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  1. 1.   Mucosal correlates of protection after influenza viral challenge of vaccinated and unvaccinated healthy volunteers
  2. Bean, Rachel; Giurgea, Luca T; Han, Alison; Czajkowski, Lindsay; Cervantes-Medina, Adriana; Gouzoulis, Monica; Mateja,Allyson; Hunsberger, Sally; Reed, Susan; Athota, Rani; Baus, Holly Ann; Kash, John C; Park, Jaekeun; Taubenberger, Jeffery K; Memoli, Matthew J
  3. mBio. 2024, Jan 09; e0237223.
  1. 2.   Vaccine elicitation and structural basis for antibody protection against alphaviruses
  2. Sutton, Matthew S; Pletnev, Sergei; Callahan, Victoria; Ko, Sungyoul; Tsybovsky,Yaroslav; Bylund, Tatsiana; Casner, Ryan G; Cerutti, Gabriele; Gardner, Christina L; Guirguis, Veronica; Verardi, Raffaello; Zhang, Baoshan; Ambrozak, David; Beddall, Margaret; Lei, Hong; Yang, Eun Sung; Liu, Tracy; Henry, Amy R; Rawi, Reda; Schön, Arne; Schramm, Chaim A; Shen, Chen-Hsiang; Shi, Wei; Stephens,Tyler; Yang, Yongping; Florez, Maria Burgos; Ledgerwood, Julie E; Burke, Crystal W; Shapiro, Lawrence; Fox, Julie M; Kwong, Peter D; Roederer, Mario
  3. Cell. 2023, Jun 08; 186(12): 2672-2689.e25.
  1. 3.   Safety and Efficacy of CR6261 in an Influenza A H1N1 Healthy Human Challenge Model
  2. Han, Alison; Czajkowski, Lindsay; Rosas, Luz Angela; Cervantes-Medina, Adriana; Xiao, Yongli; Gouzoulis, Monica; Lumbard,Keith; Hunsberger, Sally; Reed, Susan; Athota, Rani; Baus, Holly Ann; Lwin, Amy; Sadoff, Jerald; Taubenberger, Jeffery K; Memoli, Matthew J
  3. Clinical infectious diseases : an official publication of the Infectious Diseases Society of America. 2021, Dec 6; 73(11): E4260-E4268.
  1. 4.   Federated learning for predicting clinical outcomes in patients with COVID-19
  2. Dayan, Ittai; Roth, Holger R.; Zhong, Aoxiao; Harouni, Ahmed; Gentili, Amilcare; Abidin, Anas Z.; Liu, Andrew; Costa, Anthony Beardsworth; Wood, Bradford J.; Tsai, Chien-Sung; Wang, Chih-Hung; Hsu, Chun-Nan; Lee, C. K.; Ruan, Peiying; Xu, Daguang; Wu, Dufan; Huang, Eddie; Kitamura, Felipe Campos; Lacey, Griffin; de Antonio Corradi, Gustavo Cesar; Nino, Gustavo; Shin, Hao-Hsin; Obinata, Hirofumi; Ren, Hui; Crane, Jason C.; Tetreault, Jesse; Guan, Jiahui; Garrett, John W.; Kaggie, Joshua D.; Park, Jung Gil; Dreyer, Keith; Juluru, Krishna; Kersten, Kristopher; Rockenbach, Marcio Aloisio Bezerra Cavalcanti; Linguraru, Marius George; Haider, Masoom A.; AbdelMaseeh, Meena; Rieke, Nicola; Damasceno, Pablo F.; Silva, Pedro