier-Forsyth, Karin; Pathak,Vinay; Hu,Wei-Shau
  3. Proceedings of the National Academy of Sciences of the United States of America. 2023, Jun 06; 120(23): e2305103120.
  1. 22.   Diverse Murine Vaccinations Reveal Distinct Antibody Classes to Target Fusion Peptide and Variation in Peptide Length to Improve HIV Neutralization
  2. Sastry, Mallika; Changela, Anita; Gorman, Jason; Xu, Kai; Chuang, Gwo-Yu; Shen, Chen-Hsiang; Cheng, Cheng; Geng, Hui; O'Dell, Sijy; Ou, Li; Rawi, Reda; Reveiz, Mateo; Stewart-Jones, Guillaume B E; Wang, Shuishu; Zhang, Baoshan; Zhou, Tongqing; Biju, Andrea; Chambers, Michael; Chen, Xuejun; Corrigan, Angela R; Lin, Bob C; Louder, Mark K; McKee, Krisha; Nazzari, Alexandra F; Olia, Adam S; Parchment, Danealle K; Sarfo, Edward K; Stephens,Tyler; Stuckey, Jonathan; Tsybovsky,Yaroslav; Verardi, Raffaello; Wang, Yiran; Zheng, Cheng-Yan; Chen, Yuling; Doria-Rose, Nicole A; McDermott, Adrian B; Mascola, John R; Kwong, Peter D
  3. Journal of Virology. 2023, Apr 26; e0160422.
  1. 23.   The Effect of Inositol Hexakisphosphate on HIV-1 Particle Production and Infectivity can be Modulated by Mutations that Affect the Stability of the Immature Gag Lattice
  2. Kleinpeter,Alex; Zhu, Yanan; Mallery, Donna L; Ablan,Sherimay; Chen, Long; Hardenbrook, Nathan; Saiardi, Adolfo; James, Leo C; Zhang, Peijun; Freed,Eric
  3. Journal of Molecular Biology. 2023, Apr 01; 435(11): 168037.
  1. 24.   The capsid lattice engages a bipartite NUP153 motif to mediate nuclear entry of HIV-1 cores
  2. Shen, Qi; Kumari, Sushila; Xu, Chaoyi; Jang, Sooin; Shi, Jiong; Burdick,Ryan; Levintov, Lev; Xiong, Qiancheng; Wu, Chunxiang; Devarkar, Swapnil C; Tian, Taoran; Tripler, Therese N; Hu, Yingxia; Yuan, Shuai; Temple, Joshua; Feng, Qingzhou; Lusk, C Patrick; Aiken, Christopher; Engelman, Alan N; Perilla, Juan R; Pathak,Vinay; Lin, Chenxiang; Xiong, Yong
  3. Proceedings of the National Academy of Sciences of the United States of America. 2023, Mar 28; 120(13): e2202815120.
  1. 25.   A Practical Approach to Bicyclic Carbamoyl Pyridones with Application to the Synthesis of HIV-1 Integrase Strand Transfer Inhibitors
  2. Mahajan,Pankaj; Smith,Steven; Hughes,Stephen; Zhao,Xue Zhi; Burke,Terrence
  3. Molecules (Basel, Switzerland). 2023, Feb 02; 28(3):
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