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  1. 1.   Protective human monoclonal antibodies target conserved sites of vulnerability on the underside of influenza virus neuraminidase
  2. Lederhofer, Julia; Tsybovsky,Yaroslav; Nguyen, Lam; Raab, Julie E; Creanga, Adrian; Stephens,Tyler; Gillespie, Rebecca A; Syeda, Hubza Z; Fisher, Brian E; Skertic, Michelle; Yap, Christina; Schaub, Andrew J; Rawi, Reda; Kwong, Peter D; Graham, Barney S; McDermott, Adrian B; Andrews, Sarah F; King, Neil P; Kanekiyo, Masaru
  3. Immunity. 2024, Mar 12; 57(3): 574-586.e7.
  1. 2.   Phenotypic plasticity and reduced tissue retention of exhausted tumor-infiltrating T cells following neoadjuvant immunotherapy in head and neck cancer
  2. Sievers, Cem; Craveiro, Marco; Friedman, Jay; Robbins, Yvette; Yang, Xinping; Bai, Ke; Nguyen, Andy; Redman, Jason M; Chari,Raj; Soon-Shiong, Patrick; Schlom, Jeffrey; Gulley, James; Allen, Clint T
  3. Cancer Cell. 2023, Apr 12; 41(5): 887-902.e5.
  1. 3.   T cell reactivity to the SARS-CoV-2 Omicron variant is preserved in most but not all individuals
  2. Naranbhai, Vivek; Nathan, Anusha; Kaseke, Clarety; Berrios, Cristhian; Khatri, Ashok; Choi, Shawn; Getz, Matthew A; Tano-Menka, Rhoda; Ofoman, Onosereme; Gayton, Alton; Senjobe, Fernando; Zhao, Zezhou; St Denis, Kerri J; Lam, Evan C; Carrington,Mary; Garcia-Beltran, Wilfredo F; Balazs, Alejandro B; Walker, Bruce D; Iafrate, A John; Gaiha, Gaurav D
  3. Cell. 2022, Feb 03; 185
  1. 4.   Evidence of SARS-CoV-2-Specific T-Cell-Mediated Myocarditis in a MIS-A Case
  2. Vannella, Kevin M; Oguz,Cihan; Stein, Sydney R; Pittaluga, Stefania; Dikoglu, Esra; Kanwal, Arjun; Ramelli, Sabrina C; Briese, Thomas; Su, Ling; Wu, Xiaolin; Ramos-Benitez, Marcos J; Perez-Valencia, Luis J; Babyak, Ashley; Cha, Nu Ri; Chung, Joon-Yong; Ylaya, Kris; Madathil, Ronson J; Saharia, Kapil K; Scalea, Thomas M; Tran, Quincy K; Herr, Daniel L; Kleiner, David E; Hewitt, Stephen M; Notarangelo, Luigi D; Grazioli, Alison; Chertow, Daniel S
  3. Frontiers in Immunology. 2021, Dec 9; 12: 779026.
  1. 5.   Structure-guided T cell vaccine design for SARS-CoV-2 variants and sarbecoviruses
  2. Nathan, Anusha; Rossin, Elizabeth J; Kaseke, Clarety; Park, Ryan J; Khatri, Ashok; Koundakjian, Dylan; Urbach, Jonathan M; Singh, Nishant K; Bashirova,Arman; Tano-Menka, Rhoda; Senjobe, Fernando; Waring, Michael T; Piechocka-Trocha, Alicja; Garcia-Beltran, Wilfredo F; Iafrate, A John; Naranbhai, Vivek; Carrington,Mary; Walker, Bruce D; Gaiha, Gaurav D
  3. Cell. 2021, Aug 19; 184(17): 4401-4413.e10.
  1. 6.   HLA class-I-peptide stability mediates CD8+ T cell immunodominance hierarchies and facilitates HLA-associated immune control of HIV
  2. Kaseke, Clarety; Park, Ryan J; Singh, Nishant K; Koundakjian, Dylan; Bashirova,Arman; Garcia Beltran, Wilfredo F; Takou Mbah, Overbeck C; Ma, Jiaqi; Senjobe, Fernando; Urbach, Jonathan M; Nathan, Anusha; Rossin, Elizabeth J; Tano-Menka, Rhoda; Khatri, Ashok; Piechocka-Trocha, Alicja; Waring, Michael T; Birnbaum, Michael E; Baker, Brian M; Carrington,Mary; Walker, Bruce D; Gaiha, Gaurav D
