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  1. 1.   IFN-?/IL-2 Double-Color FluoroSpot Assay for Monitoring Human Primary T Cell Activation: Validation, Inter-Laboratory Comparison, and Recommendations for Clinical Studies
  2. Mauthe, Alexandra; Cedrone,Edward; Villar-Hernández, Raquel; Rusch, Elisa; Springer, Marco; Schuster, Martin; Preyer, Rosemarie; Dobrovolskaia,Marina; Gutekunst, Matthias
  3. The AAPS Journal. 2025, Apr 25; 27(4): 81.
  1. 2.   Clinical evaluation of commercial SARS-CoV-2 serological assays in a malaria endemic setting
  2. Dabitao, Djeneba; Shaw-Saliba, Kathryn; Konate, Drissa S; Highbarger,Helene; Lallemand,Perrine; Sanogo, Ibrahim; Rehman,Tauseef; Wague, Mamadou; Coulibaly, Nadie; Kone, Bourahima; Baya, Bocar; Diakite, Seidina A S; Samake, Seydou; Akpa, Esther; Tounkara, Moctar; Laverdure, Sylvain; Doumbia, Seydou; Lane, H Clifford; Diakite, Mahamadou; Dewar,Robin
  3. Journal of Immunological Methods. 2023, May 11; 113488.
  1. 3.   Paired heavy- and light-chain signatures contribute to potent SARS-CoV-2 neutralization in public antibody responses
  2. Banach, Bailey B.; Cerutti, Gabriele; Fahad, Ahmed S.; Shen, Chen-Hsiang; De Souza, Matheus Oliveira; Katsamba, Phinikoula S.; Tsybovsky, Yaroslav; Wang, Pengfei; Nair, Manoj S.; Huang, Yaoxing; Francino-Urdaniz, Irene M.; Steiner, Paul J.; Gutierrez-Gonzalez, Matias; Liu, Lihong; Acevedo, Sheila N. Lopez; Nazzari, Alexandra F.; Wolfe, Jacy R.; Luo, Yang; Olia, Adam S.; Teng, I-Ting; Yu, Jian; Zhou, Tongqing; Reddem, Eswar R.; Bimela, Jude; Pan, Xiaoli; Madan, Bharat; Laflin, Amy D.; Nimrania, Rajani; Yuen, Kwok-Yung; Whitehead, Timothy A.; Ho, David D.; Kwong, Peter D.; Shapiro, Lawrence; DeKosky, Brandon J.
  3. Cell Reports. 2021, Oct 5; 37(1):
  1. 4.   SARS-CoV-2 S2P spike ages through distinct states with altered immunogenicity
  2. Olia, Adam S.; Tsybovsky,Yaroslav; Chen, Steven J.; Liu, Cuiping; Nazzari, Alexandra F.; Ou, Li; Wang, Lingshu; Kong, Wing-Pui; Leung, Kwan; Liu, Tracy; Stephens,Tyler; Teng, I-Ting; Wang, Shuishu; Yang, Eun Sung; Zhang, Baoshan; Zhang, Yi; Zhou, Tongqing; Mascola, John R.; Kwong, Peter D.
  3. The Journal of biological chemistry. 2021, Oct; 297(4):
  1. 5.   Development and validation of an LC-MS/MS generic assay platform for small molecule drug bioanalysis
