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  1. 1.   Integration of Computational Docking into Anti-Cancer Drug Response Prediction Models
  2. Narykov, Oleksandr; Zhu, Yitan; Brettin, Thomas; Evrard,Yvonne; Partin, Alexander; Shukla, Maulik; Xia, Fangfang; Clyde, Austin; Vasanthakumari, Priyanka; Doroshow, James H; Stevens, Rick L
  3. Cancers. 2023, Dec 21; 16(1):
  1. 2.   Adenosine A2A Receptor Activation Enhances Blood-Tumor Barrier Permeability in a Rodent Glioma Model
  2. Vezina, Amelie; Manglani, Monica; Morris, DreeAnna; Foster, Brandon; McCord, Matthew; Song, Hua; Zhang, Meili; Davis, Dionne; Zhang, Wei; Bills, Jessica; Nagashima, Kunio; Shankarappa, Priya; Kindrick, Jessica; Walbridge, Stuart; Peer, Cody J.; Figg, William D.; Gilbert, Mark R.; McGavern, Dorian B.; Muldoon, Leslie L.; Jackson, Sadhana
  3. Molecular Cancer Research. 2021, Dec; 19(12): 2081-2095.
  1. 3.   Peptide hydrogels for affinity-controlled release of therapeutic cargo: Current and potential strategies
  2. Nambiar,Monessha; Schneider,Joel
  3. Journal of Peptide Science. 2021, Nov 7; e3377.
  1. 4.   Engineering well-expressed, V2-immunofocusing HIV-1 envelope glycoprotein membrane trimers for use in heterologous prime-boost vaccine regimens
  2. Crooks, Emma T.; Almanza, Francisco; D'Addabbo, Alessio; Duggan, Erika; Zhang, Jinsong; Wagh, Kshitij; Mou, Huihui; Allen, Joel D.; Thomas, Alyssa; Osawa, Keiko; Korber, Bette T.; Tsybovsky,Yaroslav; Cale, Evan; Nolan, John; Crispin, Max; Verkoczy, Laurent K.; Binley, James M.
  3. PLoS Pathogens. 2021, Oct; 17(10):
  1. 5.   A non-affinity purification process for GMP production of prefusion-closed HIV-1 envelope trimers from clades A and C for clinical evaluation
  2. Gulla, Krishana; Cibelli, Nicole; Cooper, Jonathan W.; Fuller, Haley C.; Schneiderman, Zachary; Witter, Sara; Zhang, Yaqiu; Changela, Anita; Geng, Hui; Hatcher, Christian; Narpala, Sandeep; Tsybovsky,Yaroslav; Zhang, Baoshan; McDermott, Adrian B.; Kwong, Peter D.; Gowetski, Daniel B.
  3. Vaccine. 2021, Jun 8; 39(25): 3379-3387.
  1. 6.   Computationally Optimized SARS-CoV-2 MHC Class I and II Vaccine Formulations Predicted to Target Human Haplotype Distributions
  2. Liu, Ge; Carter, Brandon; Bricken, Trenton; Jain, Siddhartha; Viard,Mathias; Carrington,Mary; Gifford, David K
  3. Cell systems. 2020, AUG 26; 11(2): 131-144.e6.
  1. 7.   Ras assemblies and signaling at the membrane
  2. Nussinov,Ruth; Tsai,Chung-Jung; Jang,Hyunbum
  3. Current opinion in structural biology. 2020, JUN; 62: 140-148.
  1. 8.   PDE6D Inhibitors with a New Design Principle Selectively Block K-Ras Activity
  2. Siddiqui, Farid A; Alam, Catharina; Rosenqvist, Petja; Ora, Mikko; Sabt, Ahmed; Manoharan, Ganesh Babu; Bindu,Lakshman; Okutachi, Sunday; Catillon, Marie; Taylor,Troy; Abdelhafez, Omaima M; Lönnberg, Harri; Stephen,Andy; Papageorgiou, Anastassios C; Virta, Pasi; Abankwa, Daniel
  3. ACS omega. 2020, Jan 14; 5(1): 832-842.
  1. 9.   Modulation of Target Antigen Density Improves CAR T-cell Functionality and Persistence
  2. Ramakrishna, Sneha; Highfill, Steven L.; Walsh, Zachary; Nguyen, Sang M.; Lei, Haiyan; Shern, Jack F.; Qin, Haiying; Kraft, Ira L.; Stetler-Stevenson, Maryalice; Yuan, Constance M.; Hwang, Jennifer D.; Feng,Yang; Zhu, Zhongyu; Dimitrov, Dimiter; Shah, Nirali N.; Fry, Terry J.