  3. Cell reports. 2021, Jul 13; 36(2): 109378.
  1. 7.   Structural and genetic convergence of HIV-1 neutralizing antibodies in vaccinated non-human primates
  2. Cai, Fangping; Chen, Wei-Hung; Wu,Weimin; Jones, Julia A.; Choe, Misook; Gohain, Neelakshi; Shen, Xiaoying; LaBranche, Celia; Eaton, Amanda; Sutherland, Laura; Lee, Esther M.; Hernandez, Giovanna E.; Wu, Nelson R.; Scearce, Richard; Seaman, Michael S.; Moody, M. Anthony; Santra, Sampa; Wiehe, Kevin; Tomaras, Georgia D.; Wagh, Kshitij; Korber, Bette; Bonsignori, Mattia; Montefiori, David C.; Haynes, Barton F.; de Val, Natalia; Joyce, M. Gordon; Saunders, Kevin O.
  3. PLOS PATHOGENS. 2021, Jun; 17(6):
  1. 8.   Computationally Optimized SARS-CoV-2 MHC Class I and II Vaccine Formulations Predicted to Target Human Haplotype Distributions
  2. Liu, Ge; Carter, Brandon; Bricken, Trenton; Jain, Siddhartha; Viard,Mathias; Carrington,Mary; Gifford, David K
  3. Cell systems. 2020, AUG 26; 11(2): 131-144.e6.
  1. 9.   Immune Monitoring Reveals Fusion Peptide Priming to Imprint Cross-Clade HIV-Neutralizing Responses with a Characteristic Early B Cell Signature
  2. Cheng, Cheng; Duan, Hongying; Xu, Kai; Chuang, Gwo-Yu; Corrigan, Angela R; Geng, Hui; O'Dell, Sijy; Ou, Li; Chambers, Michael; Changela, Anita; Chen, Xuejun; Foulds, Kathryn E; Sarfo, Edward K; Jafari, Alexander J; Hill, Kurt R; Kong, Rui; Liu, Kevin; Todd, John P; Tsybovsky,Yaroslav; Verardi, Raffaello; Wang, Shuishu; Wang, Yiran; Wu, Winston; Zhou, Tongqing; Arnold, Frank J; Doria-Rose, Nicole A; Koup, Richard A; McDermott, Adrian B; Scorpio, Diana G; Worobey, Michael; Shapiro, Lawrence; Mascola, John R; Kwong, Peter D
  3. Cell reports. 2020, Aug 04; 32(5): 107981.
  1. 10.   Tailored design of protein nanoparticle scaffolds for multivalent presentation of viral glycoprotein antigens
  2. Ueda, George; Antanasijevic, Aleksandar; Fallas, Jorge A; Sheffler, William; Copps, Jeffrey; Ellis, Daniel; Hutchinson, Geoffrey B; Moyer, Adam; Yasmeen, Anila; Tsybovsky,Yaroslav; Park, Young-Jun; Bick, Matthew J; Sankaran, Banumathi; Gillespie, Rebecca A; Brouwer, Philip Jm; Zwart, Peter H; Veesler, David; Kanekiyo, Masaru; Graham, Barney S; Sanders, Rogier W; Moore, John P; Klasse, Per Johan; Ward, Andrew B; King, Neil P; Baker, David
  3. eLife. 2020, Aug 04; 9: pii: 9:e57659.
  1. 11.   Networks of HIV-1 Envelope Glycans Maintain Antibody Epitopes in the Face of Glycan Additions and Deletions
  2. Seabright, Gemma E; Cottrell, Christopher A; van Gils, Marit J; D'addabbo, Alessio; Harvey, David J; Behrens, Anna-Janina; Allen, Joel D; Watanabe, Yasunori; Scaringi, Nicole; Polveroni, Thomas M; Maker, Allison; Vasiljevic, Snezana; De Val Alda,Natalia; Sanders, Rogier W; Ward, Andrew B; Crispin, Max
  3. Structure (London, England : 1993). 2020, AUG 4; 28(8): 897-+.
  1. 12.   Co-immunization of DNA and Protein in the Same Anatomical Sites Induces Superior Protective Immune Responses against SHIV Challenge
  2. Felber,Barbara; Lu, Zhongyan; Hu, Xintao; Valentin,Antonio; Rosati,Margherita; Remmel, Christopher A L; Weiner, Joshua A; Carpenter, Margaret C; Faircloth, Katelyn; Stanfield-Oakley, Sherry; Williams, Wilton B; Shen, Xiaoying; Tomaras, Georgia D; LaBranche, Celia C; Montefiori, David; Trinh, Hung V; Rao, Mangala; Alam, Munir S; Vandergrift, Nathan A; Saunders, Kevin O; Wang, Yunfei; Rountree, Wes; Das, Jishnu; Alter, Galit; Reed, Steven G; Aye, Pyone P; Schiro, Faith; Pahar, Bapi; Dufour, Jason P; Veazey, Ronald S; Marx, Preston A; Venzon, David J; Shaw, George M; Ferrari, Guido; Ackerman, Margaret E; Haynes, Barton F; Pavlakis,George
