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  1. 1.   Insights into the mechanisms and structure of breakage-fusion-bridge cycles in cervical cancer using long-read sequencing
  2. Rodriguez, Isabel; Rossi, Nicole M; Keskus, Ayse G; Xie, Yi; Ahmad, Tanveer; Bryant, Asher; Lou,Hong; Paredes, Jesica Godinez; Milano, Rose; Rao, Nina; Tulsyan, Sonam; Boland, Joseph F; Luo,Wen; Liu,Jia; O'Hanlon, Tim; Bess, Jazmyn; Mukhina, Vera; Gaykalova, Daria; Yuki, Yuko; Malik, Laksh; Billingsley, Kimberley J; Blauwendraat, Cornelis; Carrington, Mary; Yeager,Meredith; Mirabello, Lisa; Kolmogorov, Mikhail; Dean, Michael
  3. American Journal of Human Genetics. 2024, Jan 25;
  1. 2.   Conformational coupling, bridge helix dynamics and active site dehydration in catalysis by RNA polymerase
  2. Seibold, S. A.; Singh, B. N.; Zhang, C. F.; Kireeva, M.; Domecq, C.; Bouchard, A.; Nazione, A. M.; Feig, M.; Cukier, R. I.; Coulombe, B.; Kashlev, M.; Hampsey, M.; Burton, Z. F.
  3. Biochimica Et Biophysica Acta-Gene Regulatory Mechanisms. 2010, Aug; 1799(8): 575-587.
  1. 3.   Mechanism of the myosin catalyzed hydrolysis of ATP as rationalized by molecular modeling
  2. Grigorenko, B. L.; Rogov, A. V.; Topol, I. A.; Burt, S. K.; Martinez, H. M.; Nemukhin, A. V.
  3. Proceedings of the National Academy of Sciences of the United States of America. 2007, Apr; 104(17): 7057-7061.
  1. 4.   Understanding antibody-antigen associations by molecular dynamics simulations: Detection of important intra- and inter-molecular salt bridges
  2. Sinha, N.; Li, Y. L.; Lipschultz, C. A.; Smith-Gill, S. J.
  3. Cell Biochemistry and Biophysics. 2007 47(3): 361-375.
  1. 5.   Crosstalk between chemokines and neuronal receptors bridges immune and nervous systems
  2. Zhang, N.; Oppenheim, J. J.
  3. Journal of Leukocyte Biology. 2005, DEC; 78(6): 1210-1214.
  1. 6.   Reconstruction of the conserved beta-bulge in mammalian defensins using D-amino acids
  2. Xie, C.; Prahl, A.; Ericksen, B.; Wu, Z. B.; Zeng, P. Y.; Li, X. Q.; Lu, W. Y.; Lubkowski, J.; Lu, W. Y.
  3. Journal of Biological Chemistry. 2005, SEP 23; 280(38): 32921-32929.
  1. 7.   Binding of pregnancy-specific glycoprotein 17 to CD9 on macrophages induces secretion of IL-10, IL-6, PGE(2) and TGF-beta(1)
  2. Ha, C. T.; Waterhouse, R.; Wessells, J.; Wu, J. A.; Dveksler, G. S.
  3. Journal of Leukocyte Biology. 2005, JUN; 77(6): 948-957.
  1. 8.   Binding affinity difference induced by the stereochemistry of the sulfoxide bridge of the cyclic peptide inhibitors of Grb2-SH2 domain: NMR studies for the structural origin
  2. Shi, Y. H.; Song, Y. L.; Lin, D. H.; Tan, J. Z.; Roller, P. P.; Li, Q.; Long, Y. Q.; Song, G. Q.
  3. Biochemical and Biophysical Research Communications. 2005, MAY 20; 330(4): 1254-1261.
  1. 9.   Crystal structure of cockroach allergen Bla g 2, an unusual zinc binding aspartic protease with a novel mode of self-inhibition
  2. Gustchina, A.; Li, M.; Wunschmann, S.; Chapman, M. D.; Pomes, A.; Wlodawer, A.
  3. Journal of Molecular Biology. 2005, APR 29; 348(2): 433-444.
  1. 10.   Expression, purification, and properties of the Ubc4/5 family of E2 enzymes
  2. Lorick, K. L.; Jensen, J. P.; Weissman, A. M.
  3. Methods in Enzymology. 2005; 398 : 54-68.
  1. 11.   Small nonphosphorylated Grb2-SH2 domain antagonists evaluated by surface resonance plasmon technology
  2. Lung, F. D. T.; Chang, C. W.; Chong, M. C.; Liou, C. C.; Li, P.; Peach, M. L.; Nicklaus, M. C.; Lou, B. S.; Roller, P. P.
