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  1. 1.   Noncanonical circRNA biogenesis driven by alpha and gamma herpesviruses
  2. Dremel, Sarah E; Koparde,Vishal; Arbuckle, Jesse H; Hogan, Chad H; Kristie, Thomas M; Krug, Laurie T; Conrad, Nicholas K; Ziegelbauer, Joseph M
  3. The EMBO Journal. 2025, Mar 03;
  1. 2.   The differential interactomes of the KRAS splice variants identify BIRC6 as a ubiquitin ligase for KRAS4A
  2. Kochen Rossi, Juan; Nuevo-Tapioles, Cristina; O'Keefe, Rachel A; Hunkeler, Moritz; Schmoker, Anna M; Fissore-O'Leary, Mercedes; Su, Wenjuan; Ahearn, Ian M; Branco, Cristina; Cheong, Hakyung; Esposito,Dom; Clotea, Ioana; Ueberheide, Beatrix; Fischer, Eric S; Philips, Mark R
  3. Cell Reports. 2024, Dec 19; 44(1): 115087.
  1. 3.   Genome-scale exon perturbation screens uncover exons critical for cell fitness
  2. Xiao,Meisheng; Damodaran,Arun Prasath; Kumari,Bandana; Dickson, Ethan; Xing, Kun; On, Tyler A; Parab, Nikhil; King, Helen E; Perez, Alexendar R; Guiblet,Wilfried; Duncan,Gerard; Che,Anney; Chari,Raj; Andresson,Thorkell; Vidigal, Joana A; Weatheritt, Robert J; Aregger,Michael; Gonatopoulos Pournatzis,Thomas
  3. Molecular Cell. 2024, Jul 11; 84(13): 2553-2572.
  1. 4.   CD47-Dependent Regulation of Immune Checkpoint Gene Expression and MYCN mRNA Splicing in Murine CD8 and Jurkat T Cells
  2. Kaur, Sukhbir; Awad, Duha; Finney, Richard P; Meyer, Thomas J; Singh, Satya P; Cam, Margaret C; Karim,Baktiar; Warner,Andrew; Roberts, David D
  3. International Journal of Molecular Sciences. 2023, Jan 30; 24(3):
  1. 5.   Context-Dependent Function of Long Noncoding RNA PURPL in Transcriptome Regulation during p53 Activation
  2. Hartford, Corrine Corrina R; Shrestha, Roshan L; Pongor, Lorinc; Zhao,Yongmei; Chen, Xiongfong; Fromont,Caroline; Chaudhary, Ritu; Li, Xiao Ling; Pasterczyk, Katherine R; Kumar, Ravi; Muys, Bruna R; Tsitsipatis, Dimitrios; Chari,Raj; Gorospe, Myriam; Aladjem, Mirit I; Khan, Javed; Basrai, Munira A; Grammatikakis, Ioannis; Lal, Ashish
  3. Molecular and Cellular Biology. 2022, Nov 07; 42(12): e0028922.
  1. 6.   Systematic exploration of dynamic splicing networks reveals conserved multistage regulators of neurogenesis
  2. Han, Hong; Best, Andrew J; Braunschweig, Ulrich; Mikolajewicz, Nicholas; Li, Jack Daiyang; Roth, Jonathan; Chowdhury, Fuad; Mantica, Federica; Nabeel-Shah, Syed; Parada, Guillermo; Brown, Kevin R; O'Hanlon, Dave; Wei, Jiarun; Yao, Yuxi; Zid, Abdelrahman Abou; Comsa, Lim Caden; Jen, Mark; Wang, Jenny; Datti, Alessandro; Gonatopoulos Pournatzis,Thomas; Weatheritt, Robert J; Greenblatt, Jack F; Wrana, Jeffrey L; Irimia, Manuel; Gingras, Anne-Claude; Moffat, Jason; Blencowe, Benjamin J
  3. Molecular Cell. 2022, Jul 31; 82(16): 2982-2999.
  1. 7.   Epigenetic Regulation of DNA Repair Pathway Choice by MacroH2A1 Splice Variants Ensures Genome Stability
  2. Sebastian, Robin; Hosogane, Eri K; Sun, Eric G; Tran, Andy D; Reinhold, William C; Burkett,Sandra; Sturgill, David M; Gudla, Prabhakar R; Pommier, Yves; Aladjem, Mirit I; Oberdoerffer, Philipp
  3. Molecular cell. 2020, SEP 3; 79(5): 836-+.
  1. 8.   Novel, abundant Drosha isoforms are deficient in miRNA processing in cancer cells
  2. Dai,Lisheng; Hallmark, Lillian; Bofill De Ros,Xavier; Crouch, Howard; Chen, Sean; Shi, Tony; Yang,Acong; Lian, Chuanjiang; Zhao,Yongmei; Tran,Bao; Gu,Shuo
  3. RNA biology. 2020, AUG 31;
  1. 9.   Tuning of NK-Specific HLA-C Expression by Alternative mRNA Splicing
  2. Goodson-Gregg,Joseph; Rothbard,Brian; Zhang, Amy; Wright,Paul; Li,Hongchuan; Walker-Sperling,Victoria; Carrington,Mary; Anderson,Steve