Mario Cruz E.; Wang, Pochuan; Xu, Sheng; Kawano, Shuichi; Sriswasdi, Sira; Park, Soo Young; Grist, Thomas M.; Buch, Varun; Jantarabenjakul, Watsamon; Wang, Weichung; Tak, Won Young; Li, Xiang; Lin, Xihong; Kwon, Young Joon; Quraini, Abood; Feng, Andrew; Priest, Andrew N.; Turkbey, Baris; Glicksberg, Benjamin; Bizzo, Bernardo; Kim, Byung Seok; Tor-Diez, Carlos; Lee, Chia-Cheng; Hsu, Chia-Jung; Lin, Chin; Lai, Chiu-Ling; Hess, Christopher P.; Compas, Colin; Bhatia, Deepeksha; Oermann, Eric K.; Leibovitz, Evan; Sasaki, Hisashi; Mori, Hitoshi; Yang, Isaac; Sohn, Jae Ho; Murthy, Krishna Nand Keshava; Fu, Li-Chen; Furtado de Mendonca, Matheus Ribeiro; Fralick, Mike; Kang, Min Kyu; Adil, Mohammad; Gangai, Natalie; Vateekul, Peerapon; Elnajjar, Pierre; Hickman, Sarah; Majumdar, Sharmila; McLeod, Shelley L.; Reed, Sheridan; Graf, Stefan; Harmon,Stephanie; Kodama, Tatsuya; Puthanakit, Thanyawee; Mazzulli, Tony; de Lavor, Vitor Lima; Rakvongthai, Yothin; Lee, Yu Rim; Wen, Yuhong; Gilbert, Fiona J.; Flores, Mona G.; Li, Quanzheng
  3. Nature medicine. 2021, Oct; 27(10): 1735-1743.
  1. 5.   PAIP 2019: Liver cancer segmentation challenge
  2. Kim, Yoo Jung; Jang, Hyungjoon; Lee, Kyoungbun; Park, Seongkeun; Min, Sung-Gyu; Hong, Choyeon; Park, Jeong Hwan; Lee, Kanggeun; Kim, Jisoo; Hong, Wonjae; Jung,Hyun; Liu,Yanling; Rajkumar, Haran; Khened, Mahendra; Krishnamurthi, Ganapathy; Yang, Sen; Wang, Xiyue; Han, Chang Hee; Kwak, Jin Tae; Ma, Jianqiang; Tang, Zhe; Marami, Bahram; Zeineh, Jack; Zhao, Zixu; Heng, Pheng-Ann; Schmitz, Rüdiger; Madesta, Frederic; Rösch, Thomas; Werner, Rene; Tian, Jie; Puybareau, Elodie; Bovio, Matteo; Zhang, Xiufeng; Zhu, Yifeng; Chun, Se Young; Jeong, Won-Ki; Park, Peom; Choi, Jinwook
  3. Medical Image Analysis. 2021, Jan; 67: 101854.
  1. 6.   Adjuvanted HIV-1 vaccine promotes antibody-dependent phagocytic responses and protects against heterologous SHIV challenge
  2. Om, Kier; Paquin-Proulx, Dominic; Montero, Maria; Peachman, Kristina; Shen, Xiaoying; Wieczorek, Lindsay; Beck, Zoltan; Weiner, Joshua A.; Kim, Dohoon; Li, Yifan; Mdluli, Thembi; Shubin, Zhanna; Bryant, Christopher; Sharma, Vishakha; Tokarev, Andrey; Dawson, Peter; White, Yohann; Appelbe, Oliver; Klatt, Nichole R.; Tovanabutra, Sodsai; Estes, Jacob D.; Matyas, Gary R.; Ferrari, Guido; Alving, Carl R.; Tomaras, Georgia D.; Ackerman, Margaret E.; Michael, Nelson L.; Robb, Merlin L.; Polonis, Victoria; Rolland, Morgane; Eller, Michael A.; Rao, Mangala; Bolton, Diane L.
