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  1. 1.   Revealing the mechanism of action of a first-in-class covalent inhibitor of KRASG12C (ON) and other functional properties of oncogenic KRAS by 31P NMR
  2. Sharma,Alok; Pei, Jun; Yang, Yue; Dyba,Marcin; Smith,Brian; Rabara,Dana; Larsen,Erik; Lightstone, Felice C; Esposito,Dom; Stephen,Andy; Wang, Bin; Beltran, Pedro J; Wallace, Eli; Nissley,Dwight; McCormick, Frank; Maciag,Anna
  3. The Journal of Biological Chemistry. 2024, Jan 16; 300(2): 105650.
  1. 2.   Crystal structure of Escherichia coli thiamine pyrophosphate-sensing riboswitch in the apo state
  2. Lee,Hyun Kyung; Lee,Yun-Tzai; Fan,Lixin; Wilt, Haley M; Conrad, Chelsie E; Yu,Ping; Zhang, Jinwei; Shi,Genbin; Ji,Xinhua; Wang,Yun-Xing; Stagno,Jason
  3. Structure (London, England : 1993). 2023, Jul 7; 31(7): 848-859..
  1. 3.   Small GTPase Ran: Depicting the nucleotide-specific conformational landscape of the functionally important C-terminus
  2. Czigleczki, Janka; de Resende Lara, Pedro Tulio; Dudas, Balint; Jang,Hyunbum; Perahia, David; Nussinov,Ruth; Balog, Erika
  3. Frontiers in Molecular Biosciences. 2023, Jan 16; 10: 1111574.
  1. 4.   Application of Molecular Dynamics to Expand Docking Program's Exploratory Capabilities and to Evaluate Its Predictions
  2. Kasprzak,Wojciech; Shapiro,Bruce
  3. Methods in Molecular Biology (Clifton, N.J.). 2023 2568: 75-101.
  1. 5.   Conformational dynamics of the hepatitis B virus pre-genomic RNA on multiple time scales: implications for viral replication
  2. Olenginski, Lukasz T; Kasprzak,Wojciech; Bergonzo, Christina; Shapiro,Bruce; Dayie, Theodore K
  3. Journal of Molecular Biology. 2022, May 17; 434(18): 167633.
  1. 6.   Coumarin luciferins and mutant luciferases for robust multi-component bioluminescence imaging
  2. Yao, Zi; Caldwell,Donald; Love, Anna C.; Kolbaba-Kartchner, Bethany; Mills, Jeremy H.; Schnermann,Martin; Prescher, Jennifer A.
  3. CHEMICAL SCIENCE. 2021, Aug 2;
  1. 7.   The mechanism driving a solid-solid phase transition in a biomacromolecular crystal
  2. Ramakrishnan, Saminathan; Stagno,Jason; Heinz,Will; Zuo, Xiaobing; Yu,Ping; Wang,Yun-Xing
  3. IUCrJ. 2021, Jul 01; 8(Pt 4): 655-664.
  1. 8.   A non-affinity purification process for GMP production of prefusion-closed HIV-1 envelope trimers from clades A and C for clinical evaluation
  2. Gulla, Krishana; Cibelli, Nicole; Cooper, Jonathan W.; Fuller, Haley C.; Schneiderman, Zachary; Witter, Sara; Zhang, Yaqiu; Changela, Anita; Geng, Hui; Hatcher, Christian; Narpala, Sandeep; Tsybovsky,Yaroslav; Zhang, Baoshan; McDermott, Adrian B.; Kwong, Peter D.; Gowetski, Daniel B.
