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  1. 1.   Role of Backbone Chemistry and Monomer Sequence in Amphiphilic Oligopeptide- and Oligopeptoid-Functionalized PDMS- and PEO-Based Block Copolymers for Marine Antifouling and Fouling Release Coatings
  2. Patterson, Anastasia L.; Wenning, Brandon; Rizis, Georgios; Calabrese, Dave; Finlay, John A.; Franco, Sofia C.; Zuckermann, Ronald N.; Clare, Anthony S.; Kramer, Edward J.; Ober, Christopher K.; Segalman, Rachel A.
  3. MACROMOLECULES. 2017, Apr 11; 50(7): 2656-2667.
  1. 2.   SymmRef: A flexible refinement method for symmetric multimers
  2. Mashiach-Farkash, E.; Nussinov, R.; Wolfson, H. J.
  3. Proteins-Structure Function and Bioinformatics. 2011, Sep; 79(9): 2607-2623.
  1. 3.   Exploring the energy landscape of a molecular engineered analog of a tumor-homing peptide
  2. Revilla-Lopez, G.; Torras, J.; Nussinov, R.; Aleman, C.; Zanuy, D.
  3. Physical Chemistry Chemical Physics. 2011, Jun 7; 13(21): 9986-9994.
  1. 4.   Myristate Exposure in the Human Immunodeficiency Virus Type 1 Matrix Protein Is Modulated by pH
  2. Fledderman, E. L.; Fujii, K.; Ghanam, R. H.; Waki, K.; Prevelige, P. E.; Freed, E. O.; Saad, J. S.
  3. Biochemistry. 2010, Nov; 49(44): 9551-9562.
  1. 5.   Conformational Profile of a Proline-Arginine Hybrid
  2. Revilla-Lopez, G.; Jimenez, A. I.; Cativiela, C.; Nussinov, R.; Aleman, C.; Zanuy, D.
  3. Journal of Chemical Information and Modeling. 2010, Oct; 50(10): 1781-1789.
  1. 6.   Polymorphism in Alzheimer A beta Amyloid Organization Reflects Conformational Selection in a Rugged Energy Landscape
  2. Miller, Y.; Ma, B.; Nussinov, R.
  3. Chemical Reviews. 2010, Aug; 110(8): 4820-4838.
  1. 7.   NCAD, a Database Integrating the Intrinsic Conformational Preferences of Non-Coded Amino Acids
  2. Revilla-Lopez, G.; Torras, J.; Curco, D.; Casanovas, J.; Calaza, M. I.; Zanuy, D.; Jimenez, A. I.; Cativiela, C.; Nussinov, R.; Grodzinski, P.; Aleman, C.
  3. Journal of Physical Chemistry B. 2010, Jun; 114(21): 7413-7422.
  1. 8.   How Does the Reductase Help To Regulate the Catalytic Cycle of Cytochrome P450 3A4 Using the Conserved Water Channel?
  2. Fishelovitch, D.; Shaik, S.; Wolfson, H. J.; Nussinov, R.
  3. Journal of Physical Chemistry B. 2010, May; 114(17): 5964-5970.
  1. 9.   Conformational Preferences of 1-Amino-2-phenylcyclohexanecarboxylic Acid, a Phenylalanine Cyclohexane Analogue
  2. Aleman, C.; Jimenez, A. I.; Cativiela, C.; Nussinov, R.; Casanovas, J.
  3. Journal of Organic Chemistry. 2009 74(20): 7834-7843.
  1. 10.   Protein Segments with Conformationally Restricted Amino Acids Can Control Supramolecular Organization at the Nanoscale
  2. Zanuy, D.; Ballano, G.; Jimenez, A. I.; Casanovas, J.; Haspel, N.; Cativiela, C.; Curco, D.; Nussinov, R.; Aleman, C.
  3. Journal of Chemical Information and Modeling. 2009 49(7): 1623-1629.
  1. 11.   Structural Analysis of a beta-Helical Protein Motif Stabilized by Targeted Replacements with Conformationally Constrained Amino Acids
  2. Ballano, G.; Zanuy, D.; Jimenez, A. I.; Cativiela, C.; Nussinov, R.; Aleman, C.
  3. Journal of Physical Chemistry B. 2008 112(41): 13101-13115.
  1. 12.   1-amino-2-phenylcyclopentane-1-carboxylic acid: A conformationally restricted phenylalanine analogue
