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  1. 1.   Amyloid Oligomers: A Joint Experimental/Computational Perspective on Alzheimer's Disease, Parkinson's Disease, Type II Diabetes, and Amyotrophic Lateral Sclerosis
  2. Nguyen, Phuong H.; Ramamoorthy, Ayyalusamy; Sahoo, Bikash R.; Zheng, Jie; Faller, Peter; Straub, John E.; Dominguez, Laura; Shea, Joan-Emma; Dokholyan, Nikolay; De Simone, Alfonso; Ma, Buyong; Nussinov,Ruth; Najafi, Saeed; Ngo, Son Tung; Loquet, Antoine; Chiricotto, Mara; Ganguly, Pritam; McCarty, James; Li, Mai Suan; Hall, Carol; Wang, Yiming; Miller, Yifat; Melchionna, Simone; Habenstein, Birgit; Timr, Stepan; Chen, Jiaxing; Hnath, Brianna; Strodel, Birgit; Kayed, Rakez; Lesne, Sylvain; Wei, Guanghong; Sterpone, Fabio; Doig, Andrew J.; Derreumaux, Philippe
  3. Chemical Reviews. 2021, Feb 24; 121(4): 2545-2647.
  1. 2.   beta-Barrel Topology of Alzheimer's beta-Amyloid Ion Channels
  2. Jang, H.; Arce, F. T.; Ramachandran, S.; Capone, R.; Lal, R.; Nussinov, R.
  3. Journal of Molecular Biology. 2010, Dec; 404(5): 917-934.
  1. 3.   Polymorphic C-terminal beta-Sheet Interactions Determine the Formation of Fibril or Amyloid beta-derived Diffusible Ligand-like Globulomer for the Alzheimer A beta 42 Dodecamer
  2. Ma, B. Y.; Nussinov, R.
  3. Journal of Biological Chemistry. 2010, Nov; 285(47): 37102-37110.
  1. 4.   Polymorphism in Alzheimer A beta Amyloid Organization Reflects Conformational Selection in a Rugged Energy Landscape
  2. Miller, Y.; Ma, B.; Nussinov, R.
  3. Chemical Reviews. 2010, Aug; 110(8): 4820-4838.
  1. 5.   Antimicrobial Protegrin-1 Forms Ion Channels: Molecular Dynamic Simulation, Atomic Force Microscopy, and Electrical Conductance Studies
  2. Capone, R.; Mustata, M.; Jang, H.; Arce, F. T.; Nussinov, R.; Lal, R.
  3. Biophysical Journal. 2010, Jun; 98(11): 2644-2652.
  1. 6.   Resonance Assignment and Three-Dimensional Structure Determination of a Human alpha-Defensin, HNP-1, by Solid-State NMR
  2. Zhang, Y.; Doherty, T.; Li, J.; Lu, W. Y.; Barinka, C.; Lubkowski, J.; Hong, M.
  3. Journal of Molecular Biology. 2010, Mar; 397(2): 408-422.
  1. 7.   Atomic-Scale Simulations Confirm that Soluble beta-Sheet-Rich Peptide Self-Assemblies Provide Amyloid Mimics Presenting Similar Conformational Properties
  2. Yu, X.; Wang, J. D.; Yang, J. C.; Wang, Q. M.; Cheng, S. Z. D.; Nussinov, R.; Zheng, J.
  3. Biophysical Journal. 2010, Jan; 98(1): 27-36.
  1. 8.   Polymorphism of Alzheimer's A beta(17-42) (p3) Oligomers: The Importance of the Turn Location and Its Conformation
  2. Miller, Y.; Ma, B. Y.; Nussinov, R.
  3. Biophysical Journal. 2009 97(4): 1168-1177.
  1. 9.   K3 Fragment of Amyloidogenic beta(2)-Microglobulin Forms Ion Channels: Implication for Dialysis Related Amyloidosis
  2. Mustata, M.; Capone, R.; Jang, H.; Arce, F. T.; Ramachandran, S.; Lal, R.; Nussinov, R.
  3. Journal of the American Chemical Society. 2009 131(41): 14938-14945.
  1. 10.   Structural Analysis of a beta-Helical Protein Motif Stabilized by Targeted Replacements with Conformationally Constrained Amino Acids
