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  1. 1.   Basophil activation test to BNT162b2 lacks specificity for predicting allergic reactions to the mRNA vaccine
  2. Kee, Sydney Ann; Olivera, Ana; Chatman, Lindsay; Khalid, Muhammad B; Li, Min Jenny; Chu,Eric; Zektser, Ellen; Laky, Karen; Frischmeyer-Guerrerio, Pamela A
  3. The Journal of Allergy and Clinical Immunology. Global. 2025, Aug; 4(3): 100495.
  1. 2.   FMRP drives mRNP targets into translationally silenced complexes
  2. Kurosaki, Tatsuaki; Cho, Hana; Abshire, Elizabeth T; Pröschel, Christoph; Mitsutomi, Shuhei; Sato, Hanae; Simko, Eric A J; Fraser, Christopher S; Sakano, Hitomi; Maquat, Lynne E
  3. Molecular Cell. 2025, Jul 08;
  1. 3.   Identification of a Novel Intracellular Function of the Secreted Ribonuclease RNASE1 in Inhibiting Gene Expression
  2. Singh, Ragini; Archibald, Ahlina; Li, Xiao Ling; Kumar, Ravi; Das,Shaoli; Pehrsson,Erica; Zhao,Patrick; Wen,Xinyu; Chari,Rajagopal; Grammatikakis, Ioannis; Lal, Ashish
  3. Molecular and Cellular Biology. 2025, Jun 17; 1-12.
  1. 4.   Unraveling the mechanism of RNA duplex unwinding by DEAD-box helicase DDX3X: Insights into Cooperativity and roles of protomers
  2. Dharavath, Sudhaker; Song, He; Ji, Xinhua
  3. Biochemical and Biophysical Research Communications. 2025, Jun 13; 777: 152206.
  1. 5.   How to recover from a bad start: adaptation of HIV-1 transcription start site mutants during serial passaging in culture
  2. Nikolaitchik,Olga; Chameettachal,Akhil; Islam,Mohammad Saiful; Keele,Brandon; Delviks-Frankenberry, Krista; Pathak,Vinay; Hu,Wei-Shau; Cheng,Zetao
  3. Journal of Virology. 2025, May 07; e0015925.
  1. 6.   Mpox lesion counting with semantic and instance segmentation methods
  2. Jiang, Bohan; McNeil, Andrew J; Liu, Yihao; House, David W; Mbala-Kingebeni, Placide; Tshiani Mbaya,Olivier; Silaphet, Tyra; Dodd, Lori E; Cowen, Edward W; Nussenblatt, Veronique; Bonnett, Tyler; Chen, Ziche; Saknite, Inga; Dawant, Benoit M; Tkaczyk, Eric R
  3. Journal of Medical Imaging (Bellingham, Wash.). 2025, May; 12(3): 034506.
  1. 7.   Machine learning-augmented molecular dynamics simulations (MD) reveal insights into the disconnect between affinity and activation of ZTP riboswitch ligands
  2. Fullenkamp, Christopher; Mehdi, Shams; Jones, Christopher; Tenney, Logan; Pichling, Patricio; Prestwood, Peri R; Ferré-D'Amaré, Adrian R; Tiwary, Pratyush; Schneekloth,John
  3. Angewandte Chemie (International ed. in English). 2025, May 01; e202505971.
  1. 8.   Elements in the 5' Untranslated Region of Viral RNA Important for HIV Gag Recognition and Cross-Packaging
  2. Cheng,Zetao; Nikolaitchik,Olga; Duchon,Alice; Rawson, Jonathan M O; Pathak,Vinay; Hu,Wei-Shau
  3. Viruses. 2025, Apr 10; 17(4): 551.
  1. 9.   Repression of ZNFX1 by LncRNA ZFAS1 mediates tobacco-induced pulmonary carcinogenesis
  2. Xi, Sichuan; Shan, Jigui; Wu, Xinwei; Wang, Haitao; Zhang, Mary R; Oyetunji, Shakirat; Xu, Hong; Xiao, Zuoxiang; Tolunay, Tuana; Carr, Shamus R; Hoang, Chuong D; Schrump, David S