  2. Casanovas, J.; Jimenez, A. I.; Cativiela, C.; Nussinov, R.; Aleman, C.
  3. Journal of Organic Chemistry. 2008 73(2): 644-651.
  1. 13.   Intrinsic conformational preferences of C-alpha,C-alpha-dibenzylglycine
  2. Casanovas, J.; Nussinov, R.; Aleman, C.
  3. Journal of Organic Chemistry. 2008 73(11): 4205-4211.
  1. 14.   Conformational Preferences of beta- and gamma-Aminated Proline Analogues
  2. Flores-Ortega, A.; Casanovas, J.; Nussinov, R.; Aleman, C.
  3. Journal of Physical Chemistry B. 2008 112(44): 14045-14055.
  1. 15.   FireDock: a web server for fast interaction refinement in molecular docking
  2. Mashiach, E.; Schneidman-Duhovny, D.; Andrusier, N.; Nussinov, R.; Wolfson, H. J.
  3. Nucleic Acids Research. 2008 36: W229-W232.
  1. 16.   Novel 4-aminoquinolines active against chloroquine-resistant and sensitive P. falciparum strains that also inhibit botulinum serotype A
  2. Solaja, B. A.; Opsenica, D.; Smith, K. S.; Milhous, W. K.; Terzic, N.; Opsenica, I.; Burnett, J. C.; Nuss, J.; Gussio, R.; Bavari, S.
  3. Journal of Medicinal Chemistry. 2008 51(15): 4388-4391.
  1. 17.   FireDock: Fast interaction refinement in molecular docking
  2. Andrusier, N.; Nussinov, R.; Wolfson, H. J.
  3. Proteins-Structure Function and Bioinformatics. 2007, Oct; 69(1): 139-159.
  1. 18.   Principles of nanostructure design with protein building blocks
  2. Tsai, C. J.; Zheng, J.; Zanuy, D.; Haspel, N.; Wolfson, H.; Aleman, C.; Nussinov, R.
  3. Proteins-Structure Function and Bioinformatics. 2007, Jul; 68(1): 1-12.
  1. 19.   Conformationally constrained analogues of diacylglycerol (DAG). 28. DAG-dioxolanones reveal a new additional interaction site in the C1b domain of PKC delta
  2. Choi, Y.; Pu, Y.; Peach, M. L.; Kang, J. H.; Lewin, N. E.; Sigano, D. M.; Garfield, S. H.; Blumberg, P. M.; Marquez, V. E.
  3. Journal of Medicinal Chemistry. 2007, Jul; 50(15): 3465-3481.
  1. 20.   Conformations of proline analogues having double bonds in the ring
  2. Flores-Ortega, A.; Casanovas, J.; Zanuy, D.; Nussinov, R.; Aleman, C.
  3. Journal of Physical Chemistry B. 2007, May; 111(19): 5475-5482.
  1. 21.   How different are structurally flexible and rigid binding sites? Sequence and structural features discriminating proteins that do and do not undergo conformational change upon ligand binding
  2. Gunasekaran, K.; Nussinov, R.
  3. Journal of Molecular Biology. 2007, Jan; 365(1): 257-273.
  1. 22.   Antineoplastic agents. 445. Synthesis and evaluation of structural modifications of (Z)- and (E)-combretastatin A-4
  2. Pettit, G. R.; Rhodes, M. R.; Herald, D. L.; Hamel, E.; Schmidt, J. M.; Pettitt, R. K.
  3. Journal of Medicinal Chemistry. 2005, JUN 16; 48(12): 4087-4099.
  1. 23.   Isolation and characterization of novel cyclotides from Viola hederaceae - Solution structure and anti-HIV activity of vhl-1, a leaf-specific expressed cyclotide
  2. Chen, B.; Colgrave, M. L.; Daly, N. L.; Rosengren, K. J.; Gustafson, K. R.; Craik, D. J.
  3. Journal of Biological Chemistry. 2005, JUN 10; 280(23): 22395-22405.
  1. 24.   Energy landscape of amyloidogenic peptide oligomerization by parallel-tempering molecular dynamics simulation: Significant role of Asn ladder
  2. Tsai, H. H.; Reches, M.; Tsai, C. J.; Gunasekaran, K.; Gazit, E.; Nussinov, R.
  3. Proceedings of the National Academy of Sciences of the United States of America. 2005, JUN 7; 102(23): 8174-8179.
  1. 25.   Crystal structure of cockroach allergen Bla g 2, an unusual zinc binding aspartic protease with a novel mode of self-inhibition
  2. Gustchina, A.; Li, M.; Wunschmann, S.; Chapman, M. D.; Pomes, A.; Wlodawer, A.
  3. Journal of Molecular Biology. 2005, APR 29; 348(2): 433-444.
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