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  1. 1.   Noncanonical circRNA biogenesis driven by alpha and gamma herpesviruses
  2. Dremel, Sarah E; Koparde,Vishal; Arbuckle, Jesse H; Hogan, Chad H; Kristie, Thomas M; Krug, Laurie T; Conrad, Nicholas K; Ziegelbauer, Joseph M
  3. The EMBO Journal. 2025, Mar 03;
  1. 2.   Functional assays for the diagnosis of chronic granulomatous disease
  2. Long-Priel,Debra; Lau,Karen; Fink,Dani; Kuhns,Doug
  3. Journal of Immunological Methods. 2025, Jan 28; 113820.
  1. 3.   The differential interactomes of the KRAS splice variants identify BIRC6 as a ubiquitin ligase for KRAS4A
  2. Kochen Rossi, Juan; Nuevo-Tapioles, Cristina; O'Keefe, Rachel A; Hunkeler, Moritz; Schmoker, Anna M; Fissore-O'Leary, Mercedes; Su, Wenjuan; Ahearn, Ian M; Branco, Cristina; Cheong, Hakyung; Esposito,Dom; Clotea, Ioana; Ueberheide, Beatrix; Fischer, Eric S; Philips, Mark R
  3. Cell Reports. 2024, Dec 19; 44(1): 115087.
  1. 4.   Phosphorylation of P-stalk proteins defines the ribosomal state for interaction with auxiliary protein factors
  2. Filipek, Kamil; Blanchet, Sandra; Molestak, Eliza; Zaciura, Monika; Wu,Colin; Horbowicz-Drozdzal, Patrycja; Grela, Przemyslaw; Zalewski, Mateusz; Kmiecik, Sebastian; González-Ibarra, Alan; Krokowski, Dawid; Latoch, Przemyslaw; Starosta, Agata L; Molon, Mateusz; Shao, Yutian; Borkiewicz, Lidia; Michalec-Wawiórka, Barbara; Wawiórka, Leszek; Kubinski, Konrad; Socala, Katarzyna; Wlaz, Piotr; Cunningham, Kyle W; Green, Rachel; Rodnina, Marina V; Tchórzewski, Marek
  3. EMBO Reports. 2024, Oct 28;
  1. 5.   Guanylate-binding protein 5 antagonizes viral glycoproteins independently of furin processing
  2. Veler,Hana; Lun, Cheng Man; Waheed,Abdul; Freed,Eric
  3. mBio. 2024, Aug 30; e0208624.
  1. 6.   Prediction of differential Gag versus Env responses to a mosaic HIV-1 vaccine regimen by HLA class I alleles
  2. Nelson,George; van Duijn, Janine; Yuki,Yuko; Pau, Maria G; Tomaka, Frank; Lavreys, Ludo; DeRosa, Steven C; McElrath, M Juliana; Kirk, Gregory D; Michael, Nelson L; Haas, David W; Deeks, Steven G; Wolinsky, Steven; Walker, Bruce; Barouch, Dan H; Stieh, Daniel; Carrington, Mary
  3. Journal of Virology. 2024, Jul 24; e0028124.
  1. 7.   The Janus kinase 1 is critical for pancreatic cancer initiation and progression
  2. Shrestha, Hridaya; Rädler, Patrick D; Dennaoui, Rayane; Wicker, Madison N; Rajbhandari, Nirakar; Sun, Yunguang; Peck, Amy R; Vistisen, Kerry; Triplett, Aleata A; Beydoun, Rafic; Sterneck,Esta; Saur, Dieter; Rui, Hallgeir; Wagner, Kay-Uwe
  3. Cell Reports. 2024, May 10; 43(5): 114202.
  1. 8.   Endogenous EWSR1 Exists in Two Visual Modalities That Reflect Its Associations with Nucleic Acids and Concentration at Sites of Active Transcription
  2. Sundara Rajan, Soumya; Ebegboni, Vernon J; Pichling, Patricio; Ludwig, Katelyn R; Jones, Tamara L; Chari,Raj; Tran, Andy; Kruhlak, Michael J; Loncarek,Jadranka; Caplen, Natasha J
