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  1. 1.   A patient-derived cell model for malignant transformation in IDH-mutant glioma
  2. Kim, Olga; Sergi, Zach; Yu, Guangyang; Yamamoto, Kazutoshi; Quezado, Martha; Abdullaev, Zied; Crooks, Danel R; Kishimoto, Shun; Li, Qi; Lu, Peng; Blackman, Burchelle; Andresson,Thorkell; Wu,Xiaolin; Tran,Bao; Wei, Jun S; Zhang, Wei; Zhang, Meili; Song, Hua; Khan, Javed; Krishna, Murali C; Brender, Jeffrey R; Wu, Jing
  3. Acta Neuropathologica Communications. 2024, Sep 10; 12(1): 148.
  1. 2.   Early Intervention in STAT3 Dominant-Negative Disease
  2. An, Zixiao Annie; Williams, Kelli W; Urban,Amanda; Ali, Sania; Roy, Susan; Lafeer, Christine; Heimall, Jennifer; Dimitriades, Victoria R; Davis, Joie; Kong, Heidi H; Cowen, Edward W; Holland, Steven M; Freeman, Alexandra F
  3. The Journal of Allergy and Clinical Immunology. In Practice. 2023, Sep 06;
  1. 3.   Innate Immune Stimulation Using 3D Wireframe DNA Origami
  2. Du, Rebecca R; Cedrone,Edward; Romanov, Anna; Falkovich, Reuven; Dobrovolskaia,Marina; Bathe, Mark
  3. ACS Nano. 2022, Dec 02;
  1. 4.   Comparative microsomal proteomics of a model lung cancer cell line NCI-H23 reveals distinct differences between molecular profiles of 3D and 2D cultured cells
  2. Kaczmarczyk,Jan; Roberts,Rhonda; Luke,Brian; Chan,King; Van Wagoner, Carly M; Felder, Robin A; Saul, Richard G; Simona, Colantonio; Blonder,Josip
  3. Oncotarget. 2021, Sep 28; 12(20): 2022-2038.
  1. 5.   nightshift: A Python program for plotting simulated NMR spectra from assigned chemical shifts from the Biological Magnetic Resonance Data Bank
  2. Fucci,Ian; Byrd,Robert
  3. Protein Science. 2021, Sep 13;
  1. 6.   Controlled Organization of Inorganic Materials Using Biological Molecules for Activating Therapeutic Functionalities
  2. Chandler, Morgan; Minevich, Brian; Roark, Brandon; Viard,Mathias; Johnson, M Brittany; Rizvi, Mehedi H; Deaton, Thomas A; Kozlov, Seraphim; Panigaj, Martin; Tracy, Joseph B; Yingling, Yaroslava G; Gang, Oleg; Afonin, Kirill A
  3. ACS applied materials & interfaces. 2021, Aug 25; 13(33): 39030-39041.
  1. 7.   The Mottled Capsid of the Salmonella Giant Phage SPN3US, a Likely Maturation Intermediate with a Novel Internal Shell
  2. Heymann, J Bernard; Wang, Bing; Newcomb, William W; Wu,Weimin; Winkler, Dennis C; Cheng, Naiqian; Reilly, Erin R; Hsia, Ru-Ching; Thomas, Julie A; Steven, Alasdair C
  3. Viruses. 2020, Aug 19; 12(9): pii: E910..
  1. 8.   Improved Retinal Organoid Differentiation by Modulating Signaling Pathways Revealed by Comparative Transcriptome Analyses with Development In Vivo
  2. Brooks, Matthew J; Chen, Holly Y; Kelley, Ryan A; Mondal, Anupam K; Nagashima,Kunio; De Val Alda,Natalia; Li, Tiansen; Chaitankar, Vijender; Swaroop, Anand
