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  1. 1.   Identification of molecular determinants of gene-specific bursting patterns by high-throughput imaging screens
  2. Sood, Varun; Holewinski,Ronald; Andresson,Thorkell; Larson, Daniel R; Misteli, Tom
  3. Molecular Cell. 2025, Feb 11;
  1. 2.   Modulation of the Substrate Preference of a MYST Acetyltransferase by a Scaffold Protein
  2. Sengupta, Raghuvir N; Brodsky, Oleg; Bingham, Patrick; Diehl, Wade C; Ferre, RoseAnn; Greasley, Samantha E; Johnson, Eric; Kraus, Michelle; Lieberman, Whitney; Meier,Jordan; Paul, Thomas A; Maegley, Karen A
  3. The Journal of Biological Chemistry. 2025, Feb 03; 108262.
  1. 3.   Cytidine acetylation yields a hypoinflammatory synthetic messenger RNA
  2. Nance,Kellie; Thalalla Gamage,Supuni; Alam,Md Masud; Yang,Acong; Levy, Michaella J; Link,Courtney; Florens, Laurence; Washburn, Michael P; Gu,Shuo; Oppenheim,Joost; Meier,Jordan
  3. Cell Chemical Biology. 2022, Feb 17; 29(2): 312-320.e7.
  1. 4.   Synthesis and Evaluation of a Stable Isostere of Malonyllysine
  2. Jing, Yihang; Bergholtz, Sarah E.; Omole, Anthony; Kulkarni, Rhushi A.; Zengeya, Thomas T.; Yoo,Euna; Meier,Jordan
  3. CHEMBIOCHEM. 2021, Nov 5;
  1. 5.   A proteogenomic portrait of lung squamous cell carcinoma
  2. Satpathy, Shankha; Krug, Karsten; Jean Beltran, Pierre M; Savage, Sara R; Petralia, Francesca; Kumar-Sinha, Chandan; Dou, Yongchao; Reva, Boris; Kane, M Harry; Avanessian, Shayan C; Vasaikar, Suhas V; Krek, Azra; Lei, Jonathan T; Jaehnig, Eric J; Omelchenko, Tatiana; Geffen, Yifat; Bergstrom, Erik J; Stathias, Vasileios; Christianson, Karen E; Heiman, David I; Cieslik, Marcin P; Cao, Song; Song, Xiaoyu; Ji, Jiayi; Liu, Wenke; Li, Kai; Wen, Bo; Li, Yize; Gümüs, Zeynep H; Selvan, Myvizhi Esai; Soundararajan, Rama; Visal, Tanvi H; Raso, Maria G; Parra, Edwin Roger; Babur, Özgün; Vats, Pankaj; Anand, Shankara; Schraink, Tobias; Cornwell, MacIntosh; Rodrigues, Fernanda Martins; Zhu, Houxiang; Mo, Chia-Kuei; Zhang, Yuping; da Veiga Leprevost, Felipe; Huang, Chen; Chinnaiyan, Arul M; Wyczalkowski, Matthew A; Omenn, Gilbert S; Newton, Chelsea J; Schurer, Stephan; Ruggles, Kelly V; Fenyö, David; Jewell, Scott D; Thiagarajan,Mathangi; Mesri, Mehdi; Rodriguez, Henry; Mani, Sendurai A; Udeshi, Namrata D; Getz, Gad; Suh,James; Li, Qing Kay; Hostetter, Galen; Paik, Paul K; Dhanasekaran, Saravana M; Govindan, Ramaswamy; Ding, Li; Robles, Ana I; Clauser, Karl R; Nesvizhskii, Alexey I; Wang, Pei; Carr, Steven A; Zhang, Bing; Mani, D R; Gillette, Michael A
  3. Cell. 2021, Aug 05; 184(16): 4348-4371.e40.
  1. 6.   Cytoplasmic-translocated Ku70 senses intracellular DNA and mediates interferon-lambda1 induction
