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  1. 1.   Multistrand RNA Secondary Structure Prediction and Nanostructure Design Including Pseudoknots
  2. Bindewald, E.; Afonin, K.; Jaeger, L.; Shapiro, B. A.
  3. Acs Nano. 2011, Dec; 5(12): 9542-9551.
  1. 2.   Computer Simulations of Peptides from the p53 DNA Binding Domain
  2. Khalili, M.; Wales, D. J.
  3. Journal of Chemical Theory and Computation. 2009 5(5): 1380-1392.
  1. 3.   Bridging the gap in RNA structure prediction
  2. Shapiro, B. A.; Yingling, Y. G.; Kasprzak, W.; Bindewald, E.
  3. Current Opinion in Structural Biology. 2007, Apr; 17(2): 157-165.
  1. 4.   RNA secondary structure prediction from sequence alignments using a network of k-nearest neighbor classifiers
  2. Bindewald, E.; Shapiro, B. A.
  3. Rna-a Publication of the Rna Society. 2006 12(3): 342-352.
  1. 5.   The palm subdomain-based active site is internally permuted in viral RNA-dependent RNA polymerases of an ancient lineage
  2. Gorbalenya, A. E.; Pringle, F. M.; Zeddam, J. L.; Luke, B. T.; Cameron, C. E.; Kalmakoff, J.; Hanzlik, T. N.; Gordon, K. H. J.; Ward, V. K.
  3. Journal of Molecular Biology. 2002 324(1): 47-62.
  1. 6.   Distinguishing between sequential and nonsequentially folded proteins: Implications for folding and misfolding
  2. Tsai, C. J.; Maizel, J. V.; Nussinov, R.
  3. Protein Science. 1999 8(8): 1591-1604.
  1. 7.   Prediction of Protein Supersecondary Structures Based On the Artificial Neural Network Method
  2. Sun, Z. R.; Rao, X. Q.; Peng, L. W.; Xu, D.
  3. Protein Engineering. 1997 10(7): 763-769.
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