  3. Cellular & Molecular Biology Letters. 2025, Apr 10; 30(1): 44.
  1. 10.   Harnessing molecular recognition for small molecule-mediated, reversible photochemical control over mRNA translation
  2. Parmar,Shaifaly; Tenney, Logan; Liang, Xiao; Routzahn,John; Sibley, Christopher D; Schneekloth,John
  3. Angewandte Chemie (International ed. in English). 2025, Mar 31; e202503078.
  1. 11.   Circulating cell-free Nucleic Acid Detection for W. bancrofti infections
  2. Salazar, Marisa; Schaughency,Paul; Nutman, Thomas B; Bennuru, Sasisekhar
  3. The Journal of Infectious Diseases. 2025, Mar 17;
  1. 12.   The human oral microbiome and risk of colorectal cancer within three prospective cohort studies in the United States
  2. Vogtmann, Emily; Yano, Yukiko; Zouiouich, Semi; Hua,Xing; Wan, Yunhu; Purandare, Vaishnavi; Li, Shilan; Dagnall,Casey; Jones, Kristine; Hicks,Belynda; Hutchinson,Amy; Caporaso, J Gregory; Wheeler, William; Huang, Wen-Yi; Freedman, Neal D; Sandler, Dale P; Beane Freeman, Laura E; Liao, Linda M; Gail, Mitchell H; Shi, Jianxin; Abnet, Christian C; Sinha, Rashmi
  3. Cancer. 2025, Mar 15; 131(6): e35802.
  1. 13.   Data imbalance in drug response prediction: multi-objective optimization approach in deep learning setting
  2. Narykov, Oleksandr; Zhu, Yitan; Brettin, Thomas; Evrard,Yvonne; Partin, Alexander; Xia, Fangfang; Shukla, Maulik; Vasanthakumari, Priyanka; Doroshow, James H; Stevens, Rick L
  3. Briefings in Bioinformatics. 2025, Mar 04; 26(2):
  1. 14.   Noncanonical circRNA biogenesis driven by alpha and gamma herpesviruses
  2. Dremel, Sarah E; Koparde,Vishal; Arbuckle, Jesse H; Hogan, Chad H; Kristie, Thomas M; Krug, Laurie T; Conrad, Nicholas K; Ziegelbauer, Joseph M
  3. The EMBO Journal. 2025, Mar 03;
  1. 15.   Prior SARS-Cov-2 infection affects adaptive immune responses to Omicron BA.4/BA.5 mRNA booster
  2. Wachter, Brianna T; Xu, Qin; Shi, Lihong; Burbelo, Peter D; Myint-Hpu, Kathy; Schwartzberg, Pamela L; Rehman,Tauseef; Dewar,Robin; Boswell, Kristin L; Koup, Richard A; Oguz, Cihan; Imberti, Luisa; Bellusci, Lorenza; Pourhashemi, Sara; Khurana, Surender; Manthiram, Kalpana; Notarangelo, Luigi D; Delmonte, Ottavia M
  3. The journal of Allergy and Clinical Immunology. . 2025, Mar 03;
  1. 16.   The integrated stress response regulates 18S nonfunctional rRNA decay in mammals
  2. Coria,Aaztli; Shah,Akruti; Shafieinouri,Mohammad; Taylor, Sarah J; Orgebin,Emilien; Guiblet,Wilfried; Miller,Jennifer; Sharma, Indra Mani; Wu, Colin Chih-Chien
  3. Molecular Cell. 2025, Feb 07;
  1. 17.   Proteomic and serologic assessments of responses to mRNA-1273 and BNT162b2 vaccines in human recipient sera
  2. Hickey,Thomas; Mudunuri,Uma; Hempel,Heidi; Kemp,Troy; Roche,Nancy; Talsania, Keyur; Sellers, Brian A; Cherry, James M; Pinto,Ligia
