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  1. 1.   A KSHV RNA-binding protein promotes FOS to inhibit nuclease AEN and transactivate RGS2 for AKT phosphorylation
  2. Majerciak,Vladimir; Alvarado-Hernandez, Beatriz; Ma, Yanping; Duduskar, Shivalee; Lobanov, Alexei; Cam, Maggie; Zheng,Zhi-Ming
  3. mBio. 2024, Dec 10; e0317224.
  1. 2.   Structural insights into the cooperative nucleosome recognition and chromatin opening by FOXA1 and GATA4
  2. Zhou, Bing-Rui; Feng, Hanqiao; Huang, Furong; Zhu, Iris; Portillo-Ledesma, Stephanie; Shi,Dan; Zaret, Kenneth S; Schlick, Tamar; Landsman, David; Wang, Qianben; Bai, Yawen
  3. Molecular Cell. 2024, Jul 31;
  1. 3.   The Janus kinase 1 is critical for pancreatic cancer initiation and progression
  2. Shrestha, Hridaya; Rädler, Patrick D; Dennaoui, Rayane; Wicker, Madison N; Rajbhandari, Nirakar; Sun, Yunguang; Peck, Amy R; Vistisen, Kerry; Triplett, Aleata A; Beydoun, Rafic; Sterneck,Esta; Saur, Dieter; Rui, Hallgeir; Wagner, Kay-Uwe
  3. Cell Reports. 2024, May 10; 43(5): 114202.
  1. 4.   Multifaceted roles for STAT3 in gammaherpesvirus latency revealed through in vivo B cell knockout models
  2. Hogan, Chad H; Owens, Shana M; Reynoso, Glennys V; Liao, Yifei; Meyer,Thomas; Zelazowska, Monika A; Liu, Bin; Li, Xiaofan; Grosskopf, Anna K; Khairallah, Camille; Kirillov, Varvara; Reich, Nancy C; Sheridan, Brian S; McBride, Kevin M; Gewurz, Benjamin E; Hickman, Heather D; Forrest, J Craig; Krug, Laurie T
  3. mBio. 2024, Jan 03; e0299823.
  1. 5.   Genome-wide profiling of transcription factor activity in primary liver cancer using single-cell ATAC sequencing
  2. Craig, Amanda J; Silveira, Maruhen A Datsch; Ma, Lichun; Revsine, Mahler; Wang, Limin; Heinrich, Sophia; Rae, Zachary; Ruchinskas, Allison; Dadkhah,Kimia; Do, Whitney; Behrens, Shay; Mehrabadi, Farid R; Dominguez, Dana A; Forgues, Marshonna; Budhu, Anuradha; Chaisaingmongkol, Jittiporn; Hernandez, Jonathan M; Davis, Jeremy L; Tran,Bao; Marquardt, Jens U; Ruchirawat, Mathuros; Kelly, Michael; Greten, Tim F; Wang, Xin W
  3. Cell Reports. 2023, Nov 17; 42(11): 113446.
  1. 6.   Abundant binary promoter switches in lineage-determining transcription factors indicate a digital component of cell fate determination
  2. Li,Hongchuan; Rahman, Md Ahasanur; Ruesch, Michael; Eisele, Caprice D; Anderson,Erik; Wright,Paul; Cao, Jennie; Ratnayake, Shashikala; Chen, Qingrong; Yan, Chunhua; Meerzaman, Daoud; Abraham, Roshini S; Freud, Aharon G; Anderson,Steve
  3. Cell Reports. 2023, Nov 16; 42(11): 113454.
  1. 7.   Heat shock factor 1 (HSF1) specifically potentiates c-MYC-mediated transcription independently of the canonical heat shock response
  2. Xu, Meng; Lin,Ling; Ram,Babul; Shriwas,Omprakash; Chuang, Kun-Han; Dai, Siyuan; Su, Kuo-Hui; Tang, Zijian; Dai,Chengkai
  3. Cell Reports. 2023, May 23; 42(6): 112557.
  1. 8.   Massively parallel reporter assays and variant scoring identified functional variants and target genes for melanoma loci and highlighted cell-type specificity
  2. Long, Erping; Yin, Jinhu; Funderburk, Karen M; Xu, Mai; Feng, James; Kane, Alexander; Zhang, Tongwu; Myers, Timothy; Golden, Alyxandra; Thakur, Rohit; Kong, Hyunkyung; Jessop, Lea; Kim, Eun Young; Jones, Kristine; Chari,Raj; Machiela, Mitchell J; Yu, Kai; Iles, Mark M; Landi, Maria Teresa; Law, Matthew H; Chanock, Stephen J; Brown, Kevin M; Choi, Jiyeon
  3. American Journal of Human Genetics. 2022, Nov 18;
  1. 9.   Single-cell sequencing reveals activation of core transcription factors in PRC2-deficient malignant peripheral nerve sheath tumor
  2. Zhang, Xiyuan; Lou, Hannah E; Gopalan, Vishaka; Liu, Zhihui; Jafarah, Hilda M; Lei, Haiyan; Jones, Paige; Sayers, Carly M; Yohe, Marielle E; Chittiboina, Prashant; Widemann, Brigitte C; Thiele, Carol J; Kelly,Michael; Hannenhalli, Sridhar; Shern, Jack F
