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  1. 1.   Crystal structures of beta-1,4-galactosyltransferase 7 enzyme reveal conformational changes and substrate binding
  2. Tsutsui, Y.; Ramakrishnan, B.; Qasba, P. K.
  3. Journal of Biological Chemistry. 2013, 1-Nov; 288(44): 31963-70.
  1. 2.   Allosteric activation of E2-RING finger-mediated ubiquitylation by a structurally defined specific E2-binding region of gp78
  2. Das, R.; Mariano, J.; Tsai, Y. C.; Kalathur, R. C.; Kostova, Z.; Li, J.; Tarasov, S. G.; McFeeters, R. L.; Altieri, A. S.; Ji, X.; Byrd, R. A.; Weissman, A. M.
  3. Molecular Cell. 2009, Jun 26; 34(6): 674-85.
  1. 3.   Structural definition of a conserved neutralization epitope on HIV-1 gp120
  2. Zhou, T. Q.; Xu, L.; Dey, B.; Hessell, A. J.; Van Ryk, D.; Xiang, S. H.; Yang, X. Z.; Zhang, M. Y.; Zwick, M. B.; Arthos, J.; Burton, D. R.; Dimitrov, D. S.; Sodroski, J.; Wyatt, R.; Nabel, G. J.; Kwong, P. D.
  3. Nature. 2007, Feb; 445(7129): 732-737.
  1. 4.   Anatomy of Escherichia coli sigma(70) promoters
  2. Shultzaberger, R. K.; Chen, Z. H.; Lewis, Janine; Schneider, Tom
  3. Nucleic Acids Research. 2007, Feb; 35(3): 771-788.
  1. 5.   Association of putative concave protein-binding sites with the fluctuation behavior of residues
  2. Ertekin, A.; Nussinov, R.; Haliloglu, T.
  3. Protein Science. 2006, Oct; 15(10): 2265-2277.
  1. 6.   The multiple common point set problem and its application to molecule binding pattern detection
  2. Shatsky, M.; Shulman-Peleg, A.; Nussinov, R.; Wolfson, H. J.
  3. Journal of Computational Biology. 2006, Mar; 13(2): 407-428.
  1. 7.   A common pharmacophore for a diverse set of colchicine site inhibitors using a structure-based approach
  2. Nguyen, T. L.; McGrath, C.; Hermone, A. R.; Burnett, J. C.; Zaharevitz, D. W.; Day, B. W.; Wipf, P.; Hamel, E.; Gussio, R.
  3. Journal of Medicinal Chemistry. 2005, SEP 22; 48(19): 6107-6116.
  1. 8.   Calcium-dependent activation of interleukin-21 gene expression in T cells
  2. Kim, H. P.; Korn, L. L.; Gamero, A. M.; Leonard, W. J.
  3. Journal of Biological Chemistry. 2005, JUL 1; 280(26): 25291-25297.
  1. 9.   Protein-protein interactions: organization, cooperativity and mapping in a bottom-up Systems Biology approach
  2. Keskin, O.; Ma, B. Y.; Rogale, K.; Gunasekaran, K.; Nussinov, R.
  3. Physical Biology. 2005, JUN; 2(2): S24-S35.
  1. 10.   Cross-resistance of Escherichia coli RNA polymerases conferring rifarnpin resistance to different antibiotics
  2. Xu, M.; Zhou, Y. N.; Goldstein, B. P.; Jin, D. J.
  3. Journal of Bacteriology. 2005, APR; 187(8): 2783-2792.
  1. 11.   How similar are protein folding and protein binding nuclei? Examination of vibrational motions of energy hot spots and conserved residues
  2. Haliloglu, T.; Keskin, O.; Ma, B. Y.; Nussinov, R.
  3. Biophysical Journal. 2005, MAR; 88(3): 1552-1559.
  1. 12.   Transcriptional regulator CTCF controls human interleukin 1 receptor-associated kinase 2 promoter
  2. Kuzmin, I.; Geil, L.; Gibson, L.; Cavinato, T.; Loukinov, D.; Lobanenkov, V.; Lerman, M. I.
  3. Journal of Molecular Biology. 2005, FEB 18; 346(2): 411-422.
  1. 13.   Design and synthesis of conformationally constrained Grb2 SH2 domain binding peptides employing alpha-methylphenylalanyl based phosphotyrosyl mimetics
  2. Oishi, S.; Karki, R. G.; Kang, S. U.; Wang, X. Z.; Worthy, K. M.; Bindu, L. K.; Nicklaus, M. C.; Fisher, R. J.; Burke, T. R.