  2. Sui,Hongyan; Chen,Qian; Imamichi,Tomozumi
  3. Immunology. 2021, Jul; 163(3): 323-337.
  1. 7.   Differential MUC22 expression by epigenetic alterations in human lung squamous cell carcinoma and adenocarcinoma
  2. Lin, Shuye; Tian, Cuimeng; Li, Jianhui; Liu, Bin; Ma, Teng; Chen,Keqiang; Gong,Wang; Wang,Jiming; Huang, Jiaqiang
  3. Oncology Reports. 2021, May; 45(5):
  1. 8.   Proteogenomic and metabolomic characterization of human glioblastoma
  2. Wang, Liang-Bo; Karpova, Alla; Gritsenko, Marina A.; Kyle, Jennifer E.; Cao, Song; Li, Yize; Rykunov, Dmitry; Colaprico, Antonio; Rothstein, Joseph H.; Hong, Runyu; Stathias, Vasileios; Cornwell, MacIntosh; Petralia, Francesca; Wu, Yige; Reva, Boris; Krug, Karsten; Pugliese, Pietro; Kawaler, Emily; Olsen, Lindsey K.; Liang, Wen-Wei; Song, Xiaoyu; Dou, Yongchao; Wendl, Michael C.; Caravan, Wagma; Liu, Wenke; Zhou, Daniel Cui; Ji, Jiayi; Tsai, Chia-Feng; Petyuk, Vladislav A.; Moon, Jamie; Ma, Weiping; Chu, Rosalie K.; Weitz, Karl K.; Moore, Ronald J.; Monroe, Matthew E.; Zhao, Rui; Yang, Xiaolu; Yoo, Seungyeul; Krek, Azra; Demopoulos, Alexis; Zhu, Houxiang; Wyczalkowski, Matthew A.; McMichael, Joshua F.; Henderson, Brittany L.; Lindgren, Caleb M.; Boekweg, Hannah; Lu, Shuangjia; Baral, Jessika; Yao, Lijun; Stratton, Kelly G.; Bramer, Lisa M.; Zink, Erika; Couvillion, Sneha P.; Bloodsworth, Kent J.; Satpathy, Shankha; Sieh, Weiva; Boca, Simina M.; Schurer, Stephan; Chen, Feng; Wiznerowicz, Maciej; Ketchum, Karen A.; Boja, Emily S.; Kinsinger, Christopher R.; Robles, Ana; Hiltke, Tara; Thiagarajan,Mathangi; Nesvizhskii, Alexey; Zhang, Bing; Mani, D. R.; Ceccarelli, Michele; Chen, Xi S.; Cottingham, Sandra L.; Li, Qing Kay; Kim, Albert H.; Fenyo, David; Ruggles, Kelly; Rodriguez, Henry; Mesri, Mehdi; Payne, Samuel H.; Resnick, Adam C.; Wang, Pei; Smith, Richard D.; Iavarone, Antonio; Chheda, Milan G.; Barnholtz-Sloan, Jill S.; Rodland, Karin D.; Liu, Tao; Ding, Li
  3. Cancer Cell. 2021, Apr 12; 39(4): 509-528.e20.
  1. 9.   Harnessing Ionic Selectivity in Acetyltransferase Chemoproteomic Probes
  2. Jing, Yihang; Montano, Jose L.; Levy, Michaella; Lopez, Jeffrey E.; Kung, Pei-Pei; Richardson, Paul; Krajewski, Krzysztof; Florens, Laurence; Washburn, Michael P.; Meier, Jordan L.
  3. ACS Chemical Biology. 2021, Jan 15; 16(1): 27-34.
  1. 10.   Visualizing RNA Cytidine Acetyltransferase Activity by Northern Blotting
