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  1. 1.   Kaposi's sarcoma-associated herpesvirus T cell responses in HIV seronegative individuals from rural Uganda
  2. Nalwoga, Angela; Roshan, Romin; Moore, Kyle; Marshall, Vickie; Miley, Wendell; Labo, Nazzarena; Nakibuule, Marjorie; Cose, Stephen; Rochford, Rosemary; Newton, Robert; Whitby,Denise
  3. Nature Communications. 2021, Dec 16; 12(1):
  1. 2.   A multiclade env-gag VLP mRNA vaccine elicits tier-2 HIV-1-neutralizing antibodies and reduces the risk of heterologous SHIV infection in macaques
  2. Zhang, Peng; Narayanan, Elisabeth; Liu, Qingbo; Tsybovsky, Yaroslav; Boswell, Kristin; Ding, Shilei; Hu, Zonghui; Follmann, Dean; Lin, Yin; Miao, Huiyi; Schmeisser, Hana; Rogers, Denise; Falcone, Samantha; Elbashir, Sayda M.; Presnyak, Vladimir; Bahl, Kapil; Prabhakaran, Madhu; Chen, Xuejun; Sarfo, Edward K.; Ambrozak, David R.; Gautam, Rajeev; Martin, Malcom A.; Swerczek, Joanna; Herbert, Richard; Weiss, Deborah; Misamore, Johnathan; Ciaramella, Giuseppe; Himansu, Sunny; Stewart-Jones, Guillaume; McDermott, Adrian; Koup, Richard A.; Mascola, John R.; Finzi, Andres; Carfi, Andrea; Fauci, Anthony S.; Lusso, Paolo
  3. Nature Medicine. 2021, Dec;
  1. 3.   The dynamic nature of the K-Ras/calmodulin complex can be altered by oncogenic mutations
  2. Abdelkarim, Hazem; Leschinsky, Nicholas; Jang, Hyunbum; Banerjee, Avik; Nussinov,Ruth; Gaponenko, Vadim
  3. Current Opinion in Structural Biology. 2021, Dec; 71: 164-170.
  1. 4.   Show your cap or be packaged into HIV-1
  2. Levin, Judith G.; Rein, Alan
  3. Proceedings of the National Academy of Sciences of The United States of America. 2021, Oct 5; 118(40):
  1. 5.   A high-resolution HLA reference panel capturing global population diversity enables multi-ancestry fine-mapping in HIV host response
  2. Luo, Yang; Kanai, Masahiro; Choi, Wanson; Li, Xinyi; Sakaue, Saori; Yamamoto, Kenichi; Ogawa, Kotaro; Gutierrez-Arcelus, Maria; Gregersen, Peter K.; Stuart, Philip E.; Elder, James T.; Forer, Lukas; Schoenherr, Sebastian; Fuchsberger, Christian; Smith, Albert V.; Fellay, Jacques; Carrington,Mary; Haas, David W.; Guo, Xiuqing; Palmer, Nicholette D.; Chen, Yii-Der Ida; Rotter, Jerome I.; Taylor, Kent D.; Rich, Stephen S.; Correa, Adolfo; Wilson, James G.; Kathiresan, Sekar; Cho, Michael H.; Metspalu, Andres; Esko, Tonu; Okada, Yukinori; Han, Buhm; McLaren, Paul J.; Raychaudhuri, Soumya
  3. Nature Genetics. 2021, Oct; 53(10): 1504-1516.
  1. 6.   Proteogenomic characterization of pancreatic ductal adenocarcinoma
  2. Cao, Liwei; Huang, Chen; Zhou, Daniel Cui; Hu, Yingwei; Lih, T. Mamie; Savage, Sara R.; Krug, Karsten; Clark, David J.; Schnaubelt, Michael; Chen, Lijun; Leprevost, Felipe da Veiga; Eguez, Rodrigo Vargas; Yang, Weiming; Pan, Jianbo; Wen, Bo; Dou, Yongchao; Jiang, Wen; Liao, Yuxing; Shi, Zhiao; Terekhanova, Nadezhda; Cao, Song; Lu, Rita Jui-Hsien; Li, Yize; Liu, Ruiyang; Zhu, Houxiang; Ronning, Peter; Wu, Yige; Wyczalkowski, Matthew A.; Easwaran, Hariharan; Danilova, Ludmila; Mer, Arvind Singh; Yoo, Seungyeul; Wang, Joshua M.; Liu, Wenke; Haibe-Kains, Benjamin; Thiagarajan,Mathangi; Jewell, Scott D.; Hostetter, Galen; Newton, Chelsea J.; Li, Qing Kay; Roehr, Michael H.; Fenyo, David; Wang, Pei; Nesvizhskii, Alexey; Mani, D. R.; Omenn, Gilbert S.; Boja, Emily S.; Mesri, Mehdi; Robles, Ana; Rodriguez, Henry; Bathe, Oliver F.; Chan, Daniel W.; Hruban, Ralph H.; Ding, Li; Zhang, Bing; Zhang, Hui