  3. Cell reports. 2020, May 12; 31(6): 107624.
  1. 13.   Blocking a4ß7 integrin binding to SIV does not improve virologic control
  2. Iwamoto, Nami; Mason, Rosemarie D; Song, Kaimei; Gorman, Jason; Welles, Hugh C; Arthos, James; Cicala, Claudia; Min, Susie; King, Hannah A D; Belli, Aaron J; Reimann, Keith A; Foulds, Kathryn E; Kwong, Peter D; Lifson,Jeffrey; Keele,Brandon; Roederer, Mario
  3. Science (New York, N.Y.). 2019, Sep 06; 365(6457): 1033-1036.
  1. 14.   Longitudinal Analysis Reveals Early Development of Three MPER-Directed Neutralizing Antibody Lineages from an HIV-1-Infected Individual
  2. Krebs, Shelly J.; Kwon, Young D.; Schramm, Chaim A.; Law, William H.; Donofrio, Gina; Zhou, Kenneth H.; Gift, Syna; Dussupt, Vincent; Georgiev, Ivelin S.; Schatzle, Sebastian; McDaniel, Jonathan R.; Lai, Yen-Ting; Sastry, Mallika; Zhang, Baoshan; Jarosinski, Marissa C.; Ransier, Amy; Chenine, Agnes L.; Asokan, Mangaiarkarasi; Bailer, Robert T.; Bose, Meera; Cagigi, Alberto; Cale, Evan M.; Chuang, Gwo-Yu; Darko, Samuel; Driscoll, Jefferson; Druz, Aliaksandr; Gorman, Jason; Laboune, Farida; Louder, Mark K.; McKee, Krisha; Mendez, Letzibeth; Moody, M. Anthony; O'Sullivan, Anne Marie; Owen, Christopher; Peng, Dongjun; Rawi, Reda; Sanders-Buell, Eric; Shen, Chen-Hsiang; Shiakolas, Andrea R.; Stephens,Tyler; Tsybovsky,Yaroslav; Tucker, Courtney; Verardi, Raffaello; Wang, Keyun; Zhou, Jing; Zhou, Tongqing; Georgiou, George; Alam, S. Munir; Haynes, Barton F.; Rolland, Morgane; Matyas, Gary R.; Polonis, Victoria R.; McDermott, Adrian B.; Douek, Daniel C.; Shapiro, Lawrence; Tovanabutra, Sodsai; Michael, Nelson L.; Mascola, John R.; Robb, Merlin L.; Kwong, Peter D.; Doria-Rose, Nicole A.
  3. IMMUNITY. 2019, MAR 19; 50(3): 677-+.
  1. 15.   Mosaic nanoparticle display of diverse influenza virus hemagglutinins elicits broad B cell responses
  2. Kanekiyo, Masaru; Joyce, M. Gordon; Gillespie, Rebecca A.; Gallagher, John R.; Andrews, Sarah F.; Yassine, Hadi M.; Wheatley, Adam K.; Fisher, Brian E.; Ambrozak, David R.; Creanga, Adrian; Leung, Kwanyee; Yang, Eun Sung; Boyoglu-Barnum, Seyhan; Georgiev, Ivelin S.; Tsybovsky,Yaroslav; Prabhakaran, Madhu S.; Andersen, Hanne; Kong, Wing-Pui; Baxa,Ulrich; Zephir, Kathryn L.; Ledgerwood, Julie E.; Koup, Richard A.; Kwong, Peter D.; Harris, Audray K.; McDermott, Adrian B.; Mascola, John R.; Graham, Barney S.