  2. Bryson, Keri M; Thalalla Gamage,Supuni; Meier,Jordan
  3. Current protocols in chemical biology. 2020, Dec; 12(4): e89.
  1. 11.   Proteogenomic Landscape of Breast Cancer Tumorigenesis and Targeted Therapy
  2. Krug, Karsten; Jaehnig, Eric J; Satpathy, Shankha; Blumenberg, Lili; Karpova, Alla; Anurag, Meenakshi; Miles, George; Mertins, Philipp; Geffen, Yifat; Tang, Lauren C; Heiman, David I; Cao, Song; Maruvka, Yosef E; Lei, Jonathan T; Huang, Chen; Kothadia, Ramani B; Colaprico, Antonio; Birger, Chet; Wang, Jarey; Dou, Yongchao; Wen, Bo; Shi, Zhiao; Liao, Yuxing; Wiznerowicz, Maciej; Wyczalkowski, Matthew A; Chen, Xi Steven; Kennedy, Jacob J; Paulovich, Amanda G; Thiagarajan,Mathangi; Kinsinger, Christopher R; Hiltke, Tara; Boja, Emily S; Mesri, Mehdi; Robles, Ana I; Rodriguez, Henry; Westbrook, Thomas F; Ding, Li; Getz, Gad; Clauser, Karl R; Fenyö, David; Ruggles, Kelly V; Zhang, Bing; Mani, D R; Carr, Steven A; Ellis, Matthew J; Gillette, Michael A
  3. Cell. 2020, NOV 25; 183(5): 1436-+.
  1. 12.   Proteogenomic Characterization Reveals Therapeutic Vulnerabilities in Lung Adenocarcinoma
  2. Gillette, Michael A; Satpathy, Shankha; Cao, Song; Dhanasekaran, Saravana M; Vasaikar, Suhas V; Krug, Karsten; Petralia, Francesca; Li, Yize; Liang, Wen-Wei; Reva, Boris; Krek, Azra; Ji, Jiayi; Song, Xiaoyu; Liu, Wenke; Hong, Runyu; Yao, Lijun; Blumenberg, Lili; Savage, Sara R; Wendl, Michael C; Wen, Bo; Li, Kai; Tang, Lauren C; MacMullan, Melanie A; Avanessian, Shayan C; Kane, M Harry; Newton, Chelsea J; Cornwell, MacIntosh; Kothadia, Ramani B; Ma, Weiping; Yoo, Seungyeul; Mannan, Rahul; Vats, Pankaj; Kumar-Sinha, Chandan; Kawaler, Emily A; Omelchenko, Tatiana; Colaprico, Antonio; Geffen, Yifat; Maruvka, Yosef E; da Veiga Leprevost, Felipe; Wiznerowicz, Maciej; Gümüs, Zeynep H; Veluswamy, Rajwanth R; Hostetter, Galen; Heiman, David I; Wyczalkowski, Matthew A; Hiltke, Tara; Mesri, Mehdi; Kinsinger, Christopher R; Boja, Emily S; Omenn, Gilbert S; Chinnaiyan, Arul M; Rodriguez, Henry; Li, Qing Kay; Jewell, Scott D; Thiagarajan,Mathangi; Getz, Gad; Zhang, Bing; Fenyö, David; Ruggles, Kelly V; Cieslik, Marcin P; Robles, Ana I; Clauser, Karl R; Govindan, Ramaswamy; Wang, Pei; Nesvizhskii, Alexey I; Ding, Li; Mani, D R; Carr, Steven A
  3. Cell. 2020, Jul 09; 182(1): 200-225.e35.
  1. 13.   A Systems Chemoproteomic Analysis of Acyl-CoA/Protein Interaction Networks
  2. Levy, Michaella J; Montgomery, David C; Sardiu, Mihaela E; Montano,Jose; Bergholtz, Sarah E; Nance,Kellie; Thorpe,Abbey; Fox,Stephen; Lin, Qishan; Andresson,Thorkell; Florens, Laurence; Washburn, Michael P; Meier,Jordan
