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  1. 1.   Probabilistic single-particle cryo-EM ab initio 3D reconstruction in SIMPLE
  2. Van, Cong T S; Reboul, Cyril F; Caesar, Joseph J E; Meana-Pañeda, Rubén; Lountos,George; Deme, Justin C; Bryant, Owain J; Johnson, Steven; Piczak, Claire T; Valkov, Eugene; Lea, Susan M; Elmlund, Hans
  3. Acta Crystallographica. Section D, Structural biology. 2025, Aug 01;
  1. 2.   5hmC enhances PARP trapping and restores PARP inhibitor sensitivity in chemoresistant BRCA1/2-deficient cells
  2. Kharat, Suhas S; Mishra,Arun; Sengodan,Satheesh; Dierman, Dillon; Fox, Stephen D; Chazin, Walter J; Sharan,Shyam
  3. The Journal of Biological Chemistry. 2025, Jun 19; 110393.
  1. 3.   CRISPR screens and quantitative proteomics reveal remodeling of the aryl hydrocarbon receptor-driven proteome through PARP7 activity
  2. Gorelik, Andrii; Paulo, Joao A; Schroeter, Christina B; Lad, Melanie; Shurr, Abigail; Mastrokalou, Chara; Siddiqi, Samrah; Suyari, Osamu; Brognard,John; Walter, David; Matthews, Jason; Palmer, Timothy M; Gygi, Steven P; Ahel, Ivan
  3. Proceedings of the National Academy of Sciences of the United States of America. 2025, Jun 17; 122(24): e2424985122.
  1. 4.   Monotherapy with antibody 1C3 partially protects Ebola virus-exposed macaques
  2. Worwa, Gabriella; Davis, Carl W; Klim, Sarah E; Turcinovic, Jacquelyn; Agans, Krystle N; Borisevich, Viktoriya; Geisbert, Joan B; Cross, Robert W; Crane, Anya; Holbrook, Michael R; Sanchez-Lockhart, Mariano; Kugelman, Jeffrey R; Patino Galindo, Juan A; Geisbert, Thomas W; Ahmed, Rafi; Kuhn, Jens H; Ollmann Saphire, Erica; Palacios, Gustavo; Crozier,Ian
  3. Journal of Virology. 2025, Jun 10; e0029625.
  1. 5.   Mpox lesion counting with semantic and instance segmentation methods
  2. Jiang, Bohan; McNeil, Andrew J; Liu, Yihao; House, David W; Mbala-Kingebeni, Placide; Tshiani Mbaya,Olivier; Silaphet, Tyra; Dodd, Lori E; Cowen, Edward W; Nussenblatt, Veronique; Bonnett, Tyler; Chen, Ziche; Saknite, Inga; Dawant, Benoit M; Tkaczyk, Eric R
  3. Journal of Medical Imaging (Bellingham, Wash.). 2025, May; 12(3): 034506.
  1. 6.   A monomeric envelope glycoprotein cytoplasmic tail is sufficient for HIV-1 Gag lattice trapping and incorporation
  2. Groves, Nicholas S; Clark, Austin R; Aguilar, Rebekah S; Hikichi,Yuta; Kostenko, Anastasiia; Bruns, Merissa M; Aron, Alegra T; Freed,Eric; van Engelenburg, Schuyler B
  3. Journal of virology. 2025, Apr 15; e0210524.
  1. 7.   Nanoparticles may influence mast cells gene expression profiles without affecting their degranulation function
  2. Newton,Hannah; Cedrone,Edward; Grunberger, Jason; Xie,Shaojun; Zhao,Yongmei; Tran,Bao; Toms, Bradley; Xu, Weining; Plant-Hately, Alexander; Liptrott, Neill J; Dobrovolskaia,Marina
  3. Nanomedicine : nanotechnology, biology, and medicine. 2025, Apr 02; 102818.
  1. 8.   Duplicate entries in the Protein Data Bank: how to detect and handle them
  2. Wlodawer,Alexander; Dauter, Zbigniew; Rubach, Pawel; Minor, Wladek; Jaskolski, Mariusz; Jiang, Ziqiu; Jeffcott, William; Anosova, Olga; Kurlin, Vitaliy
  3. Acta Crystallographica. Section D, Structural Biology. 2025, Apr 01;
  1. 9.   HTLV-1 p13 Protein Hijacks Macrophage Polarization and Promotes T-Cell Recruitment
  2. Moles, Ramona; Omsland, Maria; Pise-Masison, Cynthia A; Subleski,Jeffrey; McVicar,Daniel; Sarkis, Sarkis; Gutowska, Anna; Schifanella, Luca; Doster, Melvin; Washington-Parks, Robyn; Ciminale, Vincenzo; Franchini, Genoveffa