  3. Frontiers in Immunology. 2025, Jan 27; 15: 1502458.
  1. 18.   Comparative Genomic Hybridization (CGH) in New World Monkeys (Primates) Reveals the Distribution of Repetitive Sequences in Cebinae and Callitrichinae
  2. Milioto, Vanessa; Arizza, Vincenzo; Vizzini, Aiti; Perelman, Polina L; Roelke-Parker,Melody; Dumas, Francesca
  3. Biology. 2024, Dec 29; 14(1):
  1. 19.   HIV-1 transcription start sites usage and its impact on unspliced RNA functions in people living with HIV
  2. Islam,Mohammad Saiful; Maldarelli,Frank; Nikolaitchik,Olga; Cheng,Zetao; Gorelick,Robert; Nikolaitchik, Maria A; Pathak,Vinay; Hu,Wei-Shau
  3. mBio. 2024, Dec 27; e0357624.
  1. 20.   Inferring phase transitions and critical exponents from limited observations with thermodynamic maps
  2. Herron, Lukas; Mondal, Kinjal; Schneekloth,Jay; Tiwary, Pratyush
  3. Proceedings of the National Academy of Sciences of the United States of America. 2024, Dec 24; 121(52): e2321971121.
  1. 21.   The differential interactomes of the KRAS splice variants identify BIRC6 as a ubiquitin ligase for KRAS4A
  2. Kochen Rossi, Juan; Nuevo-Tapioles, Cristina; O'Keefe, Rachel A; Hunkeler, Moritz; Schmoker, Anna M; Fissore-O'Leary, Mercedes; Su, Wenjuan; Ahearn, Ian M; Branco, Cristina; Cheong, Hakyung; Esposito,Dom; Clotea, Ioana; Ueberheide, Beatrix; Fischer, Eric S; Philips, Mark R
  3. Cell Reports. 2024, Dec 19; 44(1): 115087.
  1. 22.   Corneal and conjunctival abnormalities in a cohort of survivors from the Western African Ebola virus disease outbreak
  2. Fashina, Tolulope; Nguyen, Nam V; Huang, Ye; Randleman, Casey; Hartley, Caleb D; Mattia, John G; Vandy, Matthew J; Harrison-Williams, Lloyd C; Mustapha, Jalikatu; Mwanza, Jean-Claude; Hayek, Brent R; Crozier,Ian; Shantha, Jessica G; Yeh, Steven
  3. AJO International. 2024, Dec 11; 1(4):
  1. 23.   A KSHV RNA-binding protein promotes FOS to inhibit nuclease AEN and transactivate RGS2 for AKT phosphorylation
  2. Majerciak,Vladimir; Alvarado-Hernandez, Beatriz; Ma, Yanping; Duduskar, Shivalee; Lobanov, Alexei; Cam, Maggie; Zheng,Zhi-Ming
  3. mBio. 2024, Dec 10; e0317224.
  1. 24.   Co-incubation of Short Amphiphilic Peptides with Dicer Substrate RNAs Results in ß-Sheet Fibrils for Enhanced Gene Silencing in Cancer Cells
  2. Gupta, Kshitij; Parlea, Lorena; Puri,Anu; Smith, Katelyn; Puri,Anu; Bergman, Joseph T; Kim, Taejin; Shapiro,Bruce
  3. RNA Nanomed. 2024, Dec; 1(1): 61-78.
  1. 25.   Single-cell transcriptional analysis of murine norovirus infection in a human intestinal cell line
  2. Matsushima, Yuki; Levenson, Eric A; Chaimongkol, Natthawan; Harris, Loyall; Zhao,Yongmei; Turan,Sevilay; Otaizo-Carrasquero, Francisco; Ganesan, Sundar; Hornick, Katherine M; Martens, Craig; Sosnovtsev, Stanislav V; Green, Kim Y
  3. Journal of Virology. 2024, Oct 30; e0161724.
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