  3. Cell Reports. 2022, Sep 20; 40(12): 111363.
  1. 10.   The Myeloid-Specific Transcription Factor PU.1 Upregulates Mannose Receptor Expression but Represses Basal Activity of the HIV-LTR Promoter
  2. Kao, Sandra; Miyagi, Eri; Mallorson, Rosa; Saito, Hideki; Sukegawa, Sayaka; Mukherji, Abhik; Mateja,Allyson; Ferhadian, Damien; Fabryova, Helena; Clouse, Kathleen; Strebel, Klaus
  3. Journal of Virology. 2022, Jun 29; e0065222.
  1. 11.   RNF219 attenuates global mRNA decay through inhibition of CCR4-NOT complex-mediated deadenylation
  2. Poetz, Fabian; Corbo,Joshua; Levdansky,Yevgen; Spiegelhalter, Alexander; Lindner, Doris; Magg, Vera; Lebedeva, Svetlana; Schweiggert, Jorg; Schott, Johanna; Valkov,Eugene; Stoecklin, Georg
  3. Nature Communications. 2021, Dec 9; 12(1):
  1. 12.   Leucine zipper transcription factor-like 1 (LZTFL1), an intraflagellar transporter protein 27 (IFT27) associated protein, is required for normal sperm function and male fertility
  2. Huang, Qian; Li, Wei; Zhou, Qi; Awasthi,Roackie; Cazin, Caroline; Yap, Yitian; Mladenovic-Lucas, Ljiljana; Hu, Bo; Jeyasuria, Pancharatnam; Zhang, Ling; Granneman, James G.; Hess, Rex A.; Ray, Pierre F.; Kherraf, Zine-Eddine; Natarajan,Ven; Zhang, Zhibing
  3. Developmental biology. 2021, Sep; 477: 164-176.
  1. 13.   Pathogenic germline IKZF1 variant alters hematopoietic gene expression profiles
  2. Brodie,Seth; Khincha, Payal P.; Giri, Neelam; Bouk,Aaron; Steinberg,Mia; Dai,Jieqiong; Jessop, Lea; Donovan, Frank X.; Chandrasekharappa, Settara C.; de Andrade, Kelvin C.; Maric, Irina; Ellis, Steven R.; Mirabello, Lisa; Alter, Blanche P.; Savage, Sharon A.
  3. COLD SPRING HARBOR MOLECULAR CASE STUDIES. 2021, AUG; 7(4):
  1. 14.   beta-Arrestin-1 is required for adaptive beta-cell mass expansion during obesity
  2. Barella, Luiz F.; Rossi, Mario; Pydi, Sai P.; Meister, Jaroslawna; Jain, Shanu; Cui, Yinghong; Gavrilova, Oksana; Fulgenzi, Gianluca; Tessarollo,Lino; Wess, Jurgen
  3. Nature communications. 2021, Jun 7; 12(1):
  1. 15.   Clinical and Molecular Characterization of Microphthalmia-Associated Transcription Factor (MITF)-Related Renal Cell Carcinoma
  2. Lang, Martin; Vocke, Cathy D; Ricketts, Christopher J; Metwalli, Adam R; Ball, Mark W; Schmidt,Laura; Linehan, W Marston
  3. Urology. 2021, Mar; 149: 89-97.
  1. 16.   Mitochondrial DNA alterations underlie an irreversible shift to aerobic glycolysis in fumarate hydratase-deficient renal cancer
  2. Crooks, Daniel R.; Maio, Nunziata; Lang, Martin; Ricketts, Christopher J.; Vocke, Cathy D.; Gurram, Sandeep; Turan, Sevilay; Kim, Yun-Young; Cawthon, G. Mariah; Sohelian, Ferri; De Val, Natalia; Pfeiffer, Ruth M.; Jailwala, Parthav; Tandon, Mayank; Tran, Bao; Fan, Teresa W-M; Lane, Andrew N.; Ried, Thomas; Wangsa, Darawalee; Malayeri, Ashkan A.; Merino, Maria J.; Yang, Youfeng; Meier, Jordan L.; Ball, Mark W.; Rouault, Tracey A.; Srinivasan, Ramaprasad; Linehan, W. Marston
  3. Science Signaling. 2021, Jan 5; 14(664):
  1. 17.   Genetic and Epigenetic Regulation of the Smoothened Gene (SMO) in Cancer Cells