  3. CLINICAL CANCER RESEARCH. 2019, Sep 1; 25(17): 5329-5341.
  1. 10.   Glypican-3-Specific Antibody Drug Conjugates Targeting Hepatocellular Carcinoma
  2. Fu, Ying; Urban, Daniel J.; Nani, Roger R.; Zhang, Yi-Fan; Li, Nan; Fu, Haiying; Shah, Hamzah; Gorka, Alexander P.; Guha, Rajarshi; Chen, Lu; Hall, Matthew D.; Schnermann,Martin; Ho, Mitchell
  3. Hepatology (Baltimore, Md.). 2019, AUG; 70(2): 563-576.
  1. 11.   Prolonged evolution of the memory B cell response induced by a replicating adenovirus-influenza H5 vaccine
  2. Matsuda, Kenta; Huang, Jinghe; Zhou, Tongqing; Sheng, Zizhang; Kang, Byong H.; Ishida, Elise; Griesman, Trevor; Stuccio, Sarah; Bolkhovitinov, Lyuba; Wohlbold, Teddy J.; Chromikova, Veronika; Cagigi, Alberto; Leung, Kwanyee; Andrews, Sarah; Cheung, Crystal S. F.; Pullano, Alyssa A.; Plyler, Jason; Soto, Cinque; Zhang, Baoshan; Yang, Yongping; Joyce, M. Gordon; Tsybovsky,Yaroslav; Wheatley, Adam; Narpala, Sandeep R.; Guo, Yicheng; Darko, Sam; Bailer, Robert T.; Poole, April; Liang, C. Jason; Smith, Jon; Alexander, Jeff; Gurwith, Marc; Migueles, Stephen A.; Koup, Richard A.; Golding, Hana; Khurana, Surender; McDermott, Adrian B.; Shapiro, Lawrence; Krammer, Florian; Kwong, Peter D.; Connors, Mark
  3. SCIENCE IMMUNOLOGY. 2019, Apr 19; 4(34):
  1. 12.   Synthetic ligands for PreQ(1) riboswitches provide structural and mechanistic insights into targeting RNA tertiary structure
  2. Connelly,Colleen; Numata, Tomoyuki; Boer, Robert E.; Moon, Michelle H.; Sinniah, Ranu S.; Barchi,Joe; Ferre-D'Amare, Adrian R.; Schneekloth,Jay
  3. Nature communications. 2019, Apr 2; 10(1):
  1. 13.   Progress in targeting RAS with small molecule drugs
  2. McCormick, Frank
  3. The Biochemical journal. 2019, MAR 31; 476(2): 365-374.
  1. 14.   Longitudinal Analysis Reveals Early Development of Three MPER-Directed Neutralizing Antibody Lineages from an HIV-1-Infected Individual
  2. Krebs, Shelly J.; Kwon, Young D.; Schramm, Chaim A.; Law, William H.; Donofrio, Gina; Zhou, Kenneth H.; Gift, Syna; Dussupt, Vincent; Georgiev, Ivelin S.; Schatzle, Sebastian; McDaniel, Jonathan R.; Lai, Yen-Ting; Sastry, Mallika; Zhang, Baoshan; Jarosinski, Marissa C.; Ransier, Amy; Chenine, Agnes L.; Asokan, Mangaiarkarasi; Bailer, Robert T.; Bose, Meera; Cagigi, Alberto; Cale, Evan M.; Chuang, Gwo-Yu; Darko, Samuel; Driscoll, Jefferson; Druz, Aliaksandr; Gorman, Jason; Laboune, Farida; Louder, Mark K.; McKee, Krisha; Mendez, Letzibeth; Moody, M. Anthony; O'Sullivan, Anne Marie; Owen, Christopher; Peng, Dongjun; Rawi, Reda; Sanders-Buell, Eric; Shen, Chen-Hsiang; Shiakolas, Andrea R.; Stephens,Tyler; Tsybovsky,Yaroslav; Tucker, Courtney; Verardi, Raffaello; Wang, Keyun; Zhou, Jing; Zhou, Tongqing; Georgiou, George; Alam, S. Munir; Haynes, Barton F.; Rolland, Morgane; Matyas, Gary R.; Polonis, Victoria R.; McDermott, Adrian B.; Douek, Daniel C.; Shapiro, Lawrence; Tovanabutra, Sodsai; Michael, Nelson L.; Mascola, John R.; Robb, Merlin L.; Kwong, Peter D.; Doria-Rose, Nicole A.