  2. Parise, Robert A; Covey, Joseph M; Hollingshead,Melinda; Srivastava,Apurva; Synold, Timothy W; Beumer, Jan H
  3. Journal of pharmaceutical and biomedical analysis. 2021, Sep 5; 203: 114185.
  1. 6.   Toward best practice in cancer mutation detection with whole-genome and whole-exome sequencing
  2. Xiao, Wenming; Ren, Luyao; Chen, Zhong; Fang, Li Tai; Zhao,Yongmei; Lack,Justin; Guan, Meijian; Zhu, Bin; Jaeger, Erich; Kerrigan, Liz; Blomquist, Thomas M.; Hung, Tiffany; Sultan, Marc; Idler, Kenneth; Lu, Charles; Scherer, Andreas; Kusko, Rebecca; Moos, Malcolm; Xiao, Chunlin; Sherry, Stephen T.; Abaan, Ogan D.; Chen, Wanqiu; Chen, Xin; Nordlund, Jessica; Liljedahl, Ulrika; Maestro, Roberta; Polano, Maurizio; Drabek, Jiri; Vojta, Petr; Koks, Sulev; Reimann, Ene; Madala, Bindu Swapna; Mercer, Timothy; Miller, Chris; Jacob, Howard; Truong, Tiffany; Moshrefi, Ali; Natarajan, Aparna; Granat, Ana; Schroth, Gary P.; Kalamegham, Rasika; Peters, Eric; Petitjean, Virginie; Walton,Ashley; Shen,Tsai-Wei; Talsania,Keyur; Vera, Cristobal Juan; Langenbach, Kurt; de Mars, Maryellen; Hipp, Jennifer A.; Willey, James C.; Wang, Jing; Shetty,Jyoti; Kriga,Yuliya; Raziuddin,Arati; Tran,Bao; Zheng, Yuanting; Yu, Ying; Cam, Margaret; Jailwala, Parthav; Meerzaman, Daoud; Chen, Qingrong; Yan, Chunhua; Ernest, Ben; Mehra, Urvashi; Jensen, Roderick; Jones, Wendell; Li, Jian-Liang; Papas, Brian N.; Pirooznia, Mehdi; Chen, Yun-Ching; Seifuddin, Fayaz; Li, Zhipan; Liu, Xuelu; Resch, Wolfgang; Wang, Jingya; Wu, Leihong; Yavas, Gokhan; Miles, Corey; Ning, Baitang; Tong, Weida; Mason, Christopher E.; Donaldson, Eric; Lababidi, Samir; Staudt, Louis M.; Tezak, Zivana; Hong, Huixiao; Wang, Charles; Shi, Leming
  3. Nature Biotechnology. 2021, Sep; 39(9): 1141-1150.
  1. 7.   Verification of CRISPR editing and finding transgenic inserts by Xdrop indirect sequence capture followed by short- and long-read sequencing
  2. Blondal, Thorarinn; Gamba, Cristina; Jagd, Lea Moller; Su,Ling; Demirov,Dimiter; Guo,Amber; Johnston, Camille M.; Riising, Eva M.; Wu,Xiaolin; Mikkelsen, Marie J.; Szabova,Ludmila; Mouritzen, Peter
  3. Methods. 2021, Jul; 191: 68-77.
  1. 8.   Structural basis of malaria RIFIN binding by LILRB1-containing antibodies
  2. Chen, Yiwei; Xu, Kai; Piccoli, Luca; Foglierini, Mathilde; Tan, Joshua; Jin, Wenjie; Gorman, Jason; Tsybovsky,Yaroslav; Zhang, Baoshan; Traore, Boubacar; Silacci-Fregni, Chiara; Daubenberger, Claudia; Crompton, Peter D.; Geiger, Roger; Sallusto, Federica; Kwong, Peter D.; Lanzavecchia, Antonio
  3. Nature. 2021, Apr; 592(7855): 639-+.
  1. 9.   Quality of life of HIV-negative, previously healthy individuals following cryptococcal meningoencephalitis
  2. Dean, Owen; Anjum, Seher; Scott, Terri; Ham, Lillian; Traino, Katherine; Wang,Jing; Hunsberger, Sally; Powers,John; Marr, Kieren A.; Snow, Joseph; Williamson, Peter R.
  3. Scientific Reports. 2021, Feb 11; 11(1):
  1. 10.   Crystallographic models of SARS-CoV-2 3CL(pro): in-death assessment of structure quality and validation
  2. Jaskolski, Mariusz; Dauter, Zbigniew; Shabalin, Ivan G.; Gilski, Miroslaw; Brzezinski, Dariusz; Kowiel, Marcin; Rupp, Bernhard; Wlodawer,Alexander
  3. IUCrJ. 2021, Feb 9; 8(Pt 2): 238-256.
  1. 11.   Effect of Capivasertib in Patients With an AKT1 E17K-Mutated Tumor NCI-MATCH Subprotocol EAY131-Y Nonrandomized Trial
  2. Kalinsky, Kevin; Hong, Fangxin; McCourt, Carolyn K.; Sachdev, Jasgit C.; Mitchell, Edith P.; Zwiebel, James A.; Doyle, L. Austin; McShane, Lisa M.; Li, Shuli; Gray, Robert J.; Rubinstein, Larry V.; Patton, David; Williams,Mickey; Hamilton, Stanley R.; Conley, Barbara A.; O'Dwyer, Peter J.; Harris, Lyndsay N.; Arteaga, Carlos L.; Chen, Alice P.; Flaherty, Keith T.
