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  1. 1.   Repeated horizontal acquisition of lagriamide-producing symbionts in Lagriinae beetles
  2. Uppal, Siddharth; Simonson,Sam Waterworth; Nick, Alina; Vogel, Heiko; Flórez, Laura V; Kaltenpoth, Martin; Kwan, Jason C
  3. The ISME Journal. 2024, Oct 23;
  1. 2.   Phase 1 trial to model primary, secondary, and tertiary dengue using a monovalent vaccine
  2. Odio, Camila D; Lowman, Kelsey E; Law, Melissa; Aogo, Rosemary A; Hunsberger, Sally; Wood, Brad J; Kassin, Michael; Levy, Elliot; Callier,Viviane; Firdous, Saba; Hasund, Chloe M; Voirin, Charlie; Kattappuram, Robbie; Yek, Christina; Manning, Jessica; Durbin, Anna; Whitehead, Stephen S; Katzelnick, Leah C
  3. BMC infectious diseases. 2023, May 23; 23(1): 345.
  1. 3.   Safety levels of systemic IL-12 induced by cDNA expression as a cancer therapeutic
  2. Savid-Frontera, Constanza; Viano, Maria E; Baez, Natalia S; Reynolds, Della; Matellon, Mariana; Young,Howard; Rodriguez-Galan, Maria C
  3. Immunotherapy. 2021, Nov 16;
  1. 4.   Predicting RNA SHAPE scores with deep learning
  2. Bliss, Noah; Bindewald,Eckart; Shapiro,Bruce
  3. RNA biology. 2020, JUN 1; 1-7.
  1. 5.   Modeling ligand docking to RNA in the design of RNA-based nanostructures
  2. Kasprzak,Wojciech; Ahmed, Nour Ali; Shapiro,Bruce
  3. Current opinion in biotechnology. 2020, JUN; 63: 16-25.
  1. 6.   Structure of E3 ligase E6AP with a proteasome-binding site provided by substrate receptor hRpn10
  2. Buel,Gwen; Chen,Xiang; Chari,Raj; O'Neill, Maura J; Ebelle, Danielle L; Jenkins, Conor; Sridharan, Vinidhra; Tarasov,Sergey; Tarasova,Nadya; Andresson,Thorkell; Walters,Kylie
  3. Nature communications. 2020, Mar 10; 11(1): 1291.
  1. 7.   Conformational Switch to a beta-Turn in a Staphylococcal Quorum Sensing Signal Peptide Causes a Dramatic Increase in Potency
  2. Vasquez, Joseph K.; West, Korbin H. J.; Yang, Tian; Polaske, Thomas J.; Cornilescu,Gabriel; Tonelli, Marco; Blackwell, Helen E.
  3. JOURNAL OF THE AMERICAN CHEMICAL SOCIETY. 2020, JAN 15; 142(2): 750-761.
  1. 8.   Prevalence of pathogenic/likely pathogenic variants in the 24 cancer genes of the ACMG Secondary Findings v2.0 list in a large cancer cohort and ethnicity-matched controls
  2. Kim, Jung; Luo, Wen; Wang, Mingyi; Wegman-Ostrosky, Talia; Frone, Megan N.; Johnston, Jennifer J.; Nickerson, Michael L.; Rotunno, Melissa; Li, Shengchao; Achatz, Maria I.; Brodie, Seth; Dean, Michael; de Andrade, Kelvin C.; Fortes, Fernanda P.; Gianferante, Matthew; Khincha, Payal; McMaster, Mary L.; McReynolds, Lisa J.; Pemov, Alexander; Pinheiro, Maisa; Santiago, Karina M.; Alter, Blanche P.; Caporaso, Neil E.; Gadalla, Shahinaz M.; Goldin, Lynn R.; Greene, Mark H.; Loud, Jennifer; Yang, Xiaohong R.; Freedman, Neal D.; Gapstur, Susan M.; Gaudet, Mia M.; Calista, Donato; Ghiorzo, Paola; Fargnoli, Maria Concetta; Nagore, Eduardo; Peris, Ketty; Puig, Susana; Landi, Maria Teresa; Hicks, Belynda; Zhu, Bin; Liu, Jia; Sampson, Joshua N.; Chanock, Stephen J.; Mirabello, Lisa J.; Morton, Lindsay M.; Biesecker, Leslie G.; Tucker, Margaret A.; Savage, Sharon A.; Goldstein, Alisa M.; Stewart, Douglas R.
  3. Genome medicine. 2018, Dec 24; 10(1):
  1. 9.   GENE EXPRESSION IN MULTIPLE REGIONS OF THE RAT BRAIN DURING CHRONIC NEUROPATHIC PAIN DEVELOPMENT: MRNA SEQUENCING ANALYSIS
  2. Clifford, John L.; Kumar, Raina; Srinivasan, Seshamalini; Dimitrov, George; Gautam, Aarti; Yang, Ruoting; Williams, Joshua; Workman, Emily; Chavez, Roger; Sosanya, Natasha; Cheppudira, Bopaiah; Christy, Robert; Hammamieh, Rasha
  3. JOURNAL OF NEUROTRAUMA. 2018, AUG; 35: A31-A31.
  1. 10.   Review of bioactive secondary metabolites from marine bryozoans in the progress of new drugs discovery
