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  1. 1.   How to recover from a bad start: adaptation of HIV-1 transcription start site mutants during serial passaging in culture
  2. Nikolaitchik,Olga; Chameettachal,Akhil; Islam,Mohammad Saiful; Keele,Brandon; Delviks-Frankenberry, Krista; Pathak,Vinay; Hu,Wei-Shau; Cheng,Zetao
  3. Journal of Virology. 2025, May 07; e0015925.
  1. 2.   Imaging the cellular response to an antigen tagged interstrand crosslinking agent
  2. Bellani, Marina A; Huang, Jing; Zhang, Jing; Gali,Himabindu; Thazhathveetil, Arun Kalliat; Pokharel, Durga; Majumdar, Ishani; Shaik, Althaf; Seidman, Michael M
  3. DNA Repair. 2023, Jun 09; 128: 103525.
  1. 3.   HIV-1 usurps transcription start site heterogeneity of host RNA polymerase II to maximize replication fitness
  2. Nikolaitchik,Olga; Islam,Mohammad Saiful; Kitzrow,Jonathan; Duchon,Alice; Cheng,Zetao; Liu, Yang; Rawson, Jonathan M O; Shao,Wei; Nikolaitchik, Maria; Kearney,Mary; Maldarelli,Frank; Musier-Forsyth, Karin; Pathak,Vinay; Hu,Wei-Shau
  3. Proceedings of the National Academy of Sciences of the United States of America. 2023, Jun 06; 120(23): e2305103120.
  1. 4.   Heat Shock Protein Family A Member 1 Promotes Intracellular Amplification of Hepatitis B Virus Covalently Closed Circular DNA
  2. Tang, Liudi; An,Ping; Zhao, Qiong; Winkler,Cheryl; Chang, Jinhong; Guo, Ju-Tao
  3. Journal of Virology. 2022, Dec 15; e0126122.
  1. 5.   Adaptation of HIV-1/HIV-2 Chimeras with Defects in Genome Packaging and Viral Replication
  2. Rawson, Jonathan M O; Nikolaitchik,Olga; Yoo, Jennifer A; Somoulay, Xayathed; Brown, Matthew A; Mbuntcha Bogni, Franck S; Pathak,Vinay; Soheilian,Ferri; Slack, Ryan L; Sarafianos, Stefan G; Hu,Wei-Shau
  3. mBio. 2022, Aug 29; e0222022.
  1. 6.   Enhanced Transmissibility and Decreased Virulence of HIV-1 CRF07_BC May Explain Its Rapid Expansion in China
  2. Cheng, Zetao; Yan, Huanchang; Li, Qingmei; Ablan,Sherimay; Kleinpeter,Alex; Freed,Eric; Wu, Hao; Dzakah, Emmanuel Enoch; Zhao, Jianhui; Han, Zhigang; Wang, Haiying; Tang, Shixing
  3. Microbiology Spectrum. 2022, Jun 21; e0014622.
  1. 7.   Conformational dynamics of the hepatitis B virus pre-genomic RNA on multiple time scales: implications for viral replication
  2. Olenginski, Lukasz T; Kasprzak,Wojciech; Bergonzo, Christina; Shapiro,Bruce; Dayie, Theodore K
  3. Journal of Molecular Biology. 2022, May 17; 434(18): 167633.
  1. 8.   MYC assembles and stimulates topoisomerases 1 and 2 in a "topoisome"
  2. Das, Subhendu K.; Kuzin, Vladislav; Cameron, Donald P.; Sanford, Suzanne; Jha, Rajiv Kumar; Nie, Zuqin; Rosello, Marta Trullols; Holewinski,Ronald; Andresson,Thorkell; Wisniewski, Jan; Natsume, Toyoaki; Price, David H.; Lewis, Brian A.; Kouzine, Fedor; Levens, David; Baranello, Laura
  3. Molecular Cell. 2022, Jan 6; 82(1): 140-158. e12.
  1. 9.   Spatial and Functional Organization of Human Papillomavirus Replication Foci in the Productive Stage of Infection
  2. Khurana, Simran; Markowitz,Tovah; Kabat, Juraj; McBride, Alison A
  3. mBio. 2021, Dec 21; 12(6): e0268421.
