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  1. 1.   Molecular and genetic characterization of sex-linked orange coat color in the domestic cat
  2. Kaelin, Christopher B; McGowan, Kelly A; Trotman, Joshaya C; Koroma, Donald C; David, Victor A; Menotti-Raymond, Marilyn; Graff, Emily C; Schmidt-Küntzel, Anne; Oancea, Elena; Barsh, Gregory S
  3. Current Biology : CB. 2025, May 12;
  1. 2.   ERK Allosteric Activation: The Importance of Two Ordered Phosphorylation Events
  2. Regev,Clil; Jang,Hyunbum; Nussinov,Ruth
  3. Journal of Molecular Biology. 2025, Apr 09; 169130.
  1. 3.   Metabolic dependency mapping identifies Peroxiredoxin 1 as a driver of resistance to ATM inhibition
  2. Li, Haojian; Furusawa, Takashi; Cavero, Renzo; Xiao, Yunjie; Chari,Raj; Wu,Xiaolin; Sun, David; Hartmann, Oliver; Dhall, Anjali; Holewinski,Ronald; Andresson,Thorkell; Karim,Baktiar; Villamor-Payà, Marina; Gallardo, Devorah; Day, Chi-Ping; Pal, Lipika R; Nair, Nishanth Ulhas; Ruppin, Eytan; Aladjem, Mirit I; Pommier, Yves; Diefenbacher, Markus E; Lim, Jung Mi; Levine, Rodney L; Stracker, Travis H; Weyemi, Urbain
  3. Redox Biology. 2025, Jan 19; 80: 103503.
  1. 4.   Slower CDK4 and faster CDK2 activation in the cell cycle
  2. Zhang,Wengang; Liu,Yonglan; Jang,Hyunbum; Nussinov,Ruth
  3. Structure (London, England : 1993). 2024, Apr 23;
  1. 5.   Tumor Suppression by Anti-Fibroblast Activation Protein Near-Infrared Photoimmunotherapy Targeting Cancer-Associated Fibroblasts
  2. Glabman, Raisa A; Olkowski, Colleen P; Minor, Hannah A; Bassel,Laura; Kedei, Noemi; Choyke, Peter L; Sato, Noriko
  3. Cancers. 2024, Jan 20; 16(2):
  1. 6.   HIV-1 Transcription Inhibition Using Small RNA-Binding Molecules
  2. Khatkar, Pooja; Mensah, Gifty; Ning, Shangbo; Cowen, Maria; Kim, Yuriy; Williams, Anastasia; Abulwerdi, Fardokht A; Zhao, Yunjie; Zeng, Chen; Le Grice, Stuart F J; Kashanchi, Fatah
  3. Pharmaceuticals (Basel, Switzerland). 2023, Dec 25; 17(1):
  1. 7.   Viral dissemination and immune activation modulate antiretroviral drug levels in lymph nodes of SIV-infected rhesus macaques
  2. Srinivasula,Sharat; Degrange, Paula; Perazzolo, Simone; Bonvillain, Andrew; Tobery, Amanda; Kaplan, Jacob; Jang, Hyukjin; Turnier, Refika; Davies, Michael; Cottrell, Mackenzie; Ho, Rodney J Y; Di Mascio, Michele