  3. Peptide Science (Biopolymers). 2005 80(5): 628-635.
  1. 12.   Long-range ordering in water-halide ion interactions: A database study
  2. Prabakaran, P.; Singarayan, M. G.
  3. Chemistry Letters. 2004, DEC 5; 33(12): 1640-1641.
  1. 13.   Experiment-guided thermodynamic simulations on reversible two-state proteins: implications for protein thermostability
  2. Kumar, S.; Nussinov, R.
  3. Biophysical Chemistry. 2004, NOV 1; 111(3): 235-246.
  1. 14.   Different roles of electrostatics in heat and in cold: Adaptation by citrate synthase
  2. Kumar, S.; Nussinov, R.
  3. Chembiochem. 2004 5(3): 280-290.
  1. 15.   Structure of the scorpion toxin BmBKTtx1 solved from single wavelength anomalous scattering of sulfur
  2. Szyk, A.; Lu, W. Y.; Xu, C. Q.; Lubkowski, J.
  3. Journal of Structural Biology. 2004 145(3): 289-294.
  1. 16.   Detecting the vanishing populations of the highly endangered Darwin's fox, Pseudalopex fulvipes
  2. Vila, C.; Leonard, J. A.; Iriarte, A.; O'Brien, S. J.; Johnson, W. E.; Wayne, R. K.
  3. Animal Conservation. 2004 7(Part 2): 147-153.
  1. 17.   PROSIT: Pseudo-Rotational Online Service and Interactive Tool, applied to a conformational survey of nucleosides and nucleotides
  2. Sun, G.; Voigt, J. H.; Filippov, I. V.; Marquez, V. E.; Nicklaus, M. C.
  3. Journal of Chemical Information and Computer Sciences. 2004, SEP-OCT; 44(5): 1752-1762.
  1. 18.   Potentiating effect of distant sites in non-phosphorylated cyclic peptide antagonists of the Grb2-SH2 domain
  2. Long, Y. Q.; Guo, R. B.; Luo, J. H.; Yang, D. J.; Roller, P. P.
  3. Biochemical and Biophysical Research Communications. 2003 310(2): 334-340.
  1. 19.   Modeling the binding sites of anti-hen egg white lysozyme antibodies HyHEL-8 and HyHEL-26: An insight into the molecular basis of antibody cross-reactivity and specificity
  2. Mohan, S.; Sinha, N.; Smith-Gill, J.
  3. Biophysical Journal. 2003 85(5): 3221-3236.
  1. 20.   Dissection of binding interactions in the complex between the anti-lysozyme antibody HyHEL-63 and its antigen
  2. Li, Y. L.; Urrutia, M.; Smith-Gill, S. J.; Mariuzza, R. A.
  3. Biochemistry. 2003 42(1): 11-22.
  1. 21.   Differences in electrostatic properties at antibody-antigen binding sites: Implications for specificity and cross- reactivity
  2. Sinha, N.; Mohan, S.; Lipschultz, C. A.; Smith-Gill, S. J.
  3. Biophysical Journal. 2002 83(6): 2946-2968.
  1. 22.   Relationship between ion pair geometries and electrostatic strengths in proteins
  2. Kumar, S.; Nussinov, R.
  3. Biophysical Journal. 2002 83(3): 1595-1612.
  1. 23.   Protein structure to function via dynamics
  2. Sinha, N.; Smith-Gill, S. J.
  3. Protein and Peptide Letters. 2002 9(5): 367-377.
  1. 24.   Close-range electrostatic interactions in proteins
  2. Kumar, S.; Nussinov, R.
  3. Chembiochem. 2002 3(7): 604-617.
  1. 25.   Electrostatics in protein binding and function
  2. Sinha, N.; Smith-Gill, S. J.
  3. Current Protein & Peptide Science. 2002 3(6): 601-614.
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