  3. Cell. 2021, Sep 16; 184(19): 5031-5052.e26.
  1. 7.   Application of CHyMErA Cas9-Cas12a combinatorial genome-editing platform for genetic interaction mapping and gene fragment deletion screening
  2. Aregger,Michael; Xing, Kun; Gonatopoulos Pournatzis,Thomas
  3. Nature Protocols . 2021, Sep 10; 16(10): 4722-4765.
  1. 8.   Laparoscopic cholecystectomy in a swine model using a novel near-infrared fluorescent IV dye (BL-760)
  2. Cho, Yu Jeong; Nam, So-Hyun; Oh, Eugene; Luciano,Michael; Lee, Choonghee; Shin, Il Hyung; Schnermann,Martin; Cha, Jaepyeong; Kim, Kwan Woo
  3. Lasers in surgery and medicine. 2021, Sep 07;
  1. 9.   Novel HOXD13 variants in syndactyly type 1b and type 1c, and a new spectrum of TP63-related disorders
  2. Patel,Rashmi; Singh, Subodh Kumar; Bhattacharya, Visweswar; Ali, Akhtar
  3. Journal of human genetics. 2021, Jul 28;
  1. 10.   Profiling SARS-CoV-2 HLA-I peptidome reveals T cell epitopes from out-of-frame ORFs
  2. Weingarten-Gabbay, Shira; Klaeger, Susan; Sarkizova, Siranush; Pearlman, Leah R.; Chen, Da-Yuan; Gallagher, Kathleen M. E.; Bauer, Matthew R.; Taylor, Hannah B.; Dunn, W. Augustine; Tarr, Christina; Sidney, John; Rachimi, Suzanna; Conway, Hasahn L.; Katsis, Katelin; Wang, Yuntong; Leistritz-Edwards, Del; Durkin, Melissa R.; Tomkins-Tinch, Christopher H.; Finkel, Yaara; Nachshon, Aharon; Gentili, Matteo; Rivera, Keith D.; Carulli, Isabel P.; Chea, Vipheaviny A.; Chandrashekar, Abishek; Bozkus, Cansu Cimen; Carrington,Mary; Bhardwaj, Nina; Barouch, Dan H.; Sette, Alessandro; Maus, Marcela; Rice, Charles M.; Clauser, Karl R.; Keskin, Derin B.; Pregibon, Daniel C.; Hacohen, Nir; Carr, Steven A.; Abelin, Jennifer G.; Saeed, Mohsan; Sabeti, Pardis C.
  3. CELL. 2021, Jul 22; 184(15): 3962-3980.e17.
  1. 11.   SARS-CoV-2: from its discovery to genome structure, transcription, and replication
  2. Castro Brant,Ayslan; Tian, Wei; Majerciak,Vladimir; Yang, Wei; Zheng,Zhi-Ming
  3. Cell & bioscience. 2021, Jul 19; 11(1):
  1. 12.   B-Raf autoinhibition in the presence and absence of 14-3-3
  2. Zhang,Mingzhen; Jang,Hyunbum; Li, Zhigang; Sacks, David B.; Nussinov,Ruth
  3. Structure. 2021, Jul 1; 29(7): 768-777.e2.
  1. 13.   TnIK Is a Therapeutic Target in Lung Squamous Cell Carcinoma and Regulates FAK Activation through Merlin
  2. Torres-Ayuso,Pedro; An, Elvira; Nyswaner,Katherine; Bensen,Ryan; Ritt,Daniel; Specht,Suzanne; Das,Sudipto; Andresson,Thorkell; Cachau,Raul; Liang, Roger J.; Ries,Amy; Robinson,Christina; Difilippantonio,Simone; Gouker,Brad; Gouker,Brad; Karim,Baktiar; Miller, Chad J.; Turk, Benjamin E.; Morrison,Deborah; Brognard,John
