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  1. 1.   Structure-based design of glycoprotein subunit vaccines for mumps
  2. Loomis, Rebecca J; Lai, Yen-Ting; Sowers, Sun B; Fisher, Brian; Derrien-Colemyn, Alexandrine; Ambrozak, David R; Tsybovsky,Yaroslav; Crooke, Stephen N; Latner, Donald R; Kong, Wing-Pui; Ruckwardt, Tracy J; Plotkin, Stanley A; Kwong, Peter D; Mascola, John R; Graham, Barney S; Hickman, Carole J; Stewart-Jones, Guillaume B E
  3. Proceedings of the National Academy of Sciences of the United States of America. 2024, Nov 19; 121(47): e2404053121.
  1. 2.   Genome-scale exon perturbation screens uncover exons critical for cell fitness
  2. Xiao,Meisheng; Damodaran,Arun Prasath; Kumari,Bandana; Dickson, Ethan; Xing, Kun; On, Tyler A; Parab, Nikhil; King, Helen E; Perez, Alexendar R; Guiblet,Wilfried; Duncan,Gerard; Che,Anney; Chari,Raj; Andresson,Thorkell; Vidigal, Joana A; Weatheritt, Robert J; Aregger,Michael; Gonatopoulos Pournatzis,Thomas
  3. Molecular Cell. 2024, Jul 11; 84(13): 2553-2572.
  1. 3.   DOCK 6: Incorporating hierarchical traversal through precomputed ligand conformations to enable large-scale docking
  2. Balius,Trent; Tan, Y Stanley; Chakrabarti,Mayukh
  3. Journal of Computational Chemistry. 2023, Sep 25;
  1. 4.   Protocol for measuring BRAF autoinhibition in live cells using a proximity-based NanoBRET assay
  2. Smith,Russell; Morrison,Deborah
  3. STAR Protocols. 2023, Aug 16; 4(3): 102461.
  1. 5.   Rare disease variant curation from literature: assessing gaps with creatine transport deficiency in focus
  2. Lyons,Erica; Watson,Daniel; Alodadi,Mohammad; Haugabook, Sharie J; Tawa, Gregory J; Hannah-Shmouni, Fady; Porter, Forbes D; Collins, Jack R; Ottinger, Elizabeth A; Mudunuri,Uma
  3. BMC Genomics. 2023, Aug 16; 24(1): 460.
  1. 6.   Usability and Satisfaction Testing of Game-Based Learning Avatar-Navigated Mobile (GLAm), an App for Cervical Cancer Screening: Mixed Methods Study
  2. Wanberg, Lindsey J; Kim, Angela; Vogel, Rachel I; Sadak, Karim Thomas; Teoh, Deanna
  3. JMIR Formative Research. 2023, Aug 08; 7: e45541.
  1. 7.   Structure of Vibrio Phage XM1, a Simple Contractile DNA Injection Machine
  2. Wang,Jenny; Fokine, Andrei; Guo, Xinwu; Jiang, Wen; Rossmann, Michael G; Kuhn, Richard J; Luo, Zhu-Hua; Klose, Thomas
  3. Viruses. 2023, Jul 31; 15(8):
  1. 8.   Crystal Structure of an i-Motif from the HRAS Oncogene Promoter
  2. Li, Kevin S; Jordan, Deondre; Lin, Linda Y; McCarthy, Sawyer E; Schneekloth,Jay; Yatsunyk, Liliya A
  3. Angewandte Chemie (International ed. in English). 2023, Mar 30; e202301666.
  1. 9.   Development, Validation, and Utilization of a Luminex-Based SARS-CoV-2 Multiplex Serology Assay