  3. Cell chemical biology. 2020, MAR 19; 27(3): 322-+.
  1. 14.   Proteogenomic Characterization of Endometrial Carcinoma
  2. Dou, Yongchao; Kawaler, Emily A; Cui Zhou, Daniel; Gritsenko, Marina A; Huang, Chen; Blumenberg, Lili; Karpova, Alla; Petyuk, Vladislav A; Savage, Sara R; Satpathy, Shankha; Liu, Wenke; Wu, Yige; Tsai, Chia-Feng; Wen, Bo; Li, Zhi; Cao, Song; Moon, Jamie; Shi, Zhiao; Cornwell, MacIntosh; Wyczalkowski, Matthew A; Chu, Rosalie K; Vasaikar, Suhas; Zhou, Hua; Gao, Qingsong; Moore, Ronald J; Li, Kai; Sethuraman, Sunantha; Monroe, Matthew E; Zhao, Rui; Heiman, David; Krug, Karsten; Clauser, Karl; Kothadia, Ramani; Maruvka, Yosef; Pico, Alexander R; Oliphant, Amanda E; Hoskins, Emily L; Pugh, Samuel L; Beecroft, Sean J I; Adams, David W; Jarman, Jonathan C; Kong, Andy; Chang, Hui-Yin; Reva, Boris; Liao, Yuxing; Rykunov, Dmitry; Colaprico, Antonio; Chen, Xi Steven; Czekanski, Andrzej; Jedryka, Marcin; Matkowski, Rafal; Wiznerowicz, Maciej; Hiltke, Tara; Boja, Emily; Kinsinger, Christopher R; Mesri, Mehdi; Robles, Ana I; Rodriguez, Henry; Mutch, David; Fuh, Katherine; Ellis, Matthew J; DeLair, Deborah; Thiagarajan,Mathangi; Mani, D R; Getz, Gad; Noble, Michael; Nesvizhskii, Alexey I; Wang, Pei; Anderson, Matthew L; Levine, Douglas A; Smith, Richard D; Payne, Samuel H; Ruggles, Kelly V; Rodland, Karin D; Ding, Li; Zhang, Bing; Liu, Tao; Fenyö, David
  3. Cell. 2020, Feb 20; 180(4): 729-748.e26.
  1. 15.   IL-27 posttranslationally regulates Y-box binding protein-1 to inhibit HIV-1 replication in human CD4+ T cells
  2. Poudyal, Deepak; Yang,Jun; Chen,Qian; Goswami,Suranjana; Adelsberger,Joe; Das,Sudipto; Herman, Andrew; Hornung, Ronald L; Imamichi,Tomozumi; Andresson,Thorkell
  3. AIDS (London, England). 2019, OCT 1; 33(12): 1819-1830.
  1. 16.   Epigenetic regulation by endogenous metabolite pharmacology
  2. Kulkarni, Rhushikesh A.; Montgomery,David; Meier,Jordan
  3. Current opinion in chemical biology. 2019, Aug; 51: 30-39.
  1. 17.   Chemical genomics reveals histone deacetylases are required for core regulatory transcription
  2. Gryder, Berkley E.; Wu, Lei; Woldemichael,Girma; Pomella, Silvia; Quinn, Taylor R.; Park, Paul M. C.; Cleveland, Abigail; Stanton, Benjamin Z.; Song, Young; Rota, Rossella; Wiest, Olaf; Yohe, Marielle E.; Shern, Jack F.; Qi, Jun; Khan, Javed
  3. Nature communications. 2019, Jul 8; 10(1):
  1. 18.   Metabolic Regulation of the Epitranscriptome
  2. Thomas,Justin; Batista, Pedro J.; Meier,Jordan
  3. ACS CHEMICAL BIOLOGY. 2019, MAR; 14(3): 316-324.
  1. 19.   Defining Metabolic and Nonmetabolic Regulation of Histone Acetylation by NSAID Chemotypes
  2. Shrimp, Jonathan; Garlick, Julie M.; Tezil, Tugsan; Sorum, Alexander W.; Worth, Andrew J.; Blair, Ian A.; Verdin, Eric; Snyder, Nathaniel W.; Meier, Jordan
  3. MOLECULAR PHARMACEUTICS. 2018, Mar; 15(3, Special Issue): 729-736.
  1. 20.   Bioorthogonal pro-metabolites for profiling short chain fatty acylation
  2. Sinclair, Wilson R.; Shrimp, Jonathan; Zengeya, Thomas T.; Kulkarni, Rhushikesh; Garlick, Julie M.; Luecke, Hans; Worth, Andrew J.; Blair, Ian A.; Snyder, Nathaniel W.; Meier, Jordan