  3. Cancer Discovery. 2021, Jun; 11(6): 1411-1423.
  1. 14.   IL-21 and IFN alpha therapy rescues terminally differentiated NK cells and limits SIV reservoir in ART-treated macaques
  2. Harper, Justin; Huot, Nicolas; Micci, Luca; Tharp, Gregory; King, Colin; Rascle, Philippe; Shenvi, Neeta; Wang, Hong; Galardi, Cristin; Upadhyay, Amit A.; Villinger, Francois; Lifson,Jeffrey; Silvestri, Guido; Easley, Kirk; Jacquelin, Beatrice; Bosinger, Steven; Muller-Trutwin, Michaela; Paiardini, Mirko
  3. Nature communications. 2021, May 17; 12(1):
  1. 15.   Anti-V2 antibodies virus vulnerability revealed by envelope V1 deletion in HIV vaccine candidates
  2. de Castro, Isabela Silva; Gorini, Giacomo; Mason, Rosemarie; Gorman, Jason; Bissa, Massimiliano; Rahman, Mohammad A.; Arakelyan, Anush; Kalisz, Irene; Whitney, Stephen; Becerra-Flores, Manuel; Ni, Eric; Peachman, Kristina; Trinh, Hung; Read, Michael; Liu, Mei-Hue; Van Ryk, Donald; Paquin-Proulx, Dominic; Shubin, Zhanna; Tuyishime, Marina; Peele, Jennifer; Ahmadi, Mohammed S.; Verardi, Raffaello; Hill, Juliane; Beddall, Margaret; Nguyen, Richard; Stamos, James D.; Fujikawa, Dai; Min, Susie; Schifanella, Luca; Vaccari, Monica; Galli, Veronica; Doster, Melvin N.; Liyanage, Namal P. M.; Sarkis, Sarkis; Caccuri, Francesca; LaBranche, Celia; Montefiori, David C.; Tomaras, Georgia D.; Shen, Xiaoying; Rosati,Margherita; Felber, Barbara K.; Pavlakis,George; Venzon, David J.; Magnanelli, William; Breed, Matthew; Kramer, Josh; Keele, Brandon F.; Eller, Michael A.; Cicala, Claudia; Arthos, James; Ferrari, Guido; Margolis, Leonid; Robert-Guroff, Marjorie; Kwong, Peter D.; Roederer, Mario; Rao, Mangala; Cardozo, Timothy J.; Franchini, Genoveffa
  3. iScience. 2021, Feb 19; 24(2):
  1. 16.   FAM3D is essential for colon homeostasis and host defense against inflammation associated carcinogenesis
  2. Liang, Weiwei; Peng, Xinjian; Li, Qingqing; Wang, Pingzhang; Lv, Ping; Song, Quansheng; She, Shaoping; Huang, Shiyang; Chen,Keqiang; Gong, Wanghua; Yuan,Wuxing; Thovarai, Vishal; Yoshimura, Teizo; O'huigin, Colm; Trinchieri,Giorgio; Huang, Jiaqiang; Lin, Shuye; Yao, Xiaohong; Bian, Xiuwu; Kong, Wei; Xi, Jianzhong; Wang,Jiming; Wang, Ying
  3. Nature communications. 2020, NOV 20; 11(1): 5912.
  1. 17.   Pyrazole-Based Lactate Dehydrogenase Inhibitors with Optimized Cell Activity and Pharmacokinetic Properties
  2. Rai, Ganesha; Urban, Daniel J.; Mott, Bryan T.; Hu, Xin; Yang, Shyh-Ming; Benavides, Gloria A.; Johnson, Michelle S.; Squadrito, Giuseppe L.; Brimacombe, Kyle R.; Lee, Tobie D.; Cheff, Dorian M.; Zhu, Hu; Henderson, Mark J.; Pohida, Katherine; Sulikowski, Gary A.; Dranow, David M.; Kabir, Md; Shah, Pranav; Padilha, Elias; Tao, Dingyin; Fang, Yuhong; Christov, Plamen P.; Kim, Kwangho; Jana, Somnath; Muttil, Pavan; Anderson, Tamara; Kunda, Nitesh K.; Hathaway, Helen J.; Kusewitt, Donna F.; Oshima, Nobu; Cherukuri, Murali; Davies, Douglas R.; Norenberg, Jeffrey P.; Sklar, Larry A.; Moore, William J.; Dang, Chi; Stott,Gordon; Neckers, Leonard; Flint,Andrew; Darley-Usmar, Victor M.; Simeonov, Anton; Waterson, Alex G.; Jadhav, Ajit; Hall, Matthew D.; Maloney, David J.