  3. PLOS PATHOGENS. 2020, SEP; 16(9): pii: e1008764.
  1. 7.   A reanalysis of nanoparticle tumor delivery using classical pharmacokinetic metrics
  2. Price, Lauren S. L.; Stern,Steve; Deal, Allison M.; Kabanov, Alexander; Zamboni, William C.
  3. SCIENCE ADVANCES. 2020, JUL; 6(29): eaay9249.
  1. 8.   Co-immunization of DNA and Protein in the Same Anatomical Sites Induces Superior Protective Immune Responses against SHIV Challenge
  2. Felber,Barbara; Lu, Zhongyan; Hu, Xintao; Valentin,Antonio; Rosati,Margherita; Remmel, Christopher A L; Weiner, Joshua A; Carpenter, Margaret C; Faircloth, Katelyn; Stanfield-Oakley, Sherry; Williams, Wilton B; Shen, Xiaoying; Tomaras, Georgia D; LaBranche, Celia C; Montefiori, David; Trinh, Hung V; Rao, Mangala; Alam, Munir S; Vandergrift, Nathan A; Saunders, Kevin O; Wang, Yunfei; Rountree, Wes; Das, Jishnu; Alter, Galit; Reed, Steven G; Aye, Pyone P; Schiro, Faith; Pahar, Bapi; Dufour, Jason P; Veazey, Ronald S; Marx, Preston A; Venzon, David J; Shaw, George M; Ferrari, Guido; Ackerman, Margaret E; Haynes, Barton F; Pavlakis,George
  3. Cell reports. 2020, May 12; 31(6): 107624.
  1. 9.   Immunotherapy with DNA vaccine and live attenuated rubella/SIV gag vectors plus early ART can prevent SIVmac251 viral rebound in acutely infected rhesus macaques
  2. Virnik, Konstantin; Rosati,Margherita; Medvedev, Alexei; Scanlan, Aaron; Walsh, Gabrielle; Dayton, Frances; Broderick, Kate E; Lewis, Mark; Bryson, Yvonne; Lifson,Jeffrey; Ruprecht, Ruth M; Felber,Barbara; Berkower, Ira
  3. PloS one. 2020, MAR 4; 15(3): e0228163.
  1. 10.   Patient Advocacy Approaches to Improving Care for Breast and Cervical Cancer in East and Southern Africa
  2. Kizub, Darya A.; Zujewski, JoAnne; Gralow, Julie R.; Ndoh, Kingsley; Soko, Udie; Dvaladze, Allison L.
  3. JOURNAL OF GLOBAL ONCOLOGY. 2020, Feb; 6: 49-55.
  1. 11.   Auto-segmentation for Thoracic Radiation Treatment Planning: A Grand Challenge at AAPM 2017
  2. Yang, Jinzhong; Veeraraghavan, Harini; Armato, Samuel G; Farahani, Keyvan; Kirby, Justin; Kalpathy-Kramer, Jayashree; van Elmpt, Wouter; Dekker, Andre; Han, Xiao; Feng, Xue; Aljabar, Paul; Oliveira, Bruno; van der Heyden, Brent; Zamdborg, Leonid; Lam, Dao; Gooding, Mark; Sharp, Gregory C
  3. Medical Physics. 2018, Oct; 45(10): 4568-4581.
  1. 12.   PROSTATEx Challenges for computerized classification of prostate lesions from multiparametric magnetic resonance images
  2. Armato, Samuel G; Huisman, Henkjan; Drukker, Karen; Hadjiiski, Lubomir; Kirby, Justin; Petrick, Nicholas; Redmond, George; Giger, Maryellen L; Cha, Kenny; Mamonov, Artem; Kalpathy-Cramer, Jayashree; Farahani, Keyvan
  3. Journal of medical imaging (Bellingham, Wash.). 2018, Oct; 5(4): 044501.
  1. 13.   Using the Influenza Patient-reported Outcome (FLU-PRO) diary to evaluate symptoms of influenza viral infection in a healthy human challenge model
  2. Han, Alison; Poon, Jiat-Ling; Powers, John; Leidy, Nancy K; Yu, Ren; Memoli, Matthew J
  3. BMC Infectious Diseases. 2018, Jul 28; 18(1): 353.
  1. 14.   Exposure-Response of Veliparib to Inform Phase II Trial Design in Refractory or Relapsed Patients with Hematological Malignancies
  2. Mehrotra, Shailly; Gopalakrishnan, Mathangi; Gobburu, Jogarao; Ji, Jay; Greer, Jacqueline M.; Piekarz, Richard; Karp