  3. Stem cell reports. 2019, Nov 12; 13(5): 891-905.
  1. 9.   KRAS G13D sensitivity to neurofibromin-mediated GTP hydrolysis
  2. Rabara,Dana; Tran,Tim; Dharmaiah,Sathiya; Stephens,Bob; McCormick, Frank; Simanshu,Dhirendra; Holderfield, Matthew
  3. Proceedings of the National Academy of Sciences of the United States of America. 2019, OCT 29; 116(44): 22122-22131.
  1. 10.   Design of a Peptide-Based Electronegative Hydrogel for the Direct Encapsulation, 3D Culturing, in Vivo Syringe-Based Delivery, and Long-Term Tissue Engraftment of Cells
  2. Yamada, Y.; Patel,Nimit; Kalen,Joseph; Schneider,Joel
  3. ACS APPLIED MATERIALS & INTERFACES. 2019, SEP 25; 11(38): 34688-34697.
  1. 11.   Transcriptional Bursting and Co-bursting Regulation by Steroid Hormone Release Pattern and Transcription Factor Mobility
  2. Stavreva, Diana A; Garcia, David A; Fettweis, Gregory; Gudla, Prabhakar R; Zaki,George; Soni, Vikas; McGowan, Andrew; Williams, Geneva; Huynh, Anh; Palangat, Murali; Schiltz, R Louis; Johnson, Thomas A; Presman, Diego M; Ferguson, Matthew L; Pegoraro, Gianluca; Upadhyaya, Arpita; Hager, Gordon L
  3. Molecular cell. 2019, SEP 19; 75(6): 1161-+.
  1. 12.   Killer cell immunoglobulin-like receptor 3DL1 variation modifies HLA-B*57 protection against HIV-1
  2. Martin, Pat; Naranbhai, Vivek; Shea, Patrick R.; Qi, Ying; Ramsuran, Veron; Vince, Nicolas; Gao, Xiaojiang; Thomas, Rasmi; Brumme, Zabrina L.; Carlson, Jonathan M.; Wolinsky, Steven M.; Goedert, James J.; Walker, Bruce D.; Segal, Florencia P.; Deeks, Steven G.; Haas, David W.; Migueles, Stephen A.; Connors, Mark; Michael, Nelson; Fellay, Jacques; Gostick, Emma; Llewellyn-Lacey, Sian; Price, David A.; Lafont, Bernard A.; Pymm, Phillip; Saunders, Philippa M.; Widjaja, Jacqueline; Wong, Shu Cheng; Vivian, Julian P.; Rossjohn, Jamie; Brooks, Andrew G.; Carrington, Mary
  3. Journal of Clinical Investigation. 2018, May 01; 128(5): 1903-1912.
  1. 13.   3D Models of the NCI60 Cell Lines for Screening Oncology Compounds
  2. Selby, Michael; Delosh, Rene; Laudeman, Julie; Ogle, Chad; Reinhart, Russell; Silvers, Thomas; Lawrence, Scott; Kinders, Robert; Parchment, Ralph; Teicher, Beverly; Evans, David
  3. SLAS DISCOVERY. 2017, Jun; 22(5): 473-483.
  1. 14.   Nucleolus-like compartmentalization of the transcription machinery in fast-growing bacterial cells
  2. Jin, Ding; Mata Martin, Carmen; Sun, Zhe; Cagliero, Cedric; Zhou, Yan
  3. Critical reviews in biochemistry and molecular biology. 2017, Feb; 52(1): 96-106.
  1. 15.   CD164 identifies CD4+ T cells highly expressing genes associated with malignancy in Sezary syndrome: the Sezary signature genes, FCRL3, Tox, and miR-214
  2. Benoit, B. M.; Jariwala, N.; O'Connor, Geraldine; Oetjen, L. K.; Whelan, T. M.; Werth, A.; Troxel, A. B.; Sicard, H.; Zhu, L.; Miller, C.; Takeshita, J.; McVicar, Daniel; Kim, B. S.; Rook, A. H.; Wysocka, M.