  3. Journal of Medicinal Chemistry. 2005, FEB 10; 48(3): 764-772.
  1. 14.   Mutations in the RNase H primer grip domain of murine leukemia virus reverse transcriptase decrease efficiency and accuracy of plus-strand DNA transfer
  2. Mbisa, J. L.; Nikolenko, G. N.; Pathak, V. K.
  3. Journal of Virology. 2005, JAN; 79(1): 419-427.
  1. 15.   Recognition of binding patterns common to a set of protein structures
  2. Shatsky, M.; Shulman-Peleg, A.; Nussinov, R.; Wolfson, H. J.
  3. Research in Computational Molecular Biology, Proceedings. 2005 3500: 440-455.
  1. 16.   Interleukin-10 induces uteroglobin-related protein (UGRP) 1 gene expression in lung epithelial cells through homeodomain transcription factor T/EBP/NKX2.1
  2. Srisodsai, A.; Kurotani, R.; Chiba, Y.; Sheikh, F.; Young, H. A.; Donnelly, R. P.; Kimura, S.
  3. Journal of Biological Chemistry. 2004, DEC 24; 279(52): 54358-54368.
  1. 17.   Is allostery an intrinsic property of all dynamic proteins?
  2. Gunasekaran, K.; Ma, B. Y.; Nussinov, R.
  3. Proteins-Structure Function and Bioinformatics. 2004, NOV 15; 57(3): 433-443.
  1. 18.   Mammary gland remodeling depends on gp130 signaling through Stat3 and MAPK
  2. Zhao, L.; Hart, S.; Cheng, J. G.; Melenhorst, J. J.; Bierie, B.; Ernst, M.; Stewart, C.; Schaper, F.; Heinrich, P. C.; Ullrich, A.; Robinson, G. W.; Hennighausen, L.
  3. Journal of Biological Chemistry. 2004, OCT 15; 279(42): 44093-44100.
  1. 19.   Simultaneous topography and recognition Imaging using force microscopy
  2. Stroh, C. M.; Ebner, A.; Geretschlager, M.; Freudenthaler, G.; Kienberger, F.; Kamruzzahan, A. S. M.; Smith-Gil, S. J.; Gruber, H. J.; Hinterdorfer, P.
  3. Biophysical Journal. 2004, SEP; 87(3): 1981-1990.
  1. 20.   Binding, internalization, and membrane incorporation of human immunodeficiency virus-1 at the blood-brain barrier is differentially regulated
  2. Banks, W. A.; Robinson, S. M.; Wolf, K. M.; Bess, J. W.; Arthur, L. O.
  3. Neuroscience. 2004 128(1): 143-153.
  1. 21.   Protein-protein interfaces: Recognition of similar spatial and chemical organizations
  2. Shulman-Peleg, A.; Mintz, S.; Nussinov, R.; Wolfson, H. J.
  3. Algorithms in Bioinformatics, Proceedings. 2004 3240: 194-205.
  1. 22.   Recognition of functional sites in protein structures
  2. Shulman-Peleg, A.; Nussinov, R.; Wolfson, H. J.
  3. Journal of Molecular Biology. 2004 339(3): 607-633.
  1. 23.   A method for simultaneous alignment of multiple protein structures
  2. Shatsky, M.; Nussinov, R.; Wolfson, H. J.
  3. Proteins-Structure Function and Bioinformatics. 2004 56(1): 143-156.
  1. 24.   Protein-protein interactions: Coupling of structurally conserved residues and of hot spots across interfaces. implications for docking
  2. Halperin, I.; Wolfson, H.; Nussinov, R.
  3. Structure. 2004 12(6): 1027-1038.
  1. 25.   Studies on the metal binding sites in the catalytic domain of beta 1,4-galactosyltransferase
  2. Boeggeman, E.; Qasba, P. K.
  3. Glycobiology. 2002 12(7): 395-407.
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