  2. Lou,Hong; Li,Hongchuan; Huehn, Andrew R; Tarasova,Nadya; Saleh, Bahara; Anderson, Stephen K; Dean,Michael
  3. Cancers. 2020, Aug 08; 12(8): pii: E2219.
  1. 18.   Creating and screening natural product libraries
  2. Wilson,Brice; Thornburg,Chris; Henrich,Curtis; Grkovic,Tanja; O'Keefe,Barry
  3. Natural product reports. 2020, JUL 1; 37: 893-918.
  1. 19.   Massively parallel reporter assays of melanoma risk variants identify MX2 as a gene promoting melanoma
  2. Choi, Jiyeon; Zhang, Tongwu; Vu, Andrew; Ablain, Julien; Makowski, Matthew M; Colli, Leandro M; Xu, Mai; Hennessey, Rebecca C; Yin, Jinhu; Rothschild, Harriet; Gräwe, Cathrin; Kovacs, Michael A; Funderburk, Karen M; Brossard, Myriam; Taylor, John; Pasaniuc, Bogdan; Chari,Raj; Chanock, Stephen J; Hoggart, Clive J; Demenais, Florence; Barrett, Jennifer H; Law, Matthew H; Iles, Mark M; Yu, Kai; Vermeulen, Michiel; Zon, Leonard I; Brown, Kevin M
  3. Nature communications. 2020, Jun 01; 11(1): 2718.
  1. 20.   Commensal microbiota drive the functional diversification of colon macrophages
  2. Kang, Byunghyun; Alvarado, Luigi J; Kim, Teayong; Lehmann, Michael L; Cho, Hyeseon; He, Jianping; Li, Peng; Kim, Bong-Hyun; Larochelle, Andre; Kelsall, Brian L
  3. Mucosal immunology. 2020, MAR; 13(2): 216-229.
  1. 21.   Differential Expression of the Transcription Factor GATA3 Specifies Lineage and Functions of Innate Lymphoid Cells
  2. Zhong, Chao; Zheng, Mingzhu; Cui, Kairong; Martins, Andrew J; Hu, Gangqing; Li, Dan; Tessarollo,Lino; Kozlov,Serguei; Keller,Jonathan; Tsang, John S; Zhao, Keji; Zhu, Jinfang
  3. Immunity. 2020, JAN 14; 52(1): 83-+.
  1. 22.   Assaying Homodimers of NF-?B in Live Single Cells
  2. Martin, Erik W; Chakraborty, Sayantan; Presman, Diego M; Tomassoni Ardori,Francesco; Oh, Kyu-Seon; Kaileh, Mary; Tessarollo,Lino; Sung, Myong-Hee
  3. Frontiers in immunology. 2019, Nov 7; 10: 2609.
  1. 23.   Spatial organization of RNA polymerase and its relationship with transcription in Escherichia coli
  2. Weng, Xiaoli; Bohrer, Christopher H; Bettridge, Kelsey; Lagda, Arvin Cesar; Cagliero, Cedric; Jin, Ding Jun; Xiao, Jie
  3. Proceedings of the National Academy of Sciences of the United States of America. 2019, OCT 1; 116(40): 20115-20123.
  1. 24.   TFE3 Xp11.2 translocation renal cell carcinoma mouse model reveals novel therapeutic targets and identifies GPNMB as a diagnostic marker for human disease
  2. Baba, Masaya; Furuya, Mitsuko; Motoshima, Takanobu; Lang, Martin; Funasaki, Shintaro; Ma, Wenjuan; Sun, Hong-Wei; Hasumi, Hisashi; Huang, Ying; Kato, Ikuma; Kadomatsu, Tsuyoshi; Satou, Yorifumi; Morris,Nicole; Ileva,Lilia; Kalen,Joseph; Wilan Krisna, Luh Ade; Hasumi, Yukiko; Sugiyama, Aiko; Kurahashi, Ryoma; Nishimoto, Koshiro; Oyama, Masafumi; Nagashima, Yoji; Kuroda, Naoto; Araki, Kimi; Eto, Masatoshi; Yao, Masahiro; Kamba, Tomomi; Suda, Toshio; Oike, Yuichi; Schmidt,Laura; Linehan, W Marston; Karim,Baktiar
  3. Molecular cancer research : MCR. 2019, AUG; 17(8): 1613-1626.
  1. 25.   Genome-Wide RNAi Screen Identifies PMPCB as a Therapeutic Vulnerability in EpCAM(+) Hepatocellular Carcinoma
  2. Takai, Atsushi; Dang, Hien; Oishi, Naoki; Khatib, Subreen; Martin, Sean P.; Dominguez, Dana A.; Luo, Ji; Beyer,Rachel; Wu,Xiaolin; Powell,Katie; Ye, Qing-Hai; Jia, Hu-Liang; Qin, Lun-Xiu; Chen, Jinqiu; Mitchell, Gary A.; Luo, Xiaoling; Thorgeirsson, Snorri S.; Wang, Xin Wei
  3. CANCER RESEARCH. 2019, May 1; 79(9): 2379-2391.
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