  3. Vaccine. 2021, Jun 8; 39(25): 3379-3387.
  1. 9.   Inhibition of Nonfunctional Ras
  2. Nussinov,Ruth; Jang, Hyunbum; Gursoy, Attila; Keskin, Ozlem; Gaponenko, Vadim
  3. Cell Chemical Biology. 2021, Feb 18; 28(2): 121-133.
  1. 10.   The Role of Conformational Dynamics in the Recognition and Regulation of Ubiquitination
  2. Khago, Domarin; Fucci,Ian; Byrd,Robert
  3. Molecules (Basel, Switzerland). 2020, Dec 15; 25(24):
  1. 11.   Automated Design by Structure-Based Stabilization and Consensus Repair to Achieve Prefusion-Closed Envelope Trimers in a Wide Variety of HIV Strains
  2. Rawi, Reda; Rutten, Lucy; Lai, Yen-Ting; Olia, Adam S; Blokland, Sven; Juraszek, Jarek; Shen, Chen-Hsiang; Tsybovsky,Yaroslav; Verardi, Raffaello; Yang, Yongping; Zhang, Baoshan; Zhou, Tongqing; Chuang, Gwo-Yu; Kwong, Peter D; Langedijk, Johannes P M
  3. Cell reports. 2020, Nov 24; 33(8): 108432.
  1. 12.   Generalized enzymatic mechanism of catalysis by tetrameric L-asparaginases from mesophilic bacteria
  2. Strzelczyk,Pawel; Zhang,Di; Dyba,Marzena; Wlodawer,Alexander; Lubkowski,Jacek
  3. SCIENTIFIC REPORTS. 2020, OCT 15; 10(1):
  1. 13.   Increased Single-Spectrum Top-Down Protein Sequence Coverage in Trapping Mass Spectrometers with Chimeric Ion Loading
  2. Weisbrod, Chad R.; Anderson, Lissa C.; Greer, Joseph B.; Dehart,Caroline; Hendrickson, Christopher L.
  3. ANALYTICAL CHEMISTRY. 2020, SEP 15; 92(18): 12193-12200.
  1. 14.   Engineering and characterization of apH-sensitive homodimeric antiparallel coiled coil
  2. Nagarkar, Radhika P.; Fichman, Galit; Schneider,Joel
  3. PEPTIDE SCIENCE. 2020, AUG 14;
  1. 15.   Tailored design of protein nanoparticle scaffolds for multivalent presentation of viral glycoprotein antigens
  2. Ueda, George; Antanasijevic, Aleksandar; Fallas, Jorge A; Sheffler, William; Copps, Jeffrey; Ellis, Daniel; Hutchinson, Geoffrey B; Moyer, Adam; Yasmeen, Anila; Tsybovsky,Yaroslav; Park, Young-Jun; Bick, Matthew J; Sankaran, Banumathi; Gillespie, Rebecca A; Brouwer, Philip Jm; Zwart, Peter H; Veesler, David; Kanekiyo, Masaru; Graham, Barney S; Sanders, Rogier W; Moore, John P; Klasse, Per Johan; Ward, Andrew B; King, Neil P; Baker, David
  3. eLife. 2020, Aug 04; 9: pii: 9:e57659.
  1. 16.   Nucleotide-Specific Autoinhibition of Full-Length K-Ras4B Identified by Extensive Conformational Sampling
  2. Dudas, Balint; Merzel, Franci; Jang,Hyunbum; Nussinov,Ruth; Perahia, David; Balog, Erika
  3. Frontiers in molecular biosciences. 2020, JUL 10; 7: 145.
  1. 17.   Achieving pure spin effects by artifact suppression in methyl adiabatic relaxation experiments
  2. Chao,Fa-An; Khago,Domarin; Byrd,Robert
  3. Journal of biomolecular NMR. 2020, May; 74(4-5): 223-228.
  1. 18.   Heat Shock Factor 1 Is a Direct Antagonist of AMP-Activated Protein Kinase