  2. Roy, Daisy R; Kemp,Troy; Haynesworth,Katrina; Loftus,Sarah; Pinto,Ligia
  3. Microbiology Spectrum. 2023, Mar 16; e0389822.
  1. 10.   Structure of Helicobacter pylori dihydroneopterin aldolase suggests a fragment-based strategy for isozyme-specific inhibitor design
  2. Shaw,Gary; Fan,Lixin; Cherry,Scott; Shi,Genbin; Tropea, Joseph E; Ji,Xinhua
  3. Current Research in Structural Biology. 2023, Jan 30; 5: 100095.
  1. 11.   Structure-based discovery of potent WD repeat domain 5 inhibitors that demonstrate efficacy and safety in preclinical animal models
  2. Teuscher, Kevin B; Chowdhury, Somenath; Meyers, Kenneth M; Tian, Jianhua; Sai, Jiqing; Van Meveren, Mayme; South, Taylor M; Sensintaffar, John L; Rietz, Tyson A; Goswami, Soumita; Wang, Jing; Grieb, Brian C; Lorey, Shelly L; Howard, Gregory C; Liu, Qi; Moore,Bill; Stott,Gordon; Tansey, William P; Lee, Taekyu; Fesik, Stephen W
  3. Proceedings of the National Academy of Sciences of the United States of America. 2023, Jan 03; 120(1): e2211297120.
  1. 12.   Virtual screening for small-molecule pathway regulators by image-profile matching
  2. Rohban, Mohammad H; Fuller, Ashley M; Tan, Ceryl; Goldstein, Jonathan T; Syangtan, Deepsing; Gutnick, Amos; DeVine, Ann; Nijsure, Madhura P; Rigby,Megan; Sacher, Joshua R; Corsello, Steven M; Peppler, Grace B; Bogaczynska, Marta; Boghossian, Andrew; Ciotti, Gabrielle E; Hands, Allison T; Mekareeya, Aroonroj; Doan, Minh; Gale, Jennifer P; Derynck, Rik; Turbyville,Tommy; Boerckel, Joel D; Singh, Shantanu; Kiessling, Laura L; Schwarz, Thomas L; Varelas, Xaralabos; Wagner, Florence F; Kafri, Ran; Eisinger-Mathason, T S Karin; Carpenter, Anne E
  3. Cell Systems. 2022, Sep 01; 13(9): 724-736.e9.
  1. 13.   The All of Us Research Program: Data quality, utility, and diversity
  2. Ramirez, Andrea H; Sulieman, Lina; Schlueter, David J; Halvorson, Alese; Qian, Jun; Ratsimbazafy, Francis; Loperena, Roxana; Mayo, Kelsey; Basford, Melissa; Deflaux, Nicole; Muthuraman, Karthik N; Natarajan, Karthik; Kho, Abel; Xu, Hua; Wilkins, Consuelo; Anton-Culver, Hoda; Boerwinkle, Eric; Cicek, Mine; Clark, Cheryl R; Cohn, Elizabeth; Ohno-Machado, Lucila; Schully, Sheri D; Ahmedani, Brian K; Argos, Maria; Cronin, Robert M; O'Donnell, Christopher; Fouad, Mona; Goldstein, David B; Greenland, Philip; Hebbring, Scott J; Karlson, Elizabeth W; Khatri, Parinda; Korf, Bruce; Smoller, Jordan W; Sodeke, Stephen; Wilbanks, John; Hentges, Justin; Mockrin,Stephen; Lunt, Christopher; Devaney, Stephanie A; Gebo, Kelly; Denny, Joshua C; Carroll, Robert J; Glazer, David; Harris, Paul A; Hripcsak, George; Philippakis, Anthony; Roden, Dan M
  3. Patterns (New York, N.Y.). 2022, Aug 12; 3(8): 100570.
  1. 14.   Guidance for setting international standards on reporting longitudinal adherence to stool-based colorectal cancer screening
  2. van Wifferen, Francine; Greuter, Marjolein J E; Lissenberg-Witte, Birgit I; Carvalho, Beatriz; Meijer, Gerrit A; Dekker, Evelien; Campari, Cinzia; Garcia, Montse; Rabeneck, Linda; Lansdorp-Vogelaar, Iris; Senore, Carlo; Coupé, Veerle M H; Segnan, Nereo; McCarthy, Sharon; Puricelli Perin,Douglas; Portillo, Isabel; Jahn, Beate