  3. JAMA oncology. 2021, Feb 1; 7(2): 271-278.
  1. 12.   Molecular Landscape and Actionable Alterations in a Genomically Guided Cancer Clinical Trial: National Cancer Institute Molecular Analysis for Therapy Choice (NCI-MATCH)
  2. Flaherty, Keith T; Gray, Robert J; Chen, Alice P; Li, Shuli; McShane, Lisa M; Patton, David; Hamilton, Stanley R; Williams,Mickey; Iafrate, A John; Sklar, Jeffrey; Mitchell, Edith P; Harris, Lyndsay N; Takebe, Naoko; Sims,David; Coffey,Brent; Fu,Tony; Routbort, Mark; Zwiebel, James A; Rubinstein, Larry V; Little, Richard F; Arteaga, Carlos L; Comis, Robert; Abrams, Jeffrey S; O'Dwyer, Peter J; Conley, Barbara A
  3. Journal of clinical oncology : official journal of the American Society of Clinical Oncology. 2020, NOV 20; 38(33): pii: JCO1903010.
  1. 13.   LC-MS-sMRM method development and validation of different classes of pain panel drugs and analysis of clinical urine samples
  2. Masood, M Athar; Veenstra, Timothy D
  3. Basic & clinical pharmacology & toxicology. 2020, Nov 01;
  1. 14.   Covid-19.bioreproducibility.org: A web resource for SARS-CoV-2-related structural models
  2. Brzezinski, Dariusz; Kowiel, Marcin; Cooper, David R; Cymborowski, Marcin; Grabowski, Marek; Wlodawer,Alexander; Dauter,Zbigniew; Shabalin, Ivan G; Gilski, Miroslaw; Rupp, Bernhard; Jaskolski, Mariusz; Minor, Wladek
  3. Protein science : a publication of the Protein Society. 2020, OCT 8;
  1. 15.   Ligand-centered assessment of SARS-CoV-2 drug target models in the Protein Data Bank
  2. Wlodawer,Alexander; Dauter,Zbigniew; Shabalin, Ivan; Gilski, Miroslaw; Brzezinski, Dariusz; Kowiel, Marcin; Minor, Wladek; Rupp, Bernhard; Jaskolski, Mariusz
  3. The FEBS journal. 2020, JUN 24;
  1. 16.   Nivolumab Is Effective in Mismatch Repair-Deficient Noncolorectal Cancers: Results From Arm Z1D-A Subprotocol of the NCI-MATCH (EAY131) Study
  2. Azad, Nilofer S; Gray, Robert J; Overman, Michael J; Schoenfeld, Jonathan D; Mitchell, Edith P; Zwiebel, James A; Sharon, Elad; Streicher, Howard; Li, Shuli; McShane, Lisa M; Rubinstein, Larry; Patton, David R; Williams,Mickey; Coffey,Brent; Hamilton, Stanley R; Bahary, Nathan; Suga, J Marie; Hatoum, Hassan; Abrams, Jeffrey S; Conley, Barbara A; Arteaga, Carlos L; Harris, Lyndsay; O'Dwyer, Peter J; Chen, Alice P; Flaherty, Keith T
  3. Journal of clinical oncology : official journal of the American Society of Clinical Oncology. 2020, JAN 20; 38(3): 214-+.
  1. 17.   Estimating associations between antidepressant use and incident mild cognitive impairment in older adults with depression
  2. Han, Fang; Bonnett,Tyler; Brenowitz, Willa D; Teylan, Merilee A; Besser, Lilah M; Chen, Yen-Chi; Chan, Gary; Cao, Ke-Gang; Gao, Ying; Zhou, Xiao-Hua
  3. PloS one. 2020, JAN 17; 15(1): e0227924.
  1. 18.   Conformational Switch to a beta-Turn in a Staphylococcal Quorum Sensing Signal Peptide Causes a Dramatic Increase in Potency
  2. Vasquez, Joseph K.; West, Korbin H. J.; Yang, Tian; Polaske, Thomas J.; Cornilescu,Gabriel; Tonelli, Marco; Blackwell, Helen E.
