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  1. 1.   Whole-genome sequencing of 1,083 HPV45 cases and controls identifies genetic variants associated with glandular cervical lesions
  2. Koestler, Aimee J; Nelson, Chase W; Yeager,Stella; Chen, Zigui; Mishra,Sambit; Burdett, Laurie; Dean, Michael; Suh-Burgmann, Elizabeth; Lorey, Thomas; Clifford, Gary M; Wentzensen, Nicolas; Castle, Philip E; Schiffman, Mark; Burk, Robert D; Mirabello, Lisa
  3. International Journal of Cancer. 2025, May 05;
  1. 2.   Prior SARS-Cov-2 infection affects adaptive immune responses to Omicron BA.4/BA.5 mRNA booster
  2. Wachter, Brianna T; Xu, Qin; Shi, Lihong; Burbelo, Peter D; Myint-Hpu, Kathy; Schwartzberg, Pamela L; Rehman,Tauseef; Dewar,Robin; Boswell, Kristin L; Koup, Richard A; Oguz, Cihan; Imberti, Luisa; Bellusci, Lorenza; Pourhashemi, Sara; Khurana, Surender; Manthiram, Kalpana; Notarangelo, Luigi D; Delmonte, Ottavia M
  3. The journal of Allergy and Clinical Immunology. . 2025, Mar 03;
  1. 3.   Adjuvants to the S1-subunit of the SARS-CoV-2 spike protein vaccine improve antibody and T cell responses and surrogate neutralization in mice
  2. Becker, William; Rebbani, Khadija; Duan, Zhijian; Valkov,Eugene; Bryant, Shawn; Ho, Mitchell; Berzofsky, Jay A; Olkhanud, Purevdorj B
  3. Scientific Reports. 2024, Nov 28; 14(1): 29609.
  1. 4.   African ancestry-derived APOL1 risk genotypes show proximal epigenetic associations
  2. Breeze, Charles E; Lin, Bridget M; Winkler,Cheryl; Franceschini, Nora
  3. BMC Genomics. 2024, May 08; 25(1): 452.
  1. 5.   Germline pathogenic variants associated with triple-negative breast cancer in US Hispanic and Guatemalan women using hospital and community-based recruitment strategies
  2. Godinez Paredes, Jesica M; Rodriguez, Isabel; Ren, Megan; Orozco, Anali; Ortiz, Jeremy; Albanez, Anaseidy; Jones, Catherine; Nahleh, Zeina; Barreda, Lilian; Garland,Lisa; Torres-Gonzalez, Edmundo; Wu,Dongjing; Luo,Wen; Liu,Jia; Argueta, Victor; Orozco, Roberto; Gharzouzi, Eduardo; Dean, Michael
  3. Breast Cancer Research and Treatment. 2024, Mar 23;
  1. 6.   Natural history of Ebola virus disease in rhesus monkeys shows viral variant emergence dynamics and tissue-specific host responses
  2. Normandin, Erica; Triana, Sergio; Raju, Siddharth S; Lan, Tammy C T; Lagerborg, Kim; Rudy, Melissa; Adams, Gordon C; DeRuff, Katherine C; Logue, James; Liu, David; Strebinger, Daniel; Rao, Arya; Messer, Katelyn S; Sacks, Molly; Adams, Ricky D; Janosko, Krisztina; Kotliar, Dylan; Shah, Rickey; Crozier,Ian; Rinn, John L; Melé, Marta; Honko, Anna N; Zhang, Feng; Babadi, Mehrtash; Luban, Jeremy; Bennett, Richard S; Shalek, Alex K; Barkas, Nikolaos; Lin, Aaron E; Hensley, Lisa E; Sabeti, Pardis C; Siddle, Katherine J
  3. Cell Genomics. 2023, Dec 13; 3(12): 100440.
  1. 7.   Sequencing-based functional assays for classification of BRCA2 variants in mouse ESCs
  2. Biswas,Kajal; Mitrophanov,Alex; Sahu,Sounak; Sullivan,Teresa; Southon,Eileen; Nousome,Darryl; Reid, Susan; Narula, Sakshi; Smolen, Julia; Sengupta, Trisha; Riedel-Topper, Maximilian; Kapoor, Medha; Babbar, Anav; Stauffer,Stacey; Cleveland, Linda; Tandon, Mayank; Malys,Tyler; Sharan,Shyam
  3. Cell Reports Methods. 2023, Nov 20; 3(11): 100628.
  1. 8.   Joint associations between established genetic susceptibility loci, pesticide exposures, and risk of prostate cancer
  2. Hurwitz, Lauren M; Beane Freeman, Laura E; Andreotti, Gabriella; Hofmann, Jonathan N; Parks, Christine G; Sandler, Dale P; Lubin, Jay H; Liu,Jia; Jones,Kristine; Berndt, Sonja I; Koutros, Stella