  3. Frontiers in Immunology. 2023, Sep 18; 14: 1213455.
  1. 8.   Ebola Virus Disease Features Hemophagocytic Lymphohistiocytosis/Macrophage Activation Syndrome in the Rhesus Macaque Model
  2. Liu, David X; Pahar, Bapi; Cooper, Timothy K; Perry, Donna L; Xu, Huanbin; Huzella, Louis M; Adams, Ricky D; Hischak, Amanda M W; Hart, Randy J; Bernbaum, Rebecca; Rivera, Deja; Anthony, Scott; St Claire, Marisa; Byrum, Russell; Cooper, Kurt; Reeder, Rebecca; Kurtz, Jonathan; Hadley, Kyra; Wada, Jiro; Crozier,Ian; Worwa, Gabriella; Bennett, Richard S; Warren, Travis; Holbrook, Michael R; Schmaljohn, Connie S; Hensley, Lisa E
  3. The Journal of Infectious Diseases. 2023, Jun 04;
  1. 9.   Severe mycobacterial IRIS in advanced HIV has features of hemophagocytic lymphohistiocytosis and requires prolonged immune suppression
  2. Rocco, Joseph M; Laidlaw, Elizabeth; Galindo, Frances; Anderson, Megan; Rupert,Adam; Higgins,Jeanette; Sortino, Ornella; Ortega-Villa, Ana M; Sheikh, Virginia; Roby, Gregg; Kuriakose, Safia; Lisco, Andrea; Manion, Maura; Sereti, Irini
  3. Clinical Infectious Diseases : an official publication of the Infectious Diseases Society of America. 2022, Sep 01;
  1. 10.   KSHV episome tethering sites on host chromosomes and regulation of latency-lytic switch by CHD4
  2. Kumar, Ashish; Lyu, Yuanzhi; Yanagihashi, Yuichi; Chantarasrivong, Chanikarn; Majerciak,Vladimir; Salemi, Michelle; Wang, Kang-Hsin; Inagaki, Tomoki; Chuang, Frank; Davis, Ryan R; Tepper, Clifford G; Nakano, Kazushi; Izumiya, Chie; Shimoda, Michiko; Nakajima, Ken-Ichi; Merleev, Alexander; Zheng, Zhi-Ming; Campbell, Mel; Izumiya, Yoshihiro
  3. Cell Reports. 2022, May 10; 39(6): 110788.
  1. 11.   Classical RAS proteins are not essential for paradoxical ERK activation induced by RAF inhibitors
  2. Lai, Lick Pui; Fer,Nicole; Burgan,William; Wall,Vanessa; Xu,Bingfang; Soppet,Daniel; Esposito,Dom; Nissley,Dwight; McCormick, Frank
  3. Proceedings of the National Academy of Sciences of the United States of America. 2022, Feb 01; 119(5):
  1. 12.   MYC assembles and stimulates topoisomerases 1 and 2 in a "topoisome"
  2. Das, Subhendu K.; Kuzin, Vladislav; Cameron, Donald P.; Sanford, Suzanne; Jha, Rajiv Kumar; Nie, Zuqin; Rosello, Marta Trullols; Holewinski,Ronald; Andresson,Thorkell; Wisniewski, Jan; Natsume, Toyoaki; Price, David H.; Lewis, Brian A.; Kouzine, Fedor; Levens, David; Baranello, Laura
  3. Molecular Cell. 2022, Jan 6; 82(1): 140-158. e12.
  1. 13.   Structure-guided bifunctional molecules hit a DEUBAD-lacking hRpn13 species upregulated in multiple myeloma
  2. Lu, Xiuxiu; Sabbasani, Venkata R.; Osei-Amponsa, Vasty; Evans, Christine N.; King, Julianna C.; Tarasov, Sergey G.; Dyba, Marzena; Das, Sudipto; Chan, King C.; Schwieters, Charles D.; Choudhari, Sulbha; Fromont, Caroline; Zhao, Yongmei; Tran, Bao; Chen, Xiang; Matsuo, Hiroshi; Andresson, Thorkell; Chari, Raj; Swenson, Rolf E.; Tarasova, Nadya I.; Walters, Kylie J.
  3. Nature Communications. 2021, Dec 16; 12(1):
  1. 14.   The mechanism of Raf activation through dimerization
  2. Zhang,Mingzhen; Maloney,Ryan; Jang,Hyunbum; Nussinov,Ruth
  3. Chemical Science. 2021, Dec 08; 12(47): 15609-15619.
  1. 15.   Signaling in the crowded cell
  2. Nussinov,Ruth; Tsai,Chung-Jung; Jang,Hyunbum
  3. Current Opinion in Structural Biology. 2021, Dec; 71: 43-50.
  1. 16.   The deubiquitinating enzyme USP37 enhances CHK1 activity to promote the cellular response to replication stress
  2. Stromberg, Benjamin R.; Singh, Mayank; Torres, Adrian E.; Burrows, Amy C.; Pal, Debjani; Insinna, Christine; Rhee, Yosup; Dickson, Andrew S.; Westlake,Christopher; Summers, Matthew K.