  3. JOURNAL OF MEDICINAL CHEMISTRY. 2020, OCT 8; 63(19): 10984-11011.
  1. 18.   Increased Single-Spectrum Top-Down Protein Sequence Coverage in Trapping Mass Spectrometers with Chimeric Ion Loading
  2. Weisbrod, Chad R.; Anderson, Lissa C.; Greer, Joseph B.; Dehart,Caroline; Hendrickson, Christopher L.
  3. ANALYTICAL CHEMISTRY. 2020, SEP 15; 92(18): 12193-12200.
  1. 19.   Comparative clinical and genomic analysis of neurofibromatosis type 2-associated cranial and spinal meningiomas
  2. Pemov, Alexander; Dewan, Ramita; Hansen, Nancy F; Chandrasekharappa, Settara C; Ray-Chaudhury, Abhik; Jones,Kristine; Luo,Wen; Heiss, John D; Mullikin, James C; Chittiboina, Prashant; Stewart, Douglas R; Asthagiri, Ashok R
  3. Scientific reports. 2020, Jul 28; 10(1): 12563.
  1. 20.   Triple-Negative Breast Cancer Cells Exhibit Differential Sensitivity to Cardenolides from Calotropis gigantea
  2. Pederson, Petra J; Cai, Shengxin; Carver, Chase; Powell, Douglas R; Risinger, April L; Grkovic,Tanja; O'Keefe,Barry; Mooberry, Susan L; Cichewicz, Robert H
  3. Journal of natural products. 2020, JUL 24; 83(7): 2269-2280.
  1. 21.   Creating and screening natural product libraries
  2. Wilson,Brice; Thornburg,Chris; Henrich,Curtis; Grkovic,Tanja; O'Keefe,Barry
  3. Natural product reports. 2020, JUL 1; 37: 893-918.
  1. 22.   Multimodel preclinical platform predicts clinical response of melanoma to immunotherapy
  2. Pérez-Guijarro, Eva; Yang, Howard H; Araya, Romina E; El Meskini,Rajaa; Michael, Helen T; Vodnala, Suman Kumar; Marie, Kerrie L; Smith,Cari; Chin, Sung; Lam, Khiem C; Thorkelsson, Andres; Iacovelli,Anthony; Kulaga,Alan; Fon, Anyen; Michalowski, Aleksandra M; Hugo, Willy; Lo, Roger S; Restifo, Nicholas P; Sharan,Shyam; Van Dyke, Terry; Goldszmid, Romina S; Ohler,Zoe; Lee, Maxwell P; Day, Chi-Ping; Merlino, Glenn
  3. Nature medicine. 2020, Apr 13;
  1. 23.   Deep Proteomics Using Two Dimensional Data Independent Acquisition Mass Spectrometry
  2. Cho, Kyung-Cho; Clark, David J.; Schnaubelt, Michael; Teo, Guo Ci; Leprevost, Felipe Veiga; Bocik,William; Boja, Emily S.; Hiltke, Tara; Nesvizhskii, Alexey; Zhang, Hui
  3. ANALYTICAL CHEMISTRY. 2020, Mar 17; 92(6): 4217-4225.
  1. 24.   Leucine zipper transcription factor-like 1 binds adaptor protein complex-1 and 2 and participates in trafficking of transferrin receptor 1
  2. Promchan,Kanyarat; Natarajan,Ven
  3. PloS one. 2020, JAN 2; 15(1): e0226298.
  1. 25.   A Phase I Trial Using a Multitargeted Recombinant Adenovirus 5 (CEA/MUC1/Brachyury)-Based Immunotherapy Vaccine Regimen in Patients with Advanced Cancer
  2. Gatti-Mays, Margaret E; Redman, Jason M; Donahue, Renee N; Palena, Claudia; Madan, Ravi A; Karzai, Fatima; Bilusic, Marijo; Sater, Houssein Abdul; Marté, Jennifer L; Cordes, Lisa M; McMahon, Sheri; Steinberg, Seth M; Orpia,Alanvin; Burmeister, Andrea; Schlom, Jeffrey; Gulley, James L; Strauss, Julius
  3. The oncologist. 2019, Oct 08; pii: theoncologist.2019-0608..
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