  3. Nature immunology. 2019, Mar; 20(3): 362-372.
  1. 16.   HIV peptidome-wide association study reveals patient-specific epitope repertoires associated with HIV control
  2. Arora, Jatin; McLaren, Paul J; Chaturvedi, Nimisha; Carrington, Mary; Fellay, Jacques; Lenz, Tobias L
  3. Proceedings of the National Academy of Sciences of the United States of America. 2019, Jan 15; 116(3): 944-949.
  1. 17.   In Silico Methods in Antibody Design
  2. Zhao, Jun; Nussinov, Ruth; Wu, Wen-Jin; Ma, Buyong
  3. ANTIBODIES. 2018, Sep; 7(3):
  1. 18.   Local and global anatomy of antibody-protein antigen recognition
  2. Wang, Meryl; Zhu, David; Zhu, Jianwei; Nussinov, Ruth; Ma, Buyong
  3. Journal of Molecular Recognition: JMR. 2018, May; 31(5): e2693.
  1. 19.   A Neutralizing Antibody Recognizing Primarily N-Linked Glycan Targets the Silent Face of the HIV Envelope
  2. Zhou, Tongqing; Zheng, Anqi; Baxa, Ulrich; Chuang, Gwo-Yu; Georgiev, Ivelin S; Kong, Rui; O'Dell, Sijy; Shahzad-Ul-Hussan, Syed; Shen, Chen-Hsiang; Tsybovsky, Yaroslav; Bailer, Robert T; Gift, Syna K; Louder, Mark K; McKee, Krisha; Rawi, Reda; Stevenson, Catherine H; Stewart-Jones, Guillaume B E; Taft, Justin D; Waltari, Eric; Yang, Yongping; Zhang, Baoshan; Shivatare, Sachin S; Shivatare, Vidya S; Lee, Chang-Chun D; Wu, Chung-Yi; Mullikin, James C; Bewley, Carole A; Burton, Dennis R; Polonis, Victoria R; Shapiro, Lawrence; Wong, Chi-Huey; Mascola, John R; Kwong, Peter D; Wu, Xueling
  3. Immunity. 2018, Mar 20; 48(3): 500-513.e6.
  1. 20.   Elimination of murine and human T-cell epitopes in recombinant immunotoxin eliminates neutralizing and anti-drug antibodies in vivo
  2. Mazor, Ronit; Crown, Devorah; Addissie, Selamawit; Jang, Youjin; Kaplan, Gilad; Pastan, Ira
  3. CELLULAR & MOLECULAR IMMUNOLOGY. 2017, 2017-05-01; 14(5): 432-442.
  1. 21.   Clinical Evaluation of Safety and Immunogenicity of PADRE-Cytomegalovirus (CMV) and Tetanus-CMV Fusion Peptide Vaccines With or Without PF03512676 Adjuvant
  2. La Rosa, C.; Longmate, J.; Lacey, S. F.; Kaltcheva, T.; Sharan, R.; Marsano, D.; Kwon, P.; Drake, J.; Williams, B.; Denison, S.; Broyer, S.; Couture, L.; Nakamura, R.; Kelsey, M. I.; Krieg, A. M.; Diamond, D. J.; Zaia, J. A.
  3. Journal of Infectious Diseases. 2012, Apr; 205(8): 1294-1304.
  1. 22.   HLA-A*7401-Mediated Control of HIV Viremia Is Independent of Its Linkage Disequilibrium with HLA-B*5703
  2. Matthews, P. C.; Adl, E.; Listgarten, J.; Leslie, A.; Mkhwanazi, N.; Carlson, J. M.; Harndahl, M.; Stryhn, A.; Payne, R. P.; Ogwu, A.; Huang, K. H. G.; Frater, J.; Paioni, P.; Kloverpris, H.; Jooste, P.; Goedhals, D.; van Vuuren, C.; Steyn, D.; Riddell, L.; Chen, F.; Luzzi, G.; Balachandran, T.; Ndung'u, T.; Buus, S.; Carrington, M.; Shapiro, R.; Heckerman, D.; Goulder, P. J. R.
  3. Journal of Immunology. 2011, May; 186(10): 5675-5686.
  1. 23.   Monoclonal Antibody m18 Paratope Leading to Dual Receptor Antagonism of HIV-1 gp120
  2. Gift, S. K.; McFadden, K.; Zentner, I. J.; Rajagopal, S.; Zhang, M. Y.; Dimitrov, D. S.; Chaiken, I. M.
  3. Biochemistry. 2011, Apr; 50(14): 2769-2779.
  1. 24.   Carbohydrates Contribute to the Interactions between Cockroach Allergen Bla g 2 and a Monoclonal Antibody
  2. Li, M.; Gustchina, A.; Glesner, J.; Wunschmann, S.; Vailes, L. D.; Chapman, M. D.; Pomes, A.; Wlodawer, A.
  3. Journal of Immunology. 2011, Jan; 186(1): 333-340.
  1. 25.   Effects of Hapten Density on the Induced Antibody Repertoire
  2. Li, Q. A.; Rodriguez, L. G.; Farnsworth, D. F.; Gildersleeve, J. C.
  3. Chembiochem. 2010, Aug 16; 11(12): 1686-1691.
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