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  1. 1.   ERK Allosteric Activation: The Importance of Two Ordered Phosphorylation Events
  2. Regev,Clil; Jang,Hyunbum; Nussinov,Ruth
  3. Journal of Molecular Biology. 2025, Apr 09; 169130.
  1. 2.   Discovery of potent and selective PROTACs for the protein kinase LZK for the treatment of head and neck cancer
  2. Katerji,Meghri; Bergman, Knickole L; Lindberg, Eric; Rubin,Maxine; Funk, Amy L; Woodroofe, Carolyn C; Nyswaner, Katherine; Karpinska, Kamila; Serwa, Remigiusz; Marusiak, Anna; Swenson, Rolf E; Brognard,John
  3. The Journal of Biological Chemistry. 2025, Mar 27; 108452.
  1. 3.   A Practical Approach to Bicyclic Carbamoyl Pyridones with Application to the Synthesis of HIV-1 Integrase Strand Transfer Inhibitors
  2. Mahajan,Pankaj; Smith,Steven; Hughes,Stephen; Zhao,Xue Zhi; Burke,Terrence
  3. Molecules (Basel, Switzerland). 2023, Feb 02; 28(3):
  1. 4.   The dimeric form of bacterial L-asparaginase YpAI is fully active
  2. Strzelczyk,Pawel; Zhang,Di; Alexandratos,Jerry; Piszczek, Grzegorz; Wlodawer,Alexander; Lubkowski,Jacek
  3. The FEBS Journal. 2022, Sep 24;
  1. 5.   Solution structure and dynamics of the mitochondrial-targeted GTPase-activating protein (GAP) VopE by an integrated NMR/SAXS approach
  2. Smith, Kyle P; Lee, Woonghee; Tonelli, Marco; Lee, Yeongjoon; Light, Samuel H; Cornilescu,Gabriel; Chakravarthy, Srinivas
  3. Protein Science : a Publication of the Protein Society. 2022, Feb 08; 31(5):
  1. 6.   Structural basis of substrate specificity in human cytidine deaminase family APOBEC3s
  2. Hou, Shurong; Lee, Jeong Min; Myint,Wazo; Matsuo,Hiroshi; Yilmaz, Nese Kurt; Schiffer, Celia A.
  3. Journal of Biological Chemistry. 2021, Aug; 297(2):
  1. 7.   Structural and biochemical properties of L-asparaginase
  2. Lubkowski,Jacek; Wlodawer,Alexander
  3. The FEBS journal. 2021, Jun 19;
  1. 8.   Normal Mode Analysis of KRas4B Reveals Partner Specific Dynamics
  2. Eren, Meryem; Tuncbag, Nurcan; Jang,Hyunbum; Nussinov,Ruth; Gursoy, Attila; Keskin, Ozlem
  3. The journal of physical chemistry. B. 2021, May 27; 125(20): 5210-5221.
  1. 9.   Interactions of APOBEC3s with DNA and RNA
  2. Maiti, Atanu; Hou, Shurong; Schiffer, Celia A.; Matsuo,Hiroshi
  3. Current opinion in structural biology. 2021, Apr; 67: 195-204.
  1. 10.   Structural analyses of the PKA RII beta holoenzyme containing the oncogenic DnaJB1-PKAc fusion protein reveal protomer asymmetry and fusion-induced allosteric perturbations in fibrolamellar hepatocellular carcinoma
  2. Lu, Tsan-Wen; Aoto, Phillip C.; Weng, Jui-Hung; Nielsen, Cole; Cash, Jennifer N.; Hall, James; Zhang,Ping; Simon, Sanford M.; Cianfrocco, Michael A.; Taylor, Susan S.
  3. PLOS BIOLOGY. 2020, Dec; 18(12):
  1. 11.   Structural Features that Distinguish Inactive and Active PI3K Lipid Kinases
  2. Zhang,Mingzhen; Jang,Hyunbum; Nussinov,Ruth
  3. Journal of molecular biology. 2020, NOV 6; 432(22): 5849-5859.
  1. 12.   Structural Analysis of the Active Site and DNA Binding of Human Cytidine Deaminase APOBEC3B
  2. Hou, Shurong; Silvas, Tania V.; Leidner, Florian; Nalivaika, Ellen A.; Matsuo,Hiroshi; Yilmaz, Nese Kurt; Schiffer, Celia A.