  2. Tian, Xiang Rong; Tang, Hai Feng; Tian, Xiao Lin; Hu, Jia Jun; Huang, Li Li; Gustafson, Kirk
  3. Future medicinal chemistry. 2018, Jun; 10(12): 1497-1514.
  1. 11.   Probing the Structures of Viral RNA Regulatory Elements with SHAPE and Related Methodologies
  2. Rausch, Jason; Sztuba-Solinska, Joanna; Legrice, Stuart
  3. Frontiers in Microbiology. 2018, Jan 9; 8: 2634.
  1. 12.   Topological structure determination of RNA using small angle X-ray scattering
  2. Bhandari, Yuba; Fan, Lixin; Fang, Xianyang; Zaki, George; Stahlberg, Eric; Jiang, Wei; Schwieters, Charles D; Stagno, Jason; Wang, Yun-Xing
  3. Journal of molecular biology. 2017, Nov 24; 429(23): 3635-3649.
  1. 13.   Structure of the cytoplasmic domain of Yersinia pestis YscD, an essential component of the type III secretion system
  2. Lountos, G. T.; Tropea, J. E.; Waugh, D. S.
  3. Acta Crystallographica Section D-Biological Crystallography. 2012, Mar; 68: 201-209.
  1. 14.   Probing Structural Features of Alzheimer's Amyloid-beta Pores in Bilayers Using Site-Specific Amino Acid Substitutions
  2. Capone, R.; Jang, H.; Kotler, S. A.; Kagan, B. L.; Nussinov, R.; Lal, R.
  3. Biochemistry. 2012, Jan; 51(3): 776-785.
  1. 15.   Multistrand RNA Secondary Structure Prediction and Nanostructure Design Including Pseudoknots
  2. Bindewald, E.; Afonin, K.; Jaeger, L.; Shapiro, B. A.
  3. Acs Nano. 2011, Dec; 5(12): 9542-9551.
  1. 16.   Femtomole SHAPE Reveals Regulatory Structures in the Authentic XMRV RNA Genome
  2. Grohman, J. K.; Kottegoda, S.; Gorelick, R. J.; Allbritton, N. L.; Weeks, K. M.
  3. Journal of the American Chemical Society. 2011, Dec; 133(50): 20326-20334.
  1. 17.   Polymorphic Triple beta-Sheet Structures Contribute to Amide Hydrogen/Deuterium (H/D) Exchange Protection in the Alzheimer Amyloid beta 42 Peptide
  2. Ma, B. Y.; Nussinov, R.
  3. Journal of Biological Chemistry. 2011, Sep; 286(39): 34244-34253.
  1. 18.   Correlating SHAPE signatures with three-dimensional RNA structures
  2. Bindewald, E.; Wendeler, M.; Legiewicz, M.; Bona, M. K.; Wang, Y.; Pritt, M. J.; Le Grice, S. F. J.; Shapiro, B. A.
  3. Rna-a Publication of the Rna Society. 2011, Sep; 17(9): 1688-1696.
  1. 19.   RNA Folding in Transcription Elongation Complex IMPLICATION FOR TRANSCRIPTION TERMINATION
  2. Lubkowska, L.; Maharjan, A. S.; Komissarova, N.
  3. Journal of Biological Chemistry. 2011, Sep; 286(36): 31576-31585.
  1. 20.   SHAPE analysis of the FIV Leader RNA reveals a structural switch potentially controlling viral packaging and genome dimerization
  2. Kenyon, J. C.; Tanner, S. J.; Legiewicz, M.; Phillip, P. S.; Rizvi, T. A.; Le Grice, S. F. J.; Lever, A. M. L.
  3. Nucleic Acids Research. 2011, Aug; 39(15): 6692-6704.
  1. 21.   Protein structure prediction using a docking-based hierarchical folding scheme
  2. Kifer, I.; Nussinov, R.; Wolfson, H. J.
  3. Proteins-Structure Function and Bioinformatics. 2011, Jun; 79(6): 1759-1773.
  1. 22.   Identification of Cis-Acting Elements in the 3 '-Untranslated Region of the Dengue Virus Type 2 RNA That Modulate Translation and Replication
  2. Manzano, M.; Reichert, E. D.; Polo, S.; Falgout, B.; Kasprzak, W.; Shapiro, B. A.; Padmanabhan, R.
  3. Journal of Biological Chemistry. 2011, Jun; 286(25): 22521-22534.
  1. 23.   On the Role of the SP1 Domain in HIV-1 Particle Assembly: a Molecular Switch?
  2. Datta, S. A. K. D. S. A. K.; Temeselew, L. G.; Crist, R. M.; Soheilian, F.; Kamata, A.; Mirro, J.; Harvin, D.; Nagashima, K.; Cachau, R. E.; Rein, A.
  3. Journal of Virology. 2011, May; 85(9): 4111-4121.
  1. 24.   Molecular-Level Examination of Cu2+ Binding Structure for Amyloid Fibrils of 40-Residue Alzheimer's beta by Solid-State NMR Spectroscopy
  2. Parthasarathy, S.; Long, F.; Miller, Y.; Xiao, Y. L.; McElheny, D.; Thurber, K.; Ma, B. Y.; Nussinov, R.; Ishii, Y.
  3. Journal of the American Chemical Society. 2011, Mar; 133(10): 3390-3400.
  1. 25.   Initiation complex dynamics direct the transitions between distinct phases of early HIV reverse transcription
  2. Liu, S. X.; Harada, B. T.; Miller, J. T.; Le Grice, S. F. J.; Zhuang, X. W.
  3. Nature Structural & Molecular Biology. 2010, Dec; 17(12): 1453-U83.
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