  2. Su,Kuo-Hui; Dai, Siyuan; Tang,Zijian; Xu,Meng; Dai,Chengkai
  3. Molecular cell. 2019, Nov 21; 76(4): 546-561.e8.
  1. 19.   Conformational flexibility of adenine riboswitch aptamer in apo and bound states using NMR and an X-ray free electron laser
  2. Ding,Jienyu; Swain,Monalisa; Yu,Ping; Stagno,Jason; Wang,Yun-Xing
  3. Journal of biomolecular NMR. 2019, Oct 12; 73: 509-518.
  1. 20.   De novo design of selective membrane-active peptides via enzymatic control of their conformational bias on the cell surface
  2. Shi,Junfeng; Schneider,Joel
  3. Angewandte Chemie (International ed. in English). 2019, JUL 26;
  1. 21.   Structures of N-terminally processed KRAS provide insight into the role of N-acetylation
  2. Dharmaiah,Sathiya; Tran,Tim; Messing,Simon; Agamasu,Constance; Gillette,Bill; Yan,Wupeng; Waybright,Tim; Alexander,Patrick; Esposito,Dom; Nissley,Dwight; McCormick, Frank; Stephen,Andy; Simanshu,Dhirendra
  3. Scientific reports. 2019, Jul 19; 9(1): 10512.
  1. 22.   Developments in integrative modeling with dynamical interfaces
  2. Ozdemir, E. Sila; Nussinov,Ruth; Gursoy, Attila; Keskin, Ozlem
  3. CURRENT OPINION IN STRUCTURAL BIOLOGY. 2019, Jun; 56: 11-17.
  1. 23.   Allostery in Its Many Disguises: From Theory to Applications
  2. Wodak, Shoshana J.; Paci, Emanuele; Dokholyan, Nikolay; Berezovsky, Igor N.; Horovitz, Amnon; Li, Jing; Hilser, Vincent J.; Behar, Ivet; Karanicolas, John; Stock, Gerhard; Hamm, Peter; Stote, Roland H.; Eberhardt, Jerome; Chebaro, Yassmine; Dejaegere, Annick; Cecchini, Marco; Changeux, Jean-Pierre; Bolhuis, Peter G.; Vreede, Jocelyne; Faccioli, Pietro; Orioli, Simone; Ravasio, Riccardo; Yen, Le; Brito, Carolina; Wyart, Matthieu; Gkeka, Paraskevi; Rivalta, Ivan; Palermo, Giulia; Mccammon, J. Andrew; Panecka-Hofman, Joanna; Wade, Rebecca C.; Di Pizio, Antonella; Niv, Masha Y.; Nussinov,Ruth; Tsai,Chung-Jung; Jang,Hyunbum; Padhorny, Dzmitry; Kozakov, Dima; Mcleish, Tom
  3. Structure (London, England : 1993). 2019, Apr 2; 27(4): 566-578.
  1. 24.   Antigen binding allosterically promotes Fc receptor recognition
  2. Zhao, Jun; Nussinov, Ruth; Ma, Buyong
  3. mAbs. 2019, Jan; 11(1): 58-74.
  1. 25.   Structure-based design of a quadrivalent fusion glycoprotein vaccine for human parainfluenza virus types 1-4
  2. Stewart-Jones, Guillaume B E; Chuang, Gwo-Yu; Xu, Kai; Zhou, Tongqing; Acharya, Priyamvada; Tsybovsky, Yaroslav; Ou, Li; Zhang, Baoshan; Fernandez-Rodriguez, Blanca; Gilardi, Valentina; Silacci-Fregni, Chiara; Beltramello, Martina; Baxa, Ulrich; Druz, Aliaksandr; Kong, Wing-Pui; Thomas, Paul V; Yang, Yongping; Foulds, Kathryn E; Todd, John-Paul; Wei, Hui; Salazar, Andres M; Scorpio, Diana G; Carragher, Bridget; Potter, Clinton S; Corti, Davide; Mascola, John R; Lanzavecchia, Antonio; Kwong, Peter D
  3. Proceedings of the National Academy of Sciences of the United States of America. 2018, Nov 27; 115(48): 12265-12270.
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