  3. Viruses. 2025, Mar 26; 17(4): 471.
  1. 10.   Characterization of metabolic and imaging profiles in the diagnosis of succinate dehydrogenase- related hereditary pheochromocytomas and paragangliomas
  2. Hsueh, Jessica Y; Mendhiratta, Neil; Solomon, Julie; Miller, Matthew; Ryan, Beth; Ricketts, Christopher J; Vocke, Cathy D; Crooks, Daniel R; Schmidt,Laura; Merino, Maria; Malayeri, Ashkan A; Linehan, W Marston; Ball, Mark W
  3. Urologic Oncology. 2025, Feb 25;
  1. 11.   Olaparib in treatment-refractory isocitrate dehydrogenase 1 (IDH1)- and IDH2-mutant cholangiocarcinoma: Safety and antitumor activity from the phase 2 National Cancer Institute 10129 trial
  2. Cecchini, Michael; Pilat, Mary Jo; Uboha, Nataliya; Azad, Nilofer S; Cho, May; Davis, Elizabeth J; Ahnert, Jordi Rodon; Tinoco, Gabriel; Shapiro, Geoffrey I; Khagi, Simon; Powers, Benjamin; Spencer, Kristen; Groisberg, Roman; Drappatz, Jan; Chen, Li; Das,Bishu; Bao, Xun; Li, Jing; Narayan, Azeet; Vu, Dennis; Patel, Abhijit; Niger, Monica; Doroshow, Deborah; Durecki, Diane; Boerner, Scott A; Bindra, Ranjit; Ivy, Percy; Shyr, Derek; Shyr, Yu; LoRusso, Patricia M
  3. Cancer. 2025, Feb 15; 131(4): e35755.
  1. 12.   Use of mobile phones to collect data on COVID-19: phone access and participation rates, in Rakai, Uganda
  2. Ssekubugu, Robert; Ndyanabo, Anthony; Makumbi, Fredrick; Ekström, Anna Mia; Beres, Laura; Nalwoga Kigozi, Grace; Nakawooya, Hadijja; Ssekasanvu, Joseph; Wawer, Maria J; Nalugoda, Fred; Sewankambo, Nelson; Ssempijja,Victor; Nantume, Betty; Serwadda, David; Kigozi, Godfrey; Gray, Ronald H; Chang, Larry W; Grabowski, M Kate; Nordenstedt, Helena; Kagaayi, Joseph
  3. Global Health Action. 2024, Dec 31; 17(1): 2419160.
  1. 13.   Aberrant Wnt/ß-catenin signaling in the mesenchymal stem cells of LZTFL1-depleted mice leads to increased adipogenesis, with implications for obesity
  2. Badralmaa,Yunden; Natarajan,Ven
  3. The Journal of Biological Chemistry. 2024, Dec 09; 108057.
  1. 14.   Modulating the immunodominance hierarchy of immunoglobulin germline-encoded structural motifs targeting the influenza hemagglutinin stem
  2. Ataca, Sila; Sangesland, Maya; de Paiva Fróes Rocha, Rebeca; Torrents de la Peña, Alba; Ronsard, Larance; Boyoglu-Barnum, Seyhan; Gillespie, Rebecca A; Tsybovsky,Yaroslav; Stephens,Tyler; Moin, Syed M; Lederhofer, Julia; Creanga, Adrian; Andrews, Sarah F; Barnes, Ralston M; Rohrer, Daniel; Lonberg, Nils; Graham, Barney S; Ward, Andrew B; Lingwood, Daniel; Kanekiyo, Masaru
  3. Cell Reports. 2024, Nov 22; 43(12): 114990.
  1. 15.   Structure-based design of glycoprotein subunit vaccines for mumps
  2. Loomis, Rebecca J; Lai, Yen-Ting; Sowers, Sun B; Fisher, Brian; Derrien-Colemyn, Alexandrine; Ambrozak, David R; Tsybovsky,Yaroslav; Crooke, Stephen N; Latner, Donald R; Kong, Wing-Pui; Ruckwardt, Tracy J; Plotkin, Stanley A; Kwong, Peter D; Mascola, John R; Graham, Barney S; Hickman, Carole J; Stewart-Jones, Guillaume B E