  3. Archives of dermatological research. 2017, Jan; 309(1): 11-19.
  1. 16.   Fast and accurate modeling of protein-protein interactions by combining template-interface-based docking with flexible refinement
  2. Tuncbag, N.; Keskin, O.; Nussinov, R.; Gursoy, A.
  3. Proteins-Structure Function and Bioinformatics. 2012, Apr; 80(4): 1239-1249.
  1. 17.   Killer cell immunoglobulin-like receptor 3DL1-mediated recognition of human leukocyte antigen B
  2. Vivian, J. P.; Duncan, R. C.; Berry, R.; O'Connor, G. M.; Reid, H. H.; Beddoe, T.; Gras, S.; Saunders, P. M.; Olshina, M. A.; Widjaja, J. M. L.; Harpur, C. M.; Lin, J.; Maloveste, S. M.; Price, D. A.; Lafont, B. A. P.; McVicar, D. W.; Clements, C. S.; Brooks, A. G.; Rossjohn, J.
  3. Nature. 2011, Nov; 479(7373): 401-U155.
  1. 18.   Copy Number Variation of KIR Genes Influences HIV-1 Control
  2. Pelak, K.; Need, A. C.; Fellay, J.; Shianna, K. V.; Feng, S.; Urban, T. J.; Ge, D. L.; De Luca, A.; Martinez-Picado, J.; Wolinsky, S. M.; Martinson, J. J.; Jamieson, B. D.; Bream, J. H.; Martin, M. P.; Borrow, P.; Letvin, N. L.; McMichael, A. J.; Haynes, B. F.; Telenti, A.; Carrington, M.; Goldstein, D. B.; Alter, G.; Vaccine, N. C. H. A.
  3. Plos Biology. 2011, Nov; 9(11):
  1. 19.   Correlating SHAPE signatures with three-dimensional RNA structures
  2. Bindewald, E.; Wendeler, M.; Legiewicz, M.; Bona, M. K.; Wang, Y.; Pritt, M. J.; Le Grice, S. F. J.; Shapiro, B. A.
  3. Rna-a Publication of the Rna Society. 2011, Sep; 17(9): 1688-1696.
  1. 20.   HIV-1 adaptation to NK-cell-mediated immune pressure
  2. Alter, G.; Heckerman, D.; Schneidewind, A.; Fadda, L.; Kadie, C. M.; Carlson, J. M.; Oniangue-Ndza, C.; Martin, M.; Li, B.; Khakoo, S. I.; Carrington, M.; Allen, T. M.; Altfeld, M.
  3. Nature. 2011, Aug; 476(7358): 96-+.
  1. 21.   Polymorphism of amyloid beta peptide in different environments: implications for membrane insertion and pore formation
  2. Arce, F. T.; Jang, H. B.; Ramachandran, S.; Landon, P. B.; Nussinov, R.; Lal, R.
  3. Soft Matter. 2011, Jun 7; 7(11): 5267-5273.
  1. 22.   beta-Barrel Topology of Alzheimer's beta-Amyloid Ion Channels
  2. Jang, H.; Arce, F. T.; Ramachandran, S.; Capone, R.; Lal, R.; Nussinov, R.
  3. Journal of Molecular Biology. 2010, Dec; 404(5): 917-934.
  1. 23.   Structural Convergence Among Diverse, Toxic beta-Sheet Ion Channels
  2. Jang, H.; Arce, F. T.; Ramachandran, S.; Capone, R.; Lal, R.; Nussinov, R.
  3. Journal of Physical Chemistry B. 2010, Jul 29; 114(29): 9445-9451.
  1. 24.   3D visualization of HIV transfer at the virological synapse between dendritic cells and T cells
  2. Felts, R. L.; Narayan, K.; Estes, J. D.; Shi, D.; Trubey, C. M.; Fu, J.; Hartnell, L. M.; Ruthel, G. T.; Schneider, D. K.; Nagashima, K.; Bess, J. W.; Bavari, S.; Lowekamp, B. C.; Bliss, D.; Lifson, J. D.; Subramaniam, S.
  3. Proceedings of the National Academy of Sciences of the United States of America. 2010, Jul; 107(30): 13336-13341.
  1. 25.   Truncated beta-amyloid peptide channels provide an alternative mechanism for Alzheimer's Disease and Down syndrome
  2. Jang, H.; Arce, F. T.; Ramachandran, S.; Capone, R.; Azimova, R.; Kagan, B. L.; Nussinov, R.; Lal, R.
  3. Proceedings of the National Academy of Sciences of the United States of America. 2010, Apr; 107(14): 6538-6543.
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