  3. Chemical Science. 2018, Feb 07; 9(5): 1236-1241.
  1. 21.   Myc Regulates Chromatin Decompaction and Nuclear Architecture during B Cell Activation
  2. Kieffer-Kwon, Kyong-Rim; Nimura, Keisuke; Rao, Suhas S P; Xu, Jianliang; Jung, Seolkyoung; Pekowska, Aleksandra; Dose, Marei; Stevens, Evan; Mathe, Ewy; Dong, Peng; Huang, Su-Chen; Ricci, Maria Aurelia; Baranello, Laura; Zheng, Ying; Tomassoni Ardori, Francesco; Resch, Wolfgang; Stavreva, Diana; Nelson, Steevenson; McAndrew, Michael; Casellas, Adriel; Finn, Elizabeth; Gregory, Charles; St Hilaire, Brian Glenn; Johnson, Steven M; Dubois, Wendy; Cosma, Maria Pia; Batchelor, Eric; Levens, David; Phair, Robert D; Misteli, Tom; Tessarollo, Lino; Hager, Gordon; Lakadamyali, Melike; Liu, Zhe; Floer, Monique; Shroff, Hari; Aiden, Erez Lieberman; Casellas, Rafael
  3. Molecular Cell. 2017, Aug 17; 67(4): 566-578.
  1. 22.   DNA binding drives the association of BRG1/hBRM bromodomains with nucleosomes
  2. Morrison, Emma A.; Sanchez, Julio C.; Ronan, Jehnna L.; Farrell, Daniel P.; Varzavand, Katayoun; Johnson, Jenna K.; Gu, Brian X.; Crabtree, Gerald R.; Musselman, Catherine A.
  3. NATURE COMMUNICATIONS. 2017, Jul 14; 8
  1. 23.   Impact of a High-fat Diet on Tissue Acyl-CoA and Histone Acetylation Levels
  2. Carrer, Alessandro; Parris, Joshua L. D.; Trefely, Sophie; Henry, Ryan A.; Montgomery, David; Torres, AnnMarie; Viola, John M.; Kuo, Yin-Ming; Blair, Ian A.; Meier, Jordan; Andrews, Andrew J.; Snyder, Nathaniel W.; Wellen, Kathryn E.
  3. JOURNAL OF BIOLOGICAL CHEMISTRY. 2017, Feb 24; 292(8): 3312-3322.
  1. 24.   Discovering Targets of Non-enzymatic Acylation by Thioester Reactivity Profiling
  2. Kulkarni, Rhushikesh; Worth, Andrew J.; Zengeya, Thomas; Shrimp, Jonathan; Garlick, Julie M.; Roberts, Allison M.; Montgomery, David; Sourbier, Carole; Gibbs, Benjamin K.; Mesaros, Clementina; Tsai, Yien Che; Das, Sudipto; Chan, King; Zhou, Ming; Andresson, Thorkell; Weissman, Allan; Linehan, W. Marston; Blair, Ian A.; Snyder, Nathaniel W.; Meier, Jordan
  3. CELL CHEMICAL BIOLOGY. 2017, Feb 16; 24(2): 231-242.
  1. 25.   Single-Cell Exome Sequencing Reveals Single-Nucleotide Mutation Characteristics of a Kidney Tumor
  2. Xu, X.; Hou, Y.; Yin, X. Y.; Bao, L.; Tang, A. F.; Song, L. T.; Li, F. Q.; Tsang, S.; Wu, K.; Wu, H. J.; He, W. M.; Zeng, L.; Xing, M. J.; Wu, R. H.; Jiang, H.; Liu, X.; Cao, D. D.; Guo, G. W.; Hu, X. D.; Gui, Y. T.; Li, Z. S.; Xie, W. Y.; Sun, X. J.; Shi, M.; Cai, Z. M.; Wang, B.; Zhong, M. M.; Li, J. X.; Lu, Z. H.; Gu, N.; Zhang, X. Q.; Goodman, L.; Bolund, L.; Wang, J.; Yang, H. M.; Kristiansen, K.; Dean, M.; Li, Y. R.
  3. Cell. 2012, Mar; 148(5): 886-895.
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