  3. JOURNAL OF THE AMERICAN CHEMICAL SOCIETY. 2020, JAN 15; 142(2): 750-761.
  1. 19.   Structure of the primed state of the ATPase domain of chromatin remodeling factor ISWI bound to the nucleosome
  2. Chittori, Sagar; Hong, Jingjun; Bai, Yawen; Subramaniam,Sriram
  3. Nucleic acids research. 2019, SEP 26; 47(17): 9400-9409.
  1. 20.   Characterization by Empirical and Computational Methods of Dictyospiromide, an Intriguing Antioxidant Alkaloid from the Marine Alga Dictyota coriacea
  2. Yan, Pengcheng; Li, Ge; Wang, Chaojie; Wu, Jianzhang; Sun, Zhongmin; Martin, Gary E; Wang, Xiao; Reibarkh, Mikhail; Saurí, Josep; Gustafson,Kirk
  3. Organic letters. 2019, Sep 20; 21(18): 7577-7581.
  1. 21.   Agreement in Histological Assessment of Mitotic Activity Between Microscopy and Digital Whole Slide Images Informs Conversion for Clinical Diagnosis
  2. Wei,Bih; Halsey, Charles H; Hoover, Shelley B; Puri, Munish; Yang, Howard H; Gallas, Brandon D; Lee, Maxwell P; Chen, Weijie; Durham, Amy C; Dwyer, Jennifer E; Sánchez, Melissa D; Traslavina, Ryan P; Frank, Chad; Bradley, Charles; McGill, Lawrence D; Esplin, D Glen; Schaffer, Paula A; Cramer, Sarah D; Lyle, L Tiffany; Beck, Jessica; Buza, Elizabeth; Gong, Qi; Hewitt, Stephen M; Simpson, R Mark
  3. Academic pathology. 2019, JUL 11; 6
  1. 22.   A close look onto structural models and primary ligands of metallo-beta-plactamases
  2. Raczynska, Joanna E.; Shabalin, Ivan G.; Minor, Wladek; Wlodawer,Alexander; Jaskolski, Mariusz
  3. Drug resistance updates : reviews and commentaries in antimicrobial and anticancer chemotherapy. 2018, Sep; 40: 1-12.
  1. 23.   Detect, Correct, Retract: How to manage incorrect structural models
  2. Wlodawer, Alexander; Dauter, Zbigniew; Porebski, Przemyslaw J; Minor, Wladek; Stanfield, Robyn; Jaskolski, Mariusz; Pozharski, Edwin; Weichenberger, Christian X; Rupp, Bernhard
  3. The FEBS journal. 2018, FEB; 1742-464X:(3): 444-466.
  1. 24.   Comprehensive and Integrated Genomic Characterization of Adult Soft Tissue Sarcomas
  2. Lazar, Alexander J.; McLellan, Michael D.; Bailey, Matthew H.; Miller, Christopher A.; Appelbaum, Elizabeth L.; Cordes, Matthew G.; Fronick, Catrina C.; Fulton, Lucinda A.; Fulton, Robert S.; Mardis, Elaine R.; Schmidt, Heather K.; Wong, Winghing; Wilson, Richard K.; Yellapantula, Venkata; Radenbaugh, Amie J.; Hoadley, Katherine A.; Hayes, D. Neil; Parker, Joel S.; Wilkerson, Matthew D.; Auman, J. Todd; Balu, Saianand; Bodenheimer, Tom; Hoyle, Alan P.; Jefferys, Stuart R.; Jones, Corbin D.; Lehmann, Kjong-Van; Meng, Shaowu; Mieczkowski, Piotr A.; Mose, Lisle E.; Perou, Charles M.; Roach, Jeffrey; Senbabaoglu, Yasin; Shi, Yan; Simons, Janae V.; Skelly, Tara; Soloway, Matthew G.; Tan, Donghui; Veluvolu, Umadevi; Davis, Ian J.; Hepperla, Austin J.; Brohl, Andrew S.; Kasaian, Katayoon; Mungall, Karen; Sadeghi, Sara; Barthel, Floris