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  1. 1.   An ultra-stable redox-controlled self-assembling polypeptide nanotube for targeted imaging and therapy in cancer
  2. Asampille, Gitanjali; Verma, Brijesh Kumar; Swain, Monalisa; Shettar, Abhijith; Rosenzweig, Steven A; Kondaiah, Paturu; Atreya, Hanudatta S
  3. Journal of nanobiotechnology. 2018, Dec 08; 16(1): 101.
  1. 2.   Induced fit, conformational selection and independent dynamic segments: an extended view of binding events
  2. Csermely, P.; Palotai, R.; Nussinov, R.
  3. Trends in Biochemical Sciences. 2010, Oct; 35(10): 539-546.
  1. 3.   Studies of the biological properties of human beta-defensin 1
  2. Pazgier, M.; Prahl, A.; Hoover, D. M.; Lubkowski, J.
  3. Journal of Biological Chemistry. 2007, Jan; 282(3): 1819-1829.
  1. 4.   Understanding antibody-antigen associations by molecular dynamics simulations: Detection of important intra- and inter-molecular salt bridges
  2. Sinha, N.; Li, Y. L.; Lipschultz, C. A.; Smith-Gill, S. J.
  3. Cell Biochemistry and Biophysics. 2007 47(3): 361-375.
  1. 5.   Catalytic role of proton transfers in the formation of a tetrahedral adduct in a serine carboxyl peptidase
  2. Guo, H. B.; Wlodawer, A.; Nakayama, T.; Xu, Q.; Guo, H.
  3. Biochemistry. 2006, Aug; 45(30): 9129-9137.
  1. 6.   Structural mimicry of CD4 by a cross-reactive HIV-1 neutralizing antibody with CDR-H2 and H3 containing unique motifs
  2. Prabakaran, P.; Gan, J. H.; Wu, Y. Q.; Zhang, M. Y.; Dimitrov, D. S.; Ji, X. H.
  3. Journal of Molecular Biology. 2006, MAR 17; 357(1): 82-99.
  1. 7.   Atomic-level description of amyloid beta-dimer formation
  2. Gnanakaran, S.; Nussinov, R.; Garcia, A. E.
  3. Journal of the American Chemical Society. 2006, Feb; 128(7): 2158-2159.
  1. 8.   Gateway vectors for the production of combinatorially-tagged His(6)-MBP fusion proteins in the cytoplasm and periplasm of Escherichia Coli
  2. Nallamsetty, S.; Austin, B. P.; Penrose, K. J.; Waugh, D. S.
  3. Protein Science. 2005, DEC; 14(12): 2964-2971.
  1. 9.   Combinatorial docking approach for structure prediction of large proteins and multi-molecular assemblies
  2. Inbar, Y.; Benyamini, H.; Nussinov, R.; Wolfson, H. J.
  3. Physical Biology. 2005, DEC; 2(4, Sp. Iss.): S156-S165.
  1. 10.   Isolation and characterization of novel cyclotides from Viola hederaceae - Solution structure and anti-HIV activity of vhl-1, a leaf-specific expressed cyclotide
  2. Chen, B.; Colgrave, M. L.; Daly, N. L.; Rosengren, K. J.; Gustafson, K. R.; Craik, D. J.
  3. Journal of Biological Chemistry. 2005, JUN 10; 280(23): 22395-22405.
  1. 11.   Energy landscape of amyloidogenic peptide oligomerization by parallel-tempering molecular dynamics simulation: Significant role of Asn ladder
  2. Tsai, H. H.; Reches, M.; Tsai, C. J.; Gunasekaran, K.; Gazit, E.; Nussinov, R.
  3. Proceedings of the National Academy of Sciences of the United States of America. 2005, JUN 7; 102(23): 8174-8179.
  1. 12.   Binding affinity difference induced by the stereochemistry of the sulfoxide bridge of the cyclic peptide inhibitors of Grb2-SH2 domain: NMR studies for the structural origin