  3. Preventive Medicine. 2022, Aug 10; 107187.
  1. 15.   Exploration of Ultralarge Compound Collections for Drug Discovery
  2. Warr, Wendy A; Nicklaus,Marc; Nicolaou, Christos A; Rarey, Matthias
  3. Journal of Chemical Information and Modeling. 2022, Apr 14;
  1. 16.   Chimeric Fusion (F) and Attachment (G) Glycoprotein Antigen Delivery by mRNA as a Candidate Nipah Vaccine
  2. Loomis, Rebecca J.; DiPiazza, Anthony T.; Falcone, Samantha; Ruckwardt, Tracy J.; Morabito, Kaitlyn M.; Abiona, Olubukola M.; Chang, Lauren A.; Caringal, Ria T.; Presnyak, Vladimir; Narayanan, Elisabeth; Tsybovsky,Yaroslav; Nair, Deepika; Hutchinson, Geoffrey B.; Stewart-Jones, Guillaume B. E.; Kueltzo, Lisa A.; Himansu, Sunny; Mascola, John R.; Carfi, Andrea; Graham, Barney S.
  3. Frontiers in Immunology. 2021, Dec 8; 12
  1. 17.   From structure to application: Progress and opportunities in peptide materials development
  2. Lopez Silva,Tania; Schneider,Joel
  3. Current Opinion in Chemical Biology. 2021, Oct; 64: 131-144.
  1. 18.   Interprotomer disulfide-stabilized variants of the human metapneumovirus fusion glycoprotein induce high titer-neutralizing responses
  2. Stewart-Jones, Guillaume B. E.; Gorman, Jason; Ou, Li; Zhang, Baoshan; Joyce, M. Gordon; Yang, Lijuan; Cheng, Cheng; Chuang, Gwo-Yu; Foulds, Kathryn E.; Kong, Wing-Pui; Olia, Adam S.; Sastry, Mallika; Shen, Chen-Hsiang; Todd, John-Paul; Tsybovsky,Yaroslav; Verardi, Raffaello; Yang, Yongping; Collins, Peter L.; Corti, Davide; Lanzavecchia, Antonio; Scorpio, Diana G.; Mascola, John R.; Buchholz, Ursula J.; Kwong, Peter D.
  3. Proceedings of the National Academy of Sciences of the United States of America. 2021, Sep 28; 118(39):
  1. 19.   Covalent Small Molecule Immunomodulators Targeting the Protease Active Site
  2. Kim,Hong-Rae; Tagirasa,Ravichandra; Yoo,Euna
  3. Journal of medicinal chemistry. 2021, May 13; 64(9): 5291-5322.
  1. 20.   MSA-Regularized Protein Sequence Transformer toward Predicting Genome-Wide Chemical-Protein Interactions: Application to GPCRome Deorphanization