  3. Environmental Research. 2023, Nov 15; 237(Pt 2): 117063.
  1. 9.   HPV16 E7 Nucleotide Variants Found in Cancer-Free Subjects Affect E7 Protein Expression and Transformation
  2. Lou,Hong; Boland, Joseph F; Li,Hongchuan; Burk, Robert; Yeager, Meredith; Anderson,Steve; Wentzensen, Nicolas; Schiffman, Mark; Mirabello, Lisa; Dean, Michael
  3. Cancers. 2022, Oct 06; 14(19):
  1. 10.   Potent monoclonal antibodies neutralize Omicron sublineages and other SARS-CoV-2 variants
  2. Chen, Zhaochun; Zhang, Peng; Matsuoka, Yumiko; Tsybovsky,Yaroslav; West, Kamille; Santos, Celia; Boyd, Lisa F; Nguyen, Hanh; Pomerenke, Anna; Stephens,Tyler; Olia, Adam S; Zhang, Baoshan; De Giorgi, Valeria; Holbrook, Michael R; Gross, Robin; Postnikova, Elena; Garza, Nicole L; Johnson, Reed F; Margulies, David H; Kwong, Peter D; Alter, Harvey J; Buchholz, Ursula J; Lusso, Paolo; Farci, Patrizia
  3. Cell Reports. 2022, Sep 30; 41(5): 111528.
  1. 11.   Rare germline variants in PALB2 and BRCA2 in familial and sporadic chordoma
  2. Xia, Bing; Biswas,Kajal; Foo, Tzeh Keong; Torres, Thiago; Riedel-Topper, Maximilian; Southon,Eileen; Kang, Zhihua; Huo, Yanying; Reid,Susan; Stauffer,Stacey; Zhou,Weiyin; Zhu, Bin; Koka, Hela; Yepes, Sally; Brodie, Seth A; Jones,Kristine; Vogt,Aurelie; Zhu,Bin; Cater, Brian; Freedman, Neal D; Hicks,Belynda; Yeager, Meredith; Chanock, Stephen J; Couch, Fergus; Parry, Dilys M; Monteiro, Alvaro N; Goldstein, Alisa M; Carvalho, Marcelo A; Sharan,Shyam; Yang, Xiaohong R
  3. Human Mutation. 2022, Jun 28;
  1. 12.   Associations between APOL1 genetic variants and blood pressure in African American mothers and children from a U.S. pregnancy cohort: Modification by air pollution exposures
  2. Ni, Yu; Simpson, Claire L; Davis, Robert L; Szpiro, Adam A; Karr, Catherine J; Kovesdy, Csaba P; Hjorten, Rebecca C; Tylavsky, Frances A; Bush, Nicole R; LeWinn, Kaja Z; Winkler,Cheryl; Kopp, Jeffrey B; Obi, Yoshitsugu
  3. Environmental Research. 2022, Mar 28; 212
  1. 13.   Genetic variation within the human papillomavirus type 16 genome is associated with oropharyngeal cancer prognosis
  2. Lang Kuhs, K A; Faden, D L; Chen, L; Smith, D K; Pinheiro, M; Wood, C B; Davis, S; Yeager,Meredith; Boland, J F; Cullen, M; Steinberg, M; Bass, S; Wang, X; Liu, P; Mehrad, M; Tucker, T; Lewis, J S; Ferris, R L; Mirabello, L
  3. Annals of Oncology : official journal of the European Society for Medical Oncology. 2022, Mar 16; 33(6): 638-648.
  1. 14.   T cell reactivity to the SARS-CoV-2 Omicron variant is preserved in most but not all individuals
  2. Naranbhai, Vivek; Nathan, Anusha; Kaseke, Clarety; Berrios, Cristhian; Khatri, Ashok; Choi, Shawn; Getz, Matthew A; Tano-Menka, Rhoda; Ofoman, Onosereme; Gayton, Alton; Senjobe, Fernando; Zhao, Zezhou; St Denis, Kerri J; Lam, Evan C; Carrington,Mary; Garcia-Beltran, Wilfredo F; Balazs, Alejandro B; Walker, Bruce D; Iafrate, A John; Gaiha, Gaurav D
  3. Cell. 2022, Feb 03; 185
  1. 15.   A Pre-Vaccination Baseline of SARS-CoV-2 Genetic Surveillance and Diversity in the United States
  2. Capoferri,Adam; Shao,Wei; Spindler,Jon; Coffin, John M.; Rausch,Jason; Kearney,Mary
  3. Viruses-Basel. 2022, Jan 7; 14(1):
  1. 16.   Molecular Evolution of Severe Acute Respiratory Syndrome Coronavirus 2: Hazardous and More Hazardous Strains Behind the Coronavirus Disease 2019 Pandemic and Their Targeting by Drugs and Vaccines
  2. Tuli, Hardeep Singh; Sak, Katrin; Aggarwal,Poonam; Iqubal, Ashif; Upadhaya, Sushil K.; Kaur, Jagjit; Kaur, Ginpreet; Aggarwal, Diwakar
  3. Frontiers in Cellular and Infection Microbiology. 2021, Dec 14; 11
  1. 17.   Sequential Analysis of Binding and Neutralizing Antibody in COVID-19 Convalescent Patients at 14 Months After SARS-CoV-2 Infection
  2. Rosati,Margherita; Terpos, Evangelos; Ntanasis-Stathopoulos, Ioannis; Agarwal,Mahesh; Bear,Jenifer; Burns, Robert; Hu, Xintao; Korompoki, Eleni; Donohue,Duncan; Venzon, David J; Dimopoulos, Meletios-Athanasios; Pavlakis,George; Felber,Barbara