  3. JOURNAL OF CHEMICAL THEORY AND COMPUTATION. 2019, Jan 8; 15(1): 637-647.
  1. 13.   A dynamic hydrophobic core orchestrates allostery in protein kinases
  2. Kim, Jonggul; Ahuja, Lalima G.; Chao, Frank; Xia, Youlin; McClendon, Christopher L.; Kornev, Alexandr P.; Taylor, Susan S.; Veglia, Gianluigi
  3. SCIENCE ADVANCES. 2017, APR; 3(4):
  1. 14.   Structure of a eukaryotic RNase III postcleavage complex reveals a double-ruler mechanism for substrate selection
  2. Liang, Y. H.; Lavoie, M.; Comeau, M. A.; Abou Elela, S.; Ji, X.
  3. Molecular Cell. 2014, 8-May; 54(3): 431-44.
  1. 15.   Structure of the yeast U2/U6 snRNA complex
  2. Burke, J. E.; Sashital, D. G.; Zuo, X. B.; Wang, Y. X.; Butcher, S. E.
  3. Rna-a Publication of the Rna Society. 2012, Apr; 18(4): 673-683.
  1. 16.   Molecular Dynamics Approaches Estimate the Binding Energy of HIV-1 Integrase Inhibitors and Correlate with In Vitro Activity
  2. Johnson, B. C.; Metifiot, M.; Pommier, Y.; Hughes, S. H.
  3. Antimicrobial Agents and Chemotherapy. 2012, Jan; 56(1): 411-419.
  1. 17.   Structural Insights into the Activation and Inhibition of Histo-Aspartic Protease from Plasmodium falciparum
  2. Bhaumik, P.; Xiao, H. G.; Hidaka, K.; Gustchina, A.; Kiso, Y.; Yada, R. Y.; Wlodawer, A.
  3. Biochemistry. 2011, Oct; 50(41): 8862-8879.
  1. 18.   Structure of human dual-specificity phosphatase 27 at 2.38 angstrom resolution
  2. Lountos, G. T.; Tropea, J. E.; Waugh, D. S.
  3. Acta Crystallographica Section D-Biological Crystallography. 2011, May; 67: 471-479.
  1. 19.   Clarification of the Mechanism of Acylation Reaction and Origin of Substrate Specificity of the Serine-Carboxyl Peptidase Sedolisin through QM/MM Free Energy Simulations
  2. Xu, Q.; Yao, J. Z.; Wlodawer, A.; Guo, H.
  3. Journal of Physical Chemistry B. 2011, Mar; 115(10): 2470-2476.
  1. 20.   Biological evaluation of imidazolium- and ammonium-based salts as HIV-1 integrase inhibitors
  2. Maddali, K.; Kumar, V.; March, C.; Pommier, Y.; Malhotra, S. V.
  3. Medchemcomm. 2011, Feb; 2(2): 143-150.
  1. 21.   Allosteric Regulation of Glycogen Synthase Kinase 3 beta: A Theoretical Study
  2. Buch, I.; Fishelovitch, D.; London, N.; Raveh, B.; Wolfson, H. J.; Nussinov, R.
  3. Biochemistry. 2010, Dec; 49(51): 10890-10901.
  1. 22.   Structure of the N-terminal fragment of Escherichia coli Lon protease
  2. Li, M.; Gustchina, A.; Rasulova, F. S.; Melnikov, E. E.; Maurizi, M. R.; Rotanova, T. V.; Dauter, Z.; Wlodawer, A.
  3. Acta Crystallographica Section D-Biological Crystallography. 2010, Aug; 66: 865-873.
  1. 23.   HIV-1 Integrase and Virus and Cell DNAs: Complex Formation and Perturbation by Inhibitors of Integration
  2. Hobaika, Z.; Zargarian, L.; Maroun, R. G.; Mauffret, O.; Burke, T. R.; Ferm, jian
  3. Neurochemical Research. 2010, Jun; 35(6): 888-893.
  1. 24.   Galectin-1 as a fusion partner for the production of soluble and folded human beta-1,4-galactosyltransferase-T7 in E. coil
  2. Pasek, M.; Boeggeman, E.; Ramakrishnan, B.; Qasba, P. K.
  3. Biochemical and Biophysical Research Communications. 2010, Apr; 394(3): 679-684.
  1. 25.   APOBEC3G expression is dysregulated in primary HIV-1 infection and polymorphic variants influence CD4+ T-cell counts and plasma viral load
  2. Reddy, K.; Winkler, C. A.; Werner, L.; Mlisana, K.; Karim, S. S. A.; Ndung'u, T.; Team, C. A. I. S.
  3. Aids. 2010, Jan; 24(2): 195-204.
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