  1. 10.   A Combination of M50I and V151I Polymorphic Mutations in HIV-1 Subtype B Integrase Results in Defects in Autoprocessing
  2. Yang, Jun; Hao,Ming; Khan, Muhammad A; Rehman,Tauseef; Highbarger,Helene; Chen,Qian; Goswami,Suranjana; Sherman,Brad; Rehm, Catherine A; Dewar,Robin; Chang,Weizhong; Imamichi, Tomozumi
  3. Viruses. 2021, Nov 22; 13(11):
  1. 11.   Serum and Cervicovaginal Fluid Antibody Profiling in Herpes Simplex Virus (HSV) Seronegative Recipients of the HSV529 Vaccine
  2. Wang, Kening; Dropulic, Lesia; Bozekowski, Joel; Pietz, Harlan L; Jegaskanda, Sinthujan; Dowdell, Kennichi; Vogel, Joshua S; Garabedian, Doreen; Oestreich, Makinna; Nguyen, Hanh; Ali, Mir A; Lumbard, Keith; Hunsberger, Sally; Reifert, Jack; Haynes, Winston A; Sawyer, Jaymie R; Shon, John C; Daugherty, Patrick S; Cohen, Jeffrey I
  3. The Journal of Infectious Diseases. 2021, Nov 16; 224(9): 1509-1519.
  1. 12.   The Role of Ku70 as a Cytosolic DNA Sensor in Innate Immunity and Beyond
  2. Sui,Hongyan; Hao,Ming; Chang,Weizhong; Imamichi,Tomozumi
  3. Frontiers in cellular and infection microbiology. 2021, Oct 21; 11: 761983.
  1. 13.   Replication of the Mammalian Genome by Replisomes Specific for Euchromatin and Heterochromatin
  2. Zhang, Jing; Bellani, Marina A.; Huang, Jing; James, Ryan C.; Pokharel, Durga; Gichimu, Julia; Gali,Himabindu; Stewart, Grant; Seidman, Michael M.
  3. Frontiers in Cell and Developmental Biology. 2021, AUG 31; 9
  1. 14.   Energetic and structural features of SARS-CoV-2 N-protein co-assemblies with nucleic acids
  2. Zhao, Huaying; Nguyen, Ai; Li, Yan; Adao, Regina C.; Valkov,Eugene; Patterson, George H.; Piszczek, Grzegorz; Schuck, Peter
  3. iScience. 2021, Jun 25; 24(6):
  1. 15.   The epigenetic regulator LSH maintains fork protection and genomic stability via MacroH2A deposition and RAD51 filament formation
  2. Xu,Xiaoping; Ni, Kai; He,Yafeng; Ren, Jianke; Sun, Chongkui; Liu, Yie; Aladjem, Mirit; Burkett, Sandra; Finney, Richard; Ding, Xia; Sharan,Shyam; Muegge,Kathrin
  3. Nature communications. 2021, Jun 10; 12(1):
  1. 16.   IL-21 and IFN alpha therapy rescues terminally differentiated NK cells and limits SIV reservoir in ART-treated macaques
  2. Harper, Justin; Huot, Nicolas; Micci, Luca; Tharp, Gregory; King, Colin; Rascle, Philippe; Shenvi, Neeta; Wang, Hong; Galardi, Cristin; Upadhyay, Amit A.; Villinger, Francois; Lifson,Jeffrey; Silvestri, Guido; Easley, Kirk; Jacquelin, Beatrice; Bosinger, Steven; Muller-Trutwin, Michaela; Paiardini, Mirko
  3. Nature communications. 2021, May 17; 12(1):
  1. 17.   Safety, Antitumor Activity, and Biomarker Analysis in a Phase I Trial of the Once-daily Wee1 Inhibitor Adavosertib (AZD1775) in Patients with Advanced Solid Tumors
  2. Takebe, Naoko; Naqash, Abdul Rafeh; Coyne, Geraldine O'Sullivan; Kummar, Shivaani; Do, Khanh; Bruns, Ashley; Juwara,Lamin; Zlott, Jennifer; Rubinstein, Larry; Piekarz, Richard; Sharon, Elad; Streicher, Howard; Mittra, Arjun; Miller, Sarah B.; Ji,Jay; Wilsker,Deborah; Kinders,Robert; Parchment,Ralph; Chen,Li; Chang,Ting-Chia; Das,Biswajit; Mugundu, Ganesh; Doroshow, James H.; Chen, Alice P.