  3. Molecular and Cellular Biology. 2024, Mar 20; 44(3): 103-122.
  1. 9.   Matrin3 regulates mitotic spindle dynamics by controlling alternative splicing of CDC14B
  2. Muys, Bruna R; Shrestha, Roshan L; Anastasakis, Dimitrios G; Pongor, Lorinc; Li, Xiao Ling; Grammatikakis, Ioannis; Polash, Ahsan; Chari,Raj; Gorospe, Myriam; Harris, Curtis C; Aladjem, Mirit I; Basrai, Munira A; Hafner, Markus; Lal, Ashish
  3. Cell Reports. 2023, Mar 15; 42(3): 112260.
  1. 10.   Unique Structural Fold of LonBA Protease from Bacillus subtilis, a Member of a Newly Identified Subfamily of Lon Proteases
  2. Gustchina,Alla; Li,Mi; Andrianova, Anna G; Kudzhaev, Arsen M; Lountos,George; Sekula, Bartosz; Cherry,Scott; Tropea, Joseph E; Smirnov, Ivan V; Wlodawer,Alexander; Rotanova, Tatyana V
  3. International Journal of Molecular Sciences. 2022, Sep 28; 23(19):
  1. 11.   Systematic exploration of dynamic splicing networks reveals conserved multistage regulators of neurogenesis
  2. Han, Hong; Best, Andrew J; Braunschweig, Ulrich; Mikolajewicz, Nicholas; Li, Jack Daiyang; Roth, Jonathan; Chowdhury, Fuad; Mantica, Federica; Nabeel-Shah, Syed; Parada, Guillermo; Brown, Kevin R; O'Hanlon, Dave; Wei, Jiarun; Yao, Yuxi; Zid, Abdelrahman Abou; Comsa, Lim Caden; Jen, Mark; Wang, Jenny; Datti, Alessandro; Gonatopoulos Pournatzis,Thomas; Weatheritt, Robert J; Greenblatt, Jack F; Wrana, Jeffrey L; Irimia, Manuel; Gingras, Anne-Claude; Moffat, Jason; Blencowe, Benjamin J
  3. Molecular Cell. 2022, Jul 31; 82(16): 2982-2999.
  1. 12.   The CD8a hinge is intrinsically disordered with a dynamic exchange that includes proline cis-trans isomerization
  2. Chen,Xiang; Mirazee, Justin M; Skorupka,Kate; Matsuo,Hiroshi; Youkharibache, Philippe; Taylor, Naomi; Walters,Kylie
  3. Journal of Magnetic Resonance (San Diego, Calif. : 1997). 2022, May 13; 340: 107234.
  1. 13.   Flexible pri-miRNA structures enable tunable production of 5' isomiRs
  2. Bofill De Ros,Xavier; Hong,Zhenyi; Birkenfeld, Ben; Alamo-Ortiz,Sarangelica; Yang,Acong; Dai,Lisheng; Gu,Shuo
  3. RNA Biology. 2022, Jan; 19(1): 279-289.
  1. 14.   Structure-guided bifunctional molecules hit a DEUBAD-lacking hRpn13 species upregulated in multiple myeloma
  2. Lu, Xiuxiu; Sabbasani, Venkata R.; Osei-Amponsa, Vasty; Evans, Christine N.; King, Julianna C.; Tarasov, Sergey G.; Dyba, Marzena; Das, Sudipto; Chan, King C.; Schwieters, Charles D.; Choudhari, Sulbha; Fromont, Caroline; Zhao, Yongmei; Tran, Bao; Chen, Xiang; Matsuo, Hiroshi; Andresson, Thorkell; Chari, Raj; Swenson, Rolf E.; Tarasova, Nadya I.; Walters, Kylie J.
  3. Nature Communications. 2021, Dec 16; 12(1):
  1. 15.   RNF219 attenuates global mRNA decay through inhibition of CCR4-NOT complex-mediated deadenylation
  2. Poetz, Fabian; Corbo,Joshua; Levdansky,Yevgen; Spiegelhalter, Alexander; Lindner, Doris; Magg, Vera; Lebedeva, Svetlana; Schweiggert, Jorg; Schott, Johanna; Valkov,Eugene; Stoecklin, Georg
  3. Nature Communications. 2021, Dec 9; 12(1):
  1. 16.   Sinularamides A-G, Terpenoid-Derived Spermidine and Spermine Conjugates with Casitas B-Lineage Lymphoma Proto-Oncogene B (CbI-b) Inhibitory Activities from a Sinularia sp. Soft Coral
  2. Jiang, Wei; Wang,Dongdong; Wilson,Brice; Voeller, Donna; Bokesch, Heidi R.; Smith,Emily; Lipkowitz, Stanley; O'Keefe,Barry; Gustafson,Kirk