  3. Frontiers in Immunology. 2021, Nov 26; 12: 793953.
  1. 18.   Structure-guided T cell vaccine design for SARS-CoV-2 variants and sarbecoviruses
  2. Nathan, Anusha; Rossin, Elizabeth J; Kaseke, Clarety; Park, Ryan J; Khatri, Ashok; Koundakjian, Dylan; Urbach, Jonathan M; Singh, Nishant K; Bashirova,Arman; Tano-Menka, Rhoda; Senjobe, Fernando; Waring, Michael T; Piechocka-Trocha, Alicja; Garcia-Beltran, Wilfredo F; Iafrate, A John; Naranbhai, Vivek; Carrington,Mary; Walker, Bruce D; Gaiha, Gaurav D
  3. Cell. 2021, Aug 19; 184(17): 4401-4413.e10.
  1. 19.   Joint Associations of Maternal-Fetal APOL1 Genotypes and Maternal Country of Origin With Preeclampsia Risk
  2. Hong, Xiumei; Rosenberg, Avi Z.; Zhang, Boyang; Binns-Roemer,Elizabeth; David,Victor; Lv, Yiming; Hjorten, Rebecca C.; Reidy, Kimberly J.; Chen, Teresa K.; Wang, Guoying; Ji, Yuelong; Simpson, Claire L.; Davis, Robert L.; Kopp, Jeffrey B.; Wang, Xiaobin; Winkler,Cheryl
  3. American Journal of Kidney Diseases : the official Journal of the National Kidney Foundation. 2021, Jun; 77(6): 879-888.e1.
  1. 20.   Rare Germline Variants in Chordoma-Related Genes and Chordoma Susceptibility
  2. Yepes, Sally; Shah, Nirav N.; Bai, Jiwei; Koka, Hela; Li, Chuzhong; Gui, Songbai; McMaster, Mary Lou; Xiao, Yanzi; Jones,Kristine; Wang,Mingyi; Vogt,Aurelie; Zhu, Bin; Zhu,Bin; Hutchinson,Amy; Yeager,Meredith; Hicks,Belynda; Carter, Brian; Freedman, Neal D.; Beane-Freeman, Laura; Chanock, Stephen J.; Zhang, Yazhuo; Parry, Dilys M.; Yang, Xiaohong R.; Goldstein, Alisa M.
  3. Cancers. 2021, Jun; 13(11):
  1. 21.   Temporal Dominance of B.1.1.7 over B.1.354 SARS-CoV-2 Variant: A Hypothesis Based on Areas of Variant Co-Circulation
  2. Kostaki, Evangelia Georgia; Tseti, Ioulia; Tsiodras, Sotirios; Pavlakis,George; Sfikakis, Petros P.; Paraskevis, Dimitrios
  3. Life (Basel, Switzerland). 2021, May; 11(5):
  1. 22.   Low-level variant calling for non-matched samples using a position-based and nucleotide-specific approach
  2. Dudley, Jeffrey N.; Hong, Celine S.; Hawari, Marwan A.; Shwetar, Jasmine; Sapp, Julie C.; Lack, Justin; Shiferaw, Henoke; Johnston, Jennifer J.; Biesecker, Leslie G.
  3. BMC Bioinformatics. 2021, Apr 8; 22(1):
  1. 23.   Kidney disease and APOL1
  2. Yusuf, Aminu Abba; Govender, Melanie A.; Brandenburg, Jean-Tristan; Winkler,Cheryl
  3. Human Molecular Genetics. 2021, Mar 22; 30(R1): R129-R137.
  1. 24.   SARS-CoV-2 Entry Related Viral and Host Genetic Variations: Implications on COVID-19 Severity, Immune Escape, and Infectivity
  2. Huang,Szu-Wei; Wang, Sheng-Fan
  3. INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES. 2021, Mar 17; 22(6):
  1. 25.   Patterns of Human Leukocyte Antigen Class I and Class II Associations and Cancer
  2. Liu, Zhiwei; Derkach, Andriy; Yu, Kelly J.; Yeager, Meredith; Chang, Yu-Sun; Chen, Chien-Jen; Gyllensten, Ulf; Lan, Qing; Lee, Mei-Hsuan; McKay, James D.; Rothman, Nathaniel; Yang, Hwai-; Hildesheim, Allan; Pfeiffer, Ruth M.
  3. Cancer Research. 2021, Feb 15; 81(4): 1148-1152.
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