  3. CLINICAL CANCER RESEARCH. 2021, Apr 16; 27(14): 3834-3844.
  1. 18.   Antibody-mediated depletion of viral reservoirs is limited in SIV-infected macaques treated early with antiretroviral therapy
  2. Swanstrom,Adrienne; Immonen,Taina; Oswald,Kelli; Pyle,Cathi; Thomas,James; Bosche,Bj; Silipino,Lorna; Hull,Mike; Newman,Laura; Coalter, Vicky; Wiles,Adam; Wiles,Rodney; Kiser,Jacob; Morcock,David; Shoemaker,Rebecca; Fast,Randy; Breed,Matthew; Kramer,Josh; Donohue,Duncan; Malys,Tyler; Fennessey,Christine; Trubey,Charles; Deleage,Claire; Estes, Jacob D.; Lifson,Jeffrey; Keele,Brandon; Del Prete,Greg
  3. The Journal of Clinical Investigation. 2021, Mar 15; 131(6):
  1. 19.   A stable immature lattice packages IP6 for HIV capsid maturation
  2. Mallery, Donna L.; Kleinpeter,Alex; Renner, Nadine; Faysal, K. M. Rifat; Novikova, Mariia; Kiss, Leo; Wilson, Miranda S. C.; Ahsan, Bilal; Ke, Zunlong; Briggs, John A. G.; Saiardi, Adolfo; Bocking, Till; Freed,Eric; James, Leo C.
  3. Science Advances. 2021, Mar 10; 7(11):
  1. 20.   Potential for Virus Endogenization in Humans through Testicular Germ Cell Infection: the Case of HIV
  2. Mahe, Dominique; Matusali, Giulia; Deleage,Claire; Alvarenga, Raquel L. L. S.; Satie, Anne-Pascale; Pagliuzza, Amelie; Mathieu, Romain; Lavoue, Sylvain; Jegou, Bernard; de Franca, Luiz R.; Chomont, Nicolas; Houzet, Laurent; Rolland, Antoine D.; Dejucq-Rainsford, Nathalie
  3. JOURNAL OF VIROLOGY. 2020, Dec; 94(24):
  1. 21.   HIV-1 viremia not suppressible by antiretroviral therapy can originate from large T cell clones producing infectious virus
  2. Halvas, Elias K; Joseph, Kevin W; Brandt, Leah D; Guo,Amber; Sobolewski, Michele D; Jacobs, Jana L; Tumiotto, Camille; Bui, John K; Cyktor, Joshua C; Keele,Brandon; Morse, Gene D; Bale, Michael J; Shao,Wei; Kearney,Mary; Coffin, John M; Rausch,Jason; Wu,Xiaolin; Hughes,Stephen; Mellors, John W
  3. The Journal of clinical investigation. 2020, NOV 2; 130(11): 5847-5857.
  1. 22.   Unpaired Guanosines in the 5' Untranslated Region of HIV-1 RNA Act Synergistically to Mediate Genome Packaging
  2. Nikolaitchik,Olga; Somoulay, Xayathed; Rawson,Jonathan; Yoo, Jennifer A; Pathak,Vinay; Hu,Wei-Shau
  3. Journal of virology. 2020, NOV; 94(21): pii: JVI.00439-20.
  1. 23.   Exploring role of 5hmC as potential marker of chemoresistance
  2. Kharat,Suhas; Sharan,Shyam
  3. MOLECULAR & CELLULAR ONCOLOGY. 2020, Oct 22; 7(6): 1827904.
  1. 24.   Epigenetic Regulation of DNA Repair Pathway Choice by MacroH2A1 Splice Variants Ensures Genome Stability
  2. Sebastian, Robin; Hosogane, Eri K; Sun, Eric G; Tran, Andy D; Reinhold, William C; Burkett,Sandra; Sturgill, David M; Gudla, Prabhakar R; Pommier, Yves; Aladjem, Mirit I; Oberdoerffer, Philipp
  3. Molecular cell. 2020, SEP 3; 79(5): 836-+.
  1. 25.   HIV-1 Integrase Inhibitors that are active against Drug-Resistant Integrase Mutants
  2. Smith,Steven; Zhao,Xue Zhi; Passos, Dario Oliveira; Lyumkis, Dmitry; Burke,Terrence; Hughes,Stephen
  3. Antimicrobial agents and chemotherapy. 2020, SEP; 64(9):
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