  3. Proceedings of the National Academy of Sciences of the United States of America. 2024, Nov 19; 121(47): e2404053121.
  1. 16.   Extracellular Matrix Limits Nanoparticle Diffusion and Cellular Uptake in a Tissue-Specific Manner
  2. Cahn,Devorah; Stern, Alexa; Buckenmeyer,Michael; Wolf,Matthew; Duncan, Gregg A
  3. ACS Nano. 2024, Nov 05;
  1. 17.   Perplexing paradoxical reactions: navigating the complexity of protracted tuberculosis meningitis-a case report
  2. Gooding,Megan; Hammoud, Dima A; Epling, Brian; Rocco, Joseph; Laidlaw, Elizabeth; Kuriakose,Safia; Chaturvedi, Mansi; Galindo, Frances; Ma, Stella V; Mystakelis, Harry; Poole, April; Russo, Kelly; Shah, Maunank; Malone, Joseph L; Rupert,Adam; Sereti, Irini; Manion, Maura
  3. Frontiers in Immunology. 2024, Oct 31; 15: 1441945.
  1. 18.   Role of physicochemical properties in silica nanoparticle-mediated immunostimulation
  2. Grunberger, Jason William; Newton,Hannah; Donohue,Duncan; Dobrovolskaia,Marina; Ghandehari, Hamidreza
  3. Nanotoxicology. 2024, Oct 26; 1-19.
  1. 19.   Practical application of good participatory practices for trials of emerging pathogens: Developing materials for use in ACTIV-3, -3b, and ACTIV-associated COVID-19 trials
  2. Guerra-de-Blas, Paola Del Carmen; Marines-Price, Rubria; Milman, Olga; Deal,Danae; Marchand,Jon; Linton,Jessica; Meger, Sue; Rule, John; Holland, Thomas L; Kitonsa, Jonathan; Delph, Yvette
  3. Journal of Clinical and Translational Science. 2024, Oct 15; 8(1): e157.
  1. 20.   Immunological properties of silica nanoparticles: a structure-activity relationship study
  2. Grunberger, Jason William; Dobrovolskaia,Marina; Ghandehari, Hamidreza
  3. Nanotoxicology. 2024, Sep 16; 1-23.
  1. 21.   Glycemic Control in Diabetic Patients Improved Overall Lung Cancer Survival across Diverse Populations
  2. Wu, Yi-Hung; Luke,Brian; Wu, Xiao-Cheng; Lee, J Jack; Yi, Yong; Okpechi,Samuel; Gause,Barry; Mehta, Paras; Sherman, Steven I; Ochoa, Augusto; Dmitrovsky,Ethan; Liu,Xi
  3. JNCI Cancer Spectrum. 2024, Sep 12;
  1. 22.   Olaparib for childhood tumors harboring defects in DNA damage repair genes: arm H of the NCI-COG Pediatric MATCH trial
  2. Glade Bender, Julia L; Pinkney, Kerice; Williams,Mickey; Roy-Chowdhuri, Sinchita; Patton, David R; Coffey, Brent D; Reid, Joel M; Piao, Jin; Saguilig, Lauren; Alonzo, Todd A; Berg, Stacey L; Ramirez, Nilsa C; Fox, Elizabeth; Weigel, Brenda J; Hawkins, Douglas S; Mooney, Margaret M; Takebe, Naoko; Tricoli, James V; Janeway, Katherine A; Seibel, Nita L; Parsons, Donald W
  3. The Oncologist. 2024, May 30;
  1. 23.   RrA, an enzyme from Rhodospirillum rubrum, is a prototype of a new family of short-chain L-asparaginases
  2. Zhang,Di; Czapinska, Honorata; Bochtler, Matthias; Wlodawer,Alexander; Lubkowski,Jacek
  3. Protein Science : a publication of the Protein Society. 2024, Apr; 33(4): e4920.
  1. 24.   Complete Rescue of HTLV-1p12KO Infectivity by Depletion of Monocytes Together with NK and CD8+ T Cells
  2. Gutowska, Anna; Sarkis, Sarkis; Rahman, Mohammad Arif; Goldfarbmuren,Kate; Moles, Ramona; Bissa, Massimiliano; Doster, Melvin; Washington-Parks, Robyn; McKinnon, Katherine; Silva de Castro, Isabela; Schifanella, Luca; Franchini, Genoveffa; Pise-Masison, Cynthia A
  3. Pathogens (Basel, Switzerland). 2024, Mar 29; 13(4):
  1. 25.   Kinetically Controlled Polyelectrolyte Complex Assembly of microRNA-Peptide Nanoparticles toward Treating Mesothelioma
  2. Anderson,Caleb; Singh, Anand; Stephens,Tyler; Hoang, Chuong D; Schneider,Joel
  3. Advanced Materials (Deerfield Beach, Fla.). 2024, Mar 26; e2314367.
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