  3. The Journal of Biological Chemistry. 2021, Oct; 297(4):
  1. 17.   Application of CHyMErA Cas9-Cas12a combinatorial genome-editing platform for genetic interaction mapping and gene fragment deletion screening
  2. Aregger,Michael; Xing, Kun; Gonatopoulos Pournatzis,Thomas
  3. Nature Protocols . 2021, Sep 10; 16(10): 4722-4765.
  1. 18.   Defining baseline variability of serum tryptase levels improves accuracy in identifying anaphylaxis
  2. Mateja,Allyson; Wang, Qinlu; Chovanec, Jack; Kim, Jiwon; Wilson, Kenneth J; Schwartz, Lawrence B; Glover, Sarah C; Carter, Melody C; Metcalfe, Dean D; Brittain, Erica; Lyons, Jonathan J
  3. The Journal of allergy and clinical immunology. 2021, Aug 20;
  1. 19.   Targeted Deep Sequencing of Bladder Tumors Reveals Novel Associations between Cancer Gene Mutations and Mutational Signatures with Major Risk Factors
  2. Koutros, Stella; Rao, Nina; Moore, Lee E.; Nickerson, Michael L.; Lee, Donghyuk; Zhu, Bin; Pardo, Larissa A.; Baris, Dalsu; Schwenn, Molly; Johnson, Alison; Jones,Kristine; Garcia-Closas, Montserrat; Prokunina-Olsson, Ludmila; Silverman, Debra T.; Rothman, Nathaniel; Dean,Michael
  3. CLINICAL CANCER RESEARCH. 2021, Jul; 27(13): 3725-3733.
  1. 20.   B-Raf autoinhibition in the presence and absence of 14-3-3
  2. Zhang,Mingzhen; Jang,Hyunbum; Li, Zhigang; Sacks, David B.; Nussinov,Ruth
  3. Structure. 2021, Jul 1; 29(7): 768-777.e2.
  1. 21.   Carbohydrate antigen microarray analysis of serum IgG and IgM antibodies before and after adult porcine islet xenotransplantation in cynomolgus macaques
  2. Nanno, Yoshihide; Sterner, Eric; Gildersleeve,Jeffrey; Hering, Bernhard J.; Burlak, Christopher
  3. PLOS ONE. 2021, Jun 17; 16(6):
  1. 22.   Plasma Metabolomics Reveals Dysregulated Metabolic Signatures in HIV-Associated Immune Reconstitution Inflammatory Syndrome
  2. Pei, Luxin; Fukutani, Kiyoshi F.; Tiburcio, Rafael; Rupert,Adam; Dahlstrom, Eric W.; Galindo, Frances; Laidlaw, Elizabeth; Lisco, Andrea; Manion, Maura; Andrade, Bruno B.; Sereti, Irini
  3. FRONTIERS IN IMMUNOLOGY. 2021, JUN 15; 12
  1. 23.   Smac-mimetic enhances antitumor effect of standard chemotherapy in ovarian cancer models via Caspase 8-independent mechanism
  2. Hernandez, Lidia F.; Dull,Angie; Korrapati, Soumya; Annunziata, Christina M.
  3. Cell death discovery. 2021, Jun 04; 7(1):
  1. 24.   The mechanism of activation of monomeric B-Raf V600E
  2. Maloney,Ryan; Zhang,Mingzhen; Jang,Hyunbum; Nussinov,Ruth
  3. Computational and structural biotechnology journal. 2021, Jun 4; 19: 3349-3363.
  1. 25.   Normal Mode Analysis of KRas4B Reveals Partner Specific Dynamics
  2. Eren, Meryem; Tuncbag, Nurcan; Jang,Hyunbum; Nussinov,Ruth; Gursoy, Attila; Keskin, Ozlem
  3. The journal of physical chemistry. B. 2021, May 27; 125(20): 5210-5221.
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