  3. Journal of natural products. 2021, Jun 25; 84(6): 1831-1837.
  1. 17.   TnIK Is a Therapeutic Target in Lung Squamous Cell Carcinoma and Regulates FAK Activation through Merlin
  2. Torres-Ayuso,Pedro; An, Elvira; Nyswaner,Katherine; Bensen,Ryan; Ritt,Daniel; Specht,Suzanne; Das,Sudipto; Andresson,Thorkell; Cachau,Raul; Liang, Roger J.; Ries,Amy; Robinson,Christina; Difilippantonio,Simone; Gouker,Brad; Gouker,Brad; Karim,Baktiar; Miller, Chad J.; Turk, Benjamin E.; Morrison,Deborah; Brognard,John
  3. Cancer Discovery. 2021, Jun; 11(6): 1411-1423.
  1. 18.   SMAC Mimetic/IAP Inhibitor Birinapant Enhances Radiosensitivity of Glioblastoma Multiforme
  2. Cerna, David; Lim, Bora; Adelabu, Yusuf; Yoo, Stephen; Carter, Donna; Fahim, Ahmed; Mitsuuchi, Yasuhiro; Teicher, Beverly A.; Bernhard, Eric; Coleman, C. Norman; Takebe, Naoko; Ahmed, Mansoor M.
  3. Radiation Research. 2021, Jun; 195(6): 549-560.
  1. 19.   Leveraging Topological Events in Tracking Graphs for Understanding Particle Diffusion
  2. McDonald, T.; Shrestha,Rebika; Yi, X.; Bhatia, H.; Chen,De; Goswami,Debanjan; Pascucci, V.; Turbyville,Tommy; Bremer, P. -T.
  3. COMPUTER GRAPHICS FORUM. 2021, Jun; 40(3): 251-262.
  1. 20.   Specificity of the HIV-1 Protease on Substrates Representing the Cleavage Site in the Proximal Zinc-Finger of HIV-1 Nucleocapsid Protein
  2. Motyan, Janos Andras; Miczi, Mario; Oroszlan, Stephen; Tozser, Jozsef
  3. Viruses. 2021, Jun; 13(6):
  1. 21.   Normal Mode Analysis of KRas4B Reveals Partner Specific Dynamics
  2. Eren, Meryem; Tuncbag, Nurcan; Jang,Hyunbum; Nussinov,Ruth; Gursoy, Attila; Keskin, Ozlem
  3. The journal of physical chemistry. B. 2021, May 27; 125(20): 5210-5221.
  1. 22.   Modifications in an Emergency: The Role of N1-Methylpseudouridine in COVID-19 Vaccines
  2. Nance,Kellie; Meier,Jordan
  3. ACS central science. 2021, May 26; 7(5): 748-756.
  1. 23.   Mechanism of Viral Glycoprotein Targeting by Membrane-Associated RING-CH Proteins
  2. Lun, Cheng Man; Waheed,Abdul; Majadly, Alhlam; Powell, Nicole; Freed, Eric O.
  3. mBio. 2021, Mar 16; 12(2):
  1. 24.   Across the Hall from Pioneers
  2. Rein,Alan
  3. Viruses . 2021, Mar; 13(3):
  1. 25.   Amyloid Oligomers: A Joint Experimental/Computational Perspective on Alzheimer's Disease, Parkinson's Disease, Type II Diabetes, and Amyotrophic Lateral Sclerosis
  2. Nguyen, Phuong H.; Ramamoorthy, Ayyalusamy; Sahoo, Bikash R.; Zheng, Jie; Faller, Peter; Straub, John E.; Dominguez, Laura; Shea, Joan-Emma; Dokholyan, Nikolay; De Simone, Alfonso; Ma, Buyong; Nussinov,Ruth; Najafi, Saeed; Ngo, Son Tung; Loquet, Antoine; Chiricotto, Mara; Ganguly, Pritam; McCarty, James; Li, Mai Suan; Hall, Carol; Wang, Yiming; Miller, Yifat; Melchionna, Simone; Habenstein, Birgit; Timr, Stepan; Chen, Jiaxing; Hnath, Brianna; Strodel, Birgit; Kayed, Rakez; Lesne, Sylvain; Wei, Guanghong; Sterpone, Fabio; Doig, Andrew J.; Derreumaux, Philippe
  3. Chemical Reviews. 2021, Feb 24; 121(4): 2545-2647.
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