  2. Shi, Y. H.; Song, Y. L.; Lin, D. H.; Tan, J. Z.; Roller, P. P.; Li, Q.; Long, Y. Q.; Song, G. Q.
  3. Biochemical and Biophysical Research Communications. 2005, MAY 20; 330(4): 1254-1261.
  1. 13.   Structure of circulin B and implications for antimicrobial activity of the cyclotides
  2. Koltay, A.; Daly, N. L.; Gustafson, K. R.; Craik, D. J.
  3. International Journal of Peptide Research and Therapeutics. 2005, MAR; 11(1): 99-106.
  1. 14.   MAPPIS: Multiple 3D alignment of protein-protein interfaces
  2. Shulman-Peleg, A.; Shatsky, M.; Nussinov, R.; Wolfson, H. J.
  3. Computational Life Sciences. 2005; 3695 : 91-103.
  1. 15.   Favorable scaffolds: proteins with different sequence, structure and function may associate in similar ways
  2. Keskin, O.; Nussinov, R.
  3. Protein Engineering Design & Selection. 2005, JAN; 18(1): 11-24.
  1. 16.   Protein-protein interactions: Hot spots and structurally conserved residues often locate in complemented pockets that pre-organized in the unbound states: Implications for docking
  2. Li, X.; Keskin, O.; Ma, B. Y.; Nussinov, R.; Liang, J.
  3. Journal of Molecular Biology. 2004, NOV 26; 344(3): 781-795.
  1. 17.   Solution structure of the pseudo-5 ' splice site of a retroviral splicing suppressor
  2. Cabello-Villegas, J.; Giles, K. E.; Soto, A. M.; Yu, P.; Mougin, A.; Beemon, K. L.; Wang, Y. X.
  3. Rna-a Publication of the Rna Society. 2004, SEP; 10(9): 1388-1398.
  1. 18.   Simultaneous topography and recognition Imaging using force microscopy
  2. Stroh, C. M.; Ebner, A.; Geretschlager, M.; Freudenthaler, G.; Kienberger, F.; Kamruzzahan, A. S. M.; Smith-Gil, S. J.; Gruber, H. J.; Hinterdorfer, P.
  3. Biophysical Journal. 2004, SEP; 87(3): 1981-1990.
  1. 19.   Multiple proton translocation in biomolecular systems: concerted to stepwise transition in a simple model
  2. Kohanoff, J. J.; Cachau, R. E.
  3. Molecular Physics. 2004, MAY 10; 102(9-10): 1007-1014.
  1. 20.   Small molecule toxins targeting tumor receptors
  2. Dyba, M.; Tarasova, N. I.; Michejda, C. J.
  3. Current Pharmaceutical Design. 2004 10(19): 2311-2334.
  1. 21.   The soluble sema domain of the RON receptor inhibits macrophage-stimulating protein-induced receptor activation
  2. Angeloni, D.; Danilkovitch-Miagkova, A.; Miagkov, A.; Leonard, E. J.; Lerman, M. I.
  3. Journal of Biological Chemistry. 2004 279(5): 3726-3732.
  1. 22.   Solution structure of the cyclotide palicourein: Implications for the development of a pharmaceutical framework
  2. Barry, D. G.; Daly, N. L.; Bokesch, H. R.; Gustafson, K. R.; Craik, D. J.
  3. Structure. 2004 12(1): 85-94.
  1. 23.   De novo design and characterization of a helical hairpin eicosapeptide: Emergence of an anion receptor in the linker region
  2. Rudresh; Ramakumar, S.; Ramagopal, U. A.; Inai, Y.; Goel, S.; Sahal, D.
  3. Structure. 2004 12(3): 389-396.
  1. 24.   Ultrahigh resolution drug design I: Details of interactions in human aldose reductase-inhibitor complex at 0.66 angstrom
  2. Howard, E. I.; Sanishvili, R.; Cachau, R. E.; Mitschler, A.; Chevrier, B.; Barth, P.; Lamour, V.; Van Zandt, M.; Sibley, E.; Bon, C.; Moras, D.; Schneider, T. R.; Joachimiak, A.; Podjarny, A.
  3. Proteins-Structure Function and Bioinformatics. 2004 55(4): 792-804.
  1. 25.   Hydrogen bonds in human ubiquitin reflected in temperature coefficients of amide protons
  2. Cierpicki, T.; Zhukov, I.; Byrd, R. A.; Otlewski, J.
  3. Journal of Magnetic Resonance. 2002 157(2): 178-180.
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