P.; Verhaak, Roel; Hu, Xin; Chibon, Frederic; Cherniack, Andrew D.; Shih, Juliann; Beroukhim, Rameen; Meyerson, Matthew; Cibulskis, Carrie; Gabriel, Stacey B.; Saksena, Gordon; Schumacher, Steven E.; Bailey, Matthew H.; Gao, Qingsong; Wong, Winghing; Wyczalkowski, Matthew; Bowlby, Reanne; Robertson, A. Gordon; Ally, Adrian; Balasundaram, Miruna; Brooks, Denise; Carlsen, Rebecca; Chuah, Eric; Dhalla, Noreen; Holt, Robert A.; Jones, Steven J. M.; Lee, Darlene; Li, Irene; Ma, Yussanne; Marra, Marco A.; Mayo, Michael; Moore, Richard A.; Mungall, Andrew J.; Parker, Joel S.; Schein, Jacqueline E.; Sipahimalani, Payal; Tam, Angela; Thiessen, Nina; Wong, Tina; Danilova, Ludmila; Cope, Leslie; Baylin, Stephen B.; Bootwalla, Moiz S.; Lai, Phillip H.; Laird, Peter W.; Maglinte, Dennis T.; Van Den Berg, David J.; Weisenberger, Daniel J.; Wrangle, John; Drill, Esther; Shen, Ronglai; Iype, Lisa; Reynolds, Sheila M.; Shmulevich, Ilya; Yau, Christina; Armenia, Joshua; Liu, Eric Minwei; Benz, Christopher; Pastore, Alessandro; Sanchez-Vega, Francisco; Schultz, Nikolaus; Akbani, Rehan; Hegde, Apurva M.; Liu, Wenbin; Lu, Yiling; Mills, Gordon B.; Weinstein, John N.; Roszik, Jason; Anur, Pavana; Spellman, Paul; Abeshouse, Adam; Chen, Hsiao-Wei; Gao, Jianjiong; Heins, Zachary; Kundra, Ritika; Larsson, Erik; Ochoa, Angelica; Sanchez-Vega, Francisco; Sander, Chris; Schultz, Nikolaus; Socci, Nicholas; Zhang, Hongxin; Noble, Michael S.; Heiman, David I.; Kim, Jaegil; Chin, Lynda; Getz, Gad; Cho, Juok; Defreitas, Timothy; Frazer, Scott; Gehlenborg, Nils; Lawrence, Michael S.; Lin, Pei; Meier, Sam; Voet, Doug; Zhang, Hailei; Byers, Lauren; Diao, Lixia; Gay, Carl M.; Wang, Jing; Newton, Yulia; Cooper, Lee A. D.; Gutman, David A.; Lazar, Alexander J.; Lee, Sanghoon; Nalisnik, Michael; Bowen, Jay; Gastier-Foster, Julie M.; Gerken, Mark; Helsel, Carmen; Hobensack, Shital; Leraas, Kristen M.; Lichtenberg, Tara M.; Ramirez, Nilsa C.; Wise, Lisa; Zmuda, Erik; Anderson, Matthew L.; Castro, Patricia; Ittmann, Michael; Gordienko, Elena; Paklina, Oxana; Setdikova, Galiya; Raut, Chandrajit P.; Karlan, Beth Y.; Lester, Jenny; Belyaev, Dmitry; Fulidou, Victoria; Potapova, Olga; Voronina, Olga; Demetri, George D.; Ramalingam, Suresh S.; Behera, Madhusmita; Delman, Keith; Owonikoko, Taofeek K.; Sica, Gabriel L.; Boyd, Jeff; Magliocco, Anthony; Salner, Andrew; Bennett, Joesph; Iacocca, Mary; Swanson, Patricia; Dottino, Peter; Kalir, Tamara; Pereira, Elena; Akeredolu, Teniola; Crain, Daniel; Curley, Erin; Gardner, Johanna; Mallery, David; Morris, Scott; Paulauskis, Joseph; Penny, Robert; Shelton, Candace; Shelton, Troy; Thompson, Eric; Hoon, Dave B.; Parfitt, Jeremy; Birrer, Michael; Karseladze, Apollon; Mariamidze, Armaz; Dao, Fanny; Levine, Douglas A.; Olvera, Narciso; Maki, Robert