  2. Cai, Tian; Lim, Hansaim; Abbu, Kyra Alyssa; Qiu, Yue; Nussinov,Ruth; Xie, Lei
  3. Journal of Chemical Information and Modeling. 2021, Apr 26; 61(4): 1570-1582.
  1. 21.   Proteogenomic and metabolomic characterization of human glioblastoma
  2. Wang, Liang-Bo; Karpova, Alla; Gritsenko, Marina A.; Kyle, Jennifer E.; Cao, Song; Li, Yize; Rykunov, Dmitry; Colaprico, Antonio; Rothstein, Joseph H.; Hong, Runyu; Stathias, Vasileios; Cornwell, MacIntosh; Petralia, Francesca; Wu, Yige; Reva, Boris; Krug, Karsten; Pugliese, Pietro; Kawaler, Emily; Olsen, Lindsey K.; Liang, Wen-Wei; Song, Xiaoyu; Dou, Yongchao; Wendl, Michael C.; Caravan, Wagma; Liu, Wenke; Zhou, Daniel Cui; Ji, Jiayi; Tsai, Chia-Feng; Petyuk, Vladislav A.; Moon, Jamie; Ma, Weiping; Chu, Rosalie K.; Weitz, Karl K.; Moore, Ronald J.; Monroe, Matthew E.; Zhao, Rui; Yang, Xiaolu; Yoo, Seungyeul; Krek, Azra; Demopoulos, Alexis; Zhu, Houxiang; Wyczalkowski, Matthew A.; McMichael, Joshua F.; Henderson, Brittany L.; Lindgren, Caleb M.; Boekweg, Hannah; Lu, Shuangjia; Baral, Jessika; Yao, Lijun; Stratton, Kelly G.; Bramer, Lisa M.; Zink, Erika; Couvillion, Sneha P.; Bloodsworth, Kent J.; Satpathy, Shankha; Sieh, Weiva; Boca, Simina M.; Schurer, Stephan; Chen, Feng; Wiznerowicz, Maciej; Ketchum, Karen A.; Boja, Emily S.; Kinsinger, Christopher R.; Robles, Ana; Hiltke, Tara; Thiagarajan,Mathangi; Nesvizhskii, Alexey; Zhang, Bing; Mani, D. R.; Ceccarelli, Michele; Chen, Xi S.; Cottingham, Sandra L.; Li, Qing Kay; Kim, Albert H.; Fenyo, David; Ruggles, Kelly; Rodriguez, Henry; Mesri, Mehdi; Payne, Samuel H.; Resnick, Adam C.; Wang, Pei; Smith, Richard D.; Iavarone, Antonio; Chheda, Milan G.; Barnholtz-Sloan, Jill S.; Rodland, Karin D.; Liu, Tao; Ding, Li
  3. Cancer Cell. 2021, Apr 12; 39(4): 509-528.e20.
  1. 22.   A study of transposable element-associated structural variations (TASVs) using a de novo-assembled Korean genome
  2. Mun, Seyoung; Kim, Songmi; Lee, Wooseok; Kang, Keunsoo; Meyer,Thomas; Han, Bok-Ghee; Han, Kyudong; Kim, Heui-Soo
  3. Experimental and Molecular Medicine. 2021, Apr; 53(4): 615-630.
  1. 23.   Predicting Volume of Distribution in Humans: Performance of in silico Methods for A Large Set of Structurally Diverse Clinical Compounds
  2. Murad, Neha; Pasikanti, Kishore K; Madej,Benjamin; Minnich, Amanda; McComas, Juliet M; Crouch, Sabrinia; Polli, Joseph W; Weber, Andrew D
  3. Drug metabolism and disposition: the biological fate of chemicals. 2021, Feb 1; 49: 169-178.
  1. 24.   Epidemiological and ES cell-based Functional Evaluation of BRCA2 Variants Identified in Families with Breast Cancer
  2. O'Sullivan,Theresa; Thirthagiri, Eswary; Chong, Chan-Eng; Stauffer,Stacey; Reid,Susan; Southon,Eileen; Hassan, Tiara; Ravichandran, Aravind; Wijaya, Eldarina; Lim, Joanna; Taib, Nur Aishah Mohd; Fadzli, Farhana; Yip, Cheng Har; Hartman, Mikael; Li, Jingmei; van Dam, Rob M; North, Susan L; Das, Ranabir; Easton, Douglas F; Biswas,Kajal; Teo, Soo-Hwang; Sharan,Shyam
  3. Human Mutation. 2021, Feb; 42(2): 200-212.
  1. 25.   A network-based deep learning methodology for stratification of tumor mutations
  2. Liu, Chuang; Han, Zhen; Zhang, Zi-Ke; Nussinov,Ruth; Cheng, Feixiong
  3. Bioinformatics. 2021, Jan 08; 37(1): 82-88.
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