  3. Frontiers in immunology. 2020, JAN 10; 10: 3034.
  1. 10.   Intragenic DNA methylation and BORIS-mediated cancer-specific splicing contribute to the Warburg effect
  2. Singh, Smriti; Narayanan, Sathiya Pandi; Biswas, Kajal; Gupta, Amit; Ahuja, Neha; Yadav, Sandhya; Panday, Rajendra Kumar; Samaiya, Atul; Sharan, Shyam; Shukla, Sanjeev
  3. Proceedings of the National Academy of Sciences of the United States of America. 2017, Oct 24; 114(43): 11440-11445.
  1. 11.   Direct Regulation of Alternative Splicing by SMAD3 through PCBP1 Is Essential to the Tumor-Promoting Role of TGF-beta
  2. Tripathi, V.; Sixt, K. M.; Gao, S.; Xu, X.; Huang, J.; Weigert, R.; Zhou, M.; Zhang, Y. E.
  3. Molecular Cell. 2016, 4-Oct; 64(3): 549-564.
  1. 12.   Alternative transcripts expressed by small bristles, the Drosophila melanogaster nxf1 gene
  2. Ivankova, N.; Tretyakova, I.; Lyozin, G. T.; Avanesyan, E.; Zolotukhin, A.; Zatsepina, O. G.; Evgen'ev, M. B.; Mamon, L. A.
  3. Gene. 2010, Jun; 458(1-2): 11-19.
  1. 13.   RNA regulation and cancer development
  2. Scholzova, E.; Malik, R.; Sevcik, J.; Kleibl, Z.
  3. Cancer Letters. 2007, Feb; 246(1-2): 12-23.
  1. 14.   Identification of a binding partner for the endothelial cell surface proteins TEM7 and TEM7R
  2. Nanda, A.; Buckhaults, P.; Seaman, S.; Agrawal, N.; Boutin, P.; Shankara, S.; Nacht, M.; Teicher, B.; Stampfl, J.; Singh, S.; Vogelstein, B.; Kinzler, K. W.; Croix, B. S.
  3. Cancer Research. 2004, DEC 1; 64(23): 8507-8511.
  1. 15.   Two essential splice lariat branchpoint sequences in one intron in a xeroderma pigmentosum DNA repair gene: mutations result in reduced XPC mRNA levels that correlate with cancer risk
  2. Khan, S. G.; Metin, A.; Gozukara, E.; Inui, H.; Shahlavi, T.; Muniz-Medina, V.; Baker, C. C.; Ueda, T.; Aiken, J. R.; Schneider, T. D.; Kraemer, K. H.
  3. Human Molecular Genetics. 2004 13(3): 343-352.
  1. 16.   cis-acting and trans-acting modulation of equine infectious anemia virus alternative RNA splicing
  2. Liao, H. J.; Baker, C. C.; Princler, G. L.; Derse, D.
  3. Virology. 2004 323(1): 131-140.
  1. 17.   C to A single nucleotide polymorphism in intron 18 of the human MST1R (RON) gene that maps at 3p21.3
  2. Angeloni, D.; Duh, F. M.; Moody, M.; Dean, M.; Zabarovsky, E. R.; Sentchenko, V.; Braga, E.; Lerman, M. I.
  3. Molecular and Cellular Probes. 2003, APR-JUN; 17(2-3): 55-57.
  1. 18.   Roles of viral and cellular proteins in the expression of alternatively spliced HTLV-1 pX mRNAs
  2. Princler, G. L.; Julias, J. G.; Hughes, S. H.; Derse, D.
  3. Virology. 2003 317(1): 136-145.
  1. 19.   Comparative characterization of lymphotoxin transcripts from human B- and T-cell lines, peripheral lymphocytes, and normal tissues
  2. Boitchenko, V. E.; Alimzhanov, M. B.; Turetskaya, R. L.; Ruhlmann, A.; Nordheim, A.; Kuprash, D. V.; Nedospasov, S. A.
  3. Molecular Biology. 2001 35(1): 115-121.
  1. 20.   Structure and promoter analysis of murine CAD and ICAD genes
  2. Kawane, K.; Fukuyama, H.; Adachi, M.; Sakahira, H.; Copeland, N. G.; Gilbert, D. J.; Jenkin, N. A.; Nagata, S.
  3. Cell Death and Differentiation. 1999 6(8): 745-752.
  1. 21.   Xeroderma Pigmentosum Group C Splice Mutation Associated With Autism and Hypoglycinemia
  2. Khan, S. G.; Levy, H. L.; Legerski, R.; Quackenbush, E.; Reardon, J. T.; Emmert, S.; Sancar, A.; Li, L.; Schneider, T. D.; Cleaver, J. E.; Kraemer, K. H.
  3. Journal of Investigative Dermatology. 1998 111(5): 791-796.
  1. 22.   Fli-1b Is Generated By Usage of Differential Splicing and Alternative Promoter
  2. Dhulipala, P. D. K.; Lee, L.; Rao, V. N.; Reddy, E. S. P.
  3. Oncogene. 1998 17(9): 1149-1157.
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