  3. IMMUNITY. 2019, MAR 19; 50(3): 677-+.
  1. 15.   In Silico Methods in Antibody Design
  2. Zhao, Jun; Nussinov, Ruth; Wu, Wen-Jin; Ma, Buyong
  3. ANTIBODIES. 2018, Sep; 7(3):
  1. 16.   HIV-1 Integrase-Targeted Short Peptides Derived from a Viral Protein R Sequence
  2. Zhao, Xue Zhi; Métifiot, Mathieu; Kiselev, Evgeny; Kessl, Jacques J; Maddali, Kasthuraiah; Marchand, Christophe; Kvaratskhelia, Mamuka; Pommier, Yves; Burke, Terrence
  3. Molecules . 2018, Aug; 23(8): pii: E1858.
  1. 17.   alpha-Arylidene Diacylglycerol-Lactones (DAG-Lactones) as Selective Ras Guanine-Releasing Protein 3 (RasGRP3) Ligands
  2. Ann, Jihyae; Czikora, Agnes; Saini, Amandeep S.; Zhou, Xiaoling; Mitchell, Gary A.; Lewin, Nancy E.; Peach, Megan; Blumberg, Peter M.; Lee, Jeewoo
  3. Journal of Medicinal Chemistry. 2018, Jul 26; 61(14): 6261-6276.
  1. 18.   A dual-specific IGF-I/II human engineered antibody domain inhibits IGF signaling in breast cancer cells
  2. Chen, Zhizhen; Liu, Jie; Chu, Dafeng; Shan, Yaming; Ma, Guixing; Zhang, Hongmin; Zhang, Xiaohua Douglas; Wang, Pu; Chen, Qiang; Deng, Chuxia; Chen, Weizao; Dimitrov, Dimiter S.; Zhao, Qi
  3. International Journal of Biological Sciences. 2018, May 21; 14(7): 799-806.
  1. 19.   Preparation and Immunoaffinity Depletion of Fresh Frozen Tissue Homogenates for Mass Spectrometry-Based Proteomics in the Context of Drug Target/Biomarker Discovery
  2. Prieto, DaRue A; Chan, King; Johann, Donald J; Ye, Xiaoying; Whitely, Gordon; Blonder, Josip
  3. Methods in Molecular Biology. 2017, 2017; 1647: 71-90.
  1. 20.   Cyclostreptin Derivatives Specifically Target Cellular Tubulin and Further Map the Paclitaxel Site
  2. Calvo, E.; Barasoain, I.; Matesanz, R.; Pera, B.; Camafeita, E.; Pineda, O.; Hamel, E.; Vanderwal, C. D.; Andreu, J. M.; Lopez, J. A.; Diaz, J. F.
  3. Biochemistry. 2012, Jan; 51(1): 329-341.
  1. 21.   An overview of enzymatic reagents for the removal of affinity tags
  2. Waugh, D. S.
  3. Protein Expression and Purification. 2011, Dec; 80(2): 283-293.
  1. 22.   An NMR strategy for fragment-based ligand screening utilizing a paramagnetic lanthanide probe
  2. Saio, T.; Ogura, K.; Shimizu, K.; Yokochi, M.; Burke, T. R.; Inagaki, F.
  3. Journal of Biomolecular Nmr. 2011, Nov; 51(3): 395-408.
  1. 23.   Design, expression and characterization of a soluble single-chain functional human neonatal Fc receptor
  2. Feng, Y.; Gong, R.; Dimitrov, D. S.
  3. Protein Expression and Purification. 2011, Sep; 79(1): 66-71.
  1. 24.   Shortened Engineered Human Antibody CH2 Domains INCREASED STABILITY AND BINDING TO THE HUMAN NEONATAL Fc RECEPTOR
  2. Gong, R.; Wang, Y. P.; Feng, Y.; Zhao, Q.; Dimitrov, D. S.
  3. Journal of Biological Chemistry. 2011, Aug; 286(31): 27288-27293.
  1. 25.   Challenges in plasma membrane phosphoproteomics
  2. Orsburn, B. C.; Stockwin, L. H.; Newton, D. L.
  3. Expert Review of Proteomics. 2011, Aug; 8(4): 483-494.
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