G.; Bartlett, John; Eschbacher, Jennifer; Dubina, Michael; Mozgovoy, Evgeny; Fedosenko, Konstantin; Manikhas, Georgy; Sekhon, Harman; Ramirez, Nilsa; Lazar, Alexander J.; Ingram, Davis R.; Torres, Keila E.; DiSaia, Phil; Godwin, Andrew K.; Godwin, Eryn M.; Kuo, Hanluen; Madan, Rashna; Reilly, Colleen; Adebamowo, Clement; Adebamowo, Sally N.; Bocklage, Therese; Higgins, Kelly; Martinez, Cathleen; Auman, J. Todd; Boice, Lori; Grilley-Olson, Juneko E.; Huang, Mei; Perou, Amy H.; Thorne, Leigh B.; Rathmell, W. Kimryn; Gutmann, David H.; Singer, Samuel; Chudamani, Sudha; Liu, Jia; Lolla, Laxmi; Naresh, Rashi; Pihl, Todd; Sun, Qiang; Wan, Yunhu; Wu, Ye; Felau, Ina; Zenklusen, Jean C.; Demchok, John A.; Ferguson, Martin L.; Hutter, Carolyn M.; Sofia, Heidi J.; Tarnuzzer, Roy; Wang, Zhining; Yang, Liming; Zhang, Jiashan (Julia); Demicco, Elizabeth G.; Doyle, Leona A.; Hornick, Jason L.; Lazar, Alexander J.; Rubin, Brian P.; de Rijn, Matt van; Demetri, George D.; Baker, Laurence; Grilley-Olson, Juneko E.; Iype, Lisa; Lazar, Alexander J.; Lichtenberg, Tara M.; Raut, Chandrajit P.; Riedel, Richard F.; Demicco, Elizabeth G.; Ding, Li; Ladanyi, Marc; Lazar, Alexander J.; Novak, Janet E.; Sanchez-Vega, Francisco; Singer, Samuel; Van Tine, Brian A.; Byers, Lauren; Cope, Leslie; Cherniack, Andrew D.; Cooper, Lee A. D.; Davis, Ian J.; Davis, Lara E.; Demetri, George D.; Doyle, Leona A.; Drill, Esther; Godwin, Andrew K.; Grilley-Olsen, Juneko E.; Gutmann, David H.; Hayes, D. Neil; Hepperla, Austin J.; Hoadley, Katherine A.; Hoon, Dave B.; Hornick, Jason L.; Iype, Lisa; Kim, Jaegil; Maki, Robert G.; Pollock, Raphael E.; Raut, Chandrajit P.; Riedel, Richard F.; Robertson, A. Gordon; Rubin, Brian P.; Shih, Juliann; Weinstein, John N.; Wong, Winghing; Akbani, Rehan; Anderson, Matthew L.; Anur, Pavana; Bailey, Matthew H.; Benz, Christopher; Bowen, Jay; Bowlby, Reanne; Brohl, Andrew S.; Cherniack, Andrew D.; Cooper, Lee A. D.; Cope, Leslie; Danilova, Ludmila; Davis, Lara E.; Demetri, George D.; Gay, Carl M.; Godwin, Andrew K.; Grilley-Olson, Juneko E.; Gutman, David A.; Hegde, Apurva M.; Jones, Kevin B.; Kasaian, Katayoon; Ladanyi, Marc; Lazar, Alexander J.; Lee, Sanghoon; Leraas, Kristen M.; Lichtenberg, Tara M.; Martignetti, John A.; McLellan, Michael D.; Miller, Christopher A.; Mungall, Karen; Nalisnik, Michael; Noble, Michael S.; Raut, Chandrajit P.; Riedel, Richard F.; Robertson, A. Gordon; Roszik, Jason; Sadeghi, Sara; Sanchez-Vega, Francisco; Shen, Ronglai; Shih, Juliann; Tong, Pan; Torres, Keila E.; Yau, Christina; Zenklusen, Jean C.
  3. Cell. 2017, Nov 02; 171(4): 950-965.
  1. 25.   LC-MS-sMRM Method Development and Validation of Different Classes of Pain Panel Drugs and Analysis of Clinical Urine Samples
  2. Athar Masood, M; Veenstra, Timothy D
  3. Basic & Clinical Pharmacology & Toxicology. 2017, Aug 26;
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