  2. Ballano, G.; Zanuy, D.; Jimenez, A. I.; Cativiela, C.; Nussinov, R.; Aleman, C.
  3. Journal of Physical Chemistry B. 2008 112(41): 13101-13115.
  1. 11.   New structures help the modeling of toxic amyloid beta ion channels
  2. Jang, H. B.; Zheng, J.; Lal, R.; Nussinov, R.
  3. Trends in Biochemical Sciences. 2008 33(2): 91-100.
  1. 12.   Models of Toxic beta-Sheet Channels of Protegrin-1 Suggest a Common Subunit Organization Motif Shared with Toxic Alzheimer beta-Amyloid Ion Channels
  2. Jang, H.; Ma, B.; Lal, R.; Nussinov, R.
  3. Biophysical Journal. 2008 95(10): 4631-4642.
  1. 13.   Annular structures as intermediates in fibril formation of Alzheimer A beta(17-42)
  2. Zheng, J.; Jang, H.; Ma, B.; Nussinov, R.
  3. Journal of Physical Chemistry B. 2008 112(22): 6856-6865.
  1. 14.   Modeling the Alzheimer A beta(17-42) fibril architecture: Tight intermolecular sheet-sheet association and intramolecular hydrated cavities
  2. Zheng, J.; Jang, H.; Ma, B.; Tsai, C. J.; Nussinov, R.
  3. Biophysical Journal. 2007, Nov; 93(9): 3046-3057.
  1. 15.   Models of beta-amyloid ion channels in the membrane suggest that channel formation in the bilayer is a dynamic process
  2. Jang, H.; Zheng, J.; Nussinov, R.
  3. Biophysical Journal. 2007, Sep; 93(6): 1938-1949.
  1. 16.   Principles of nanostructure design with protein building blocks
  2. Tsai, C. J.; Zheng, J.; Zanuy, D.; Haspel, N.; Wolfson, H.; Aleman, C.; Nussinov, R.
  3. Proteins-Structure Function and Bioinformatics. 2007, Jul; 68(1): 1-12.
  1. 17.   Conformational study of the protegrin-I (PG-I) dimer interaction with lipid bilayers and its effect
  2. Jang, H.; Ma, B. Y.; Nussinov, R.
  3. Bmc Structural Biology. 2007, Apr; 7
  1. 18.   Interaction of protegrin-1 with lipid bilayers: Membrane thinning effect
  2. Jang, H.; Ma, B.; Woolf, T. B.; Nussinov, R.
  3. Biophysical Journal. 2006, Oct; 91(8): 2848-2859.
  1. 19.   Sequence and structure analysis of parallel beta helices: Implication for constructing amyloid structural models
  2. Tsai, H. H.; Gunasekaran, K.; Nussinov, R.
  3. Structure. 2006, Jun; 14(6): 1059-1072.
  1. 20.   From peptide-based material science to protein fibrils: discipline convergence in nanobiology
  2. Zanuy, D.; Nussinov, R.; Aleman, C.
  3. Physical Biology. 2006, Mar; 3(1): S80-S90.
  1. 21.   Energy landscape of amyloidogenic peptide oligomerization by parallel-tempering molecular dynamics simulation: Significant role of Asn ladder
  2. Tsai, H. H.; Reches, M.; Tsai, C. J.; Gunasekaran, K.; Gazit, E.; Nussinov, R.
  3. Proceedings of the National Academy of Sciences of the United States of America. 2005, JUN 7; 102(23): 8174-8179.
  1. 22.   H-1-N-15 correlation spectroscopy of nanocrystalline proteins
  2. Morcombe, C. R.; Paulson, E. K.; Gaponenko, V.; Byrd, R. A.; Zilm, K. W.
  3. Journal of Biomolecular Nmr. 2005, MAR; 31(3): 217-230.
  1. 23.   Structure and dynamics of the surfactant molecules in dodecyltrimethylammonium center dot poly(alpha,L-glutamate) self-assembled complexes
  2. Zanuy, D.; Casanovas, J.; Aleman, C.
  3. Chemical Physics. 2004, OCT 25; 305(1-3): 85-93.
  1. 24.   Experimental and structural evidence that herpes 1 kinase and cellular DNA polymerase(s) discriminate on the basis of sugar pucker
  2. Marquez, V. E.; Ben Kasus, T.; Barchi, J. J.; Green, K. M.; Nicklaus, M. C.; Agbaria, R.
  3. Journal of the American Chemical Society. 2004 126(2): 543-549.
  1. 25.   Thermal stability of the secondary structure of poly(alpha,L-glutamate) in self-assembled complexes as studied by molecular dynamics in chloroform solution
  2. Zanuy, D.; Casanovas, J.; Aleman, C.
  3. Journal of the American Chemical Society. 2004 126(3): 704-705.
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