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  1. 1.   The KRAS and other prenylated polybasic domain membrane anchors recognize phosphatidylserine acyl chain structure
  2. Zhou, Yong; Prakash, Priyanka S.; Liang, Hong; Gorfe, Alemayehu A.; Hancock, John F.
  3. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2021, Feb 9; 118(6):
  1. 2.   Cryo-EM Reveals Unanchored M1-Ubiquitin Chain Binding at hRpn11 of the 26S Proteasome
  2. Chen,Xiang; Dorris, Zachary; Shi,Dan; Huang, Rick K; Khant,Htet; Fox,Tara; De Val Alda,Natalia; Williams, Dewight; Zhang,Ping; Walters,Kylie
  3. Structure (London, England : 1993). 2020, NOV 3; 28(11): 1206-+.
  1. 3.   Cooperative Domain Formation by Homologous Motifs in HOIL-1L and SHARPIN Plays A Crucial Role in LUBAC Stabilization
  2. Fujita, Hiroaki; Tokunaga, Akira; Shimizu, Satoshi; Whiting, Amanda L; Aguilar Alonso, Francisco; Takagi, Kenji; Walinda, Erik; Sasaki, Yoshiteru; Shimokawa, Taketo; Mizushima, Tsunehiro; Ohki, Izuru; Ariyoshi, Mariko; Tochio, Hidehito; Bernal, Federico; Shirakawa, Masahiro; Iwai, Kazuhiro
  3. Cell Reports. 2018, Apr 24; 23(4): 1192-1204.
  1. 4.   Role of Backbone Chemistry and Monomer Sequence in Amphiphilic Oligopeptide- and Oligopeptoid-Functionalized PDMS- and PEO-Based Block Copolymers for Marine Antifouling and Fouling Release Coatings
  2. Patterson, Anastasia L.; Wenning, Brandon; Rizis, Georgios; Calabrese, Dave; Finlay, John A.; Franco, Sofia C.; Zuckermann, Ronald N.; Clare, Anthony S.; Kramer, Edward J.; Ober, Christopher K.; Segalman, Rachel A.
  3. MACROMOLECULES. 2017, Apr 11; 50(7): 2656-2667.
  1. 5.   Two ZnF-UBP Domains in Isopeptidase T (USP5)
  2. Avvakumov, G. V.; Walker, J. R.; Xue, S.; Allali-Hassani, A.; Asinas, A.; Nair, U. B.; Fang, X. Y.; Zuo, X. B.; Wane, Y. X.; Wilkinson, K. D.; Dhe-Paganon, S.
  3. Biochemistry. 2012, Feb; 51(6): 1188-1198.
  1. 6.   Application of a water-soluble pyridyl disulfide amine linker for use in Cu-free click bioconjugation
  2. Thomas, J. D.; Burke, T. R.
  3. Tetrahedron Letters. 2011, Aug; 52(33): 4316-4319.
  1. 7.   A Simulation Strategy for the Atomistic Modeling of Flexible Molecules Covalently Tethered to Rigid Surfaces: Application to Peptides
  2. Curco, D.; Zanuy, D.; Nussinov, R.; Aleman, C.
  3. Journal of Computational Chemistry. 2011, Mar; 32(4): 607-619.
  1. 8.   Myristate Exposure in the Human Immunodeficiency Virus Type 1 Matrix Protein Is Modulated by pH
  2. Fledderman, E. L.; Fujii, K.; Ghanam, R. H.; Waki, K.; Prevelige, P. E.; Freed, E. O.; Saad, J. S.
  3. Biochemistry. 2010, Nov; 49(44): 9551-9562.
  1. 9.   Cross-Reactive Human IgM-Derived Monoclonal Antibodies that Bind to HIV-1 Envelope Glycoproteins
  2. Chen, W. Z.; Zhu, Z. Y.; Liao, H. X.; Quinnan, G. V.; Broder, C. C.; Haynes, B. F.; Dimitrov, D. S.
  3. Viruses-Basel. 2010, Feb; 2(2): 547-565.
  1. 10.   Assembly and intracellular trafficking of HLA-B*3501 and HLA-B*3503
  2. Thammavongsa, V.; Schaefer, M.; Filzen, T.; Collins, K. L.; Carrington, M.; Bangia, N.; Raghavan, M.
  3. Immunogenetics. 2009, Dec; 61(11-12): 703-716.
  1. 11.   Correlation between recombinase activating gene 1 ubiquitin ligase activity and V(D)J recombination
  2. Simkus, C.; Bhattacharyya, A.; Zhou, M.; Veenstra, T. D.; Jones, J. M.
  3. Immunology. 2009 128(2): 206-217.
  1. 12.   Regulation of Androgen Receptor Transcriptional Activity and Specificity by RNF6-induced Ubiquitination
  2. Xu, K. X.; Shimelis, H.; Linn, D. E.; Jiang, R. C.; Yang, X.; Sun, F.; Guo, Z. Y.; Chen, H. G.; Li, W.; Chen, H. G.; Kong, X. T.; Melamed, J.; Fang, S. Y.; Xiao, Z.; Veenstra, T. D.; Qiu, Y.
  3. Cancer Cell. 2009 15(4): 270-282.
  1. 13.   FireDock: a web server for fast interaction refinement in molecular docking
  2. Mashiach, E.; Schneidman-Duhovny, D.; Andrusier, N.; Nussinov, R.; Wolfson, H. J.
  3. Nucleic Acids Research. 2008 36: W229-W232.
  1. 14.   Understanding antibody-antigen associations by molecular dynamics simulations: Detection of important intra- and inter-molecular salt bridges
  2. Sinha, N.; Li, Y. L.; Lipschultz, C. A.; Smith-Gill, S. J.
  3. Cell Biochemistry and Biophysics. 2007 47(3): 361-375.
  1. 15.   Multifunctional roles of the conserved arg residues in the second region of homology of p97/valosin-containing protein
  2. Wang, Q.; Song, C. C.; Irizarry, L.; Dai, R. M.; Zhang, X. D.; Li, C. C. H.
  3. Journal of Biological Chemistry. 2005, DEC 9; 280(49): 40515-40523.
  1. 16.   Substrate specificity of the human protein phosphatase 2C delta Wip1
  2. Yamaguchi, H.; Minopoli, G.; Demidov, O. N.; Chatterjee, D. K.; Anderson, C. W.; Durell, S. R.; Appella, E.
  3. Biochemistry. 2005, APR 12; 44(14): 5285-5294.
  1. 17.   In the quest for stable rescuing mutants of p53: Computational mutagenesis of flexible loop L1
  2. Pan, Y. P.; Ma, B. Y.; Venkataraghavan, R. B.; Levine, A. J.; Nussinov, R.
  3. Biochemistry. 2005, FEB 8; 44(5): 1423-1432.
  1. 18.   A comparative study of amyloid fibril formation by residues 15-19 of the human calcitonin hormone: A single beta-sheet model with a small hydrophobic core
  2. Haspel, N.; Zanuy, D.; Ma, B. Y.; Wolfson, H.; Nussinov, R.
  3. Journal of Molecular Biology. 2005, FEB 4; 345(5): 1213-1227.
  1. 19.   Ions from the Hofmeister series and osmolytes: effects on proteins in solution and in the crystallization process
  2. Collins, K. D.
  3. Methods. 2004, NOV; 34(3): 300-311.
  1. 20.   The catalytic domain of Escherichia coli Lon protease has a unique fold and a Ser-Lys dyad in the active site
  2. Botos, I.; Melnikov, E. E.; Cherry, S.; Tropea, J. E.; Khalatova, A. G.; Rasulova, F.; Dauter, Z.; Maurizi, M. R.; Rotanova, T. V.; Wlodawer, A.; Gustchina, A.
  3. Journal of Biological Chemistry. 2004 279(9): 8140-8148.
  1. 21.   Modeling of serine protease prototype reactions with the flexible effective fragment potential quantum mechanical/molecular mechanical method
  2. Nemukhin, A. V.; Grigorenko, B. L.; Rogov, A. V.; Topol, I. A.; Burt, S. K.
  3. Theoretical Chemistry Accounts. 2004 111(1): 36-48.
  1. 22.   Peptide sequence and amyloid formation: Molecular simulations and experimental study of a human islet amyloid polypeptide fragment and its analogs
  2. Zanuy, D.; Porat, Y.; Gazit, E.; Nussinov, R.
  3. Structure. 2004 12(3): 439-455.
  1. 23.   A conserved catalytic residue in the ubiquitin-conjugating enzyme family
  2. Wu, P. Y.; Hanlon, M.; Eddins, M.; Tsui, C.; Rogers, R. S.; Jensen, J. P.; Matunis, M. J.; Weissman, A. M.; Wolberger, C. P.; Pickart, C. M.
  3. Embo Journal. 2003 22(19): 5241-5250.
  1. 24.   Engineering disulfide bridges to dissect antimicrobial and chemotactic activities of human beta-defensin 3
  2. Wu, Z. B.; Hoover, D. M.; Yang, D.; Boulegue, C.; Santamaria, F.; Oppenheim, J. J.; Lubkowski, J.; Lu, W. Y.
  3. Proceedings of the National Academy of Sciences of the United States of America. 2003 100(15): 8880-8885.
  1. 25.   Synthetic diacylglycerols (DAG) and DAG-lactones as activators of protein kinase C (PK-C)
  2. Marquez, V. E.; Blumberg, P. M.
  3. Accounts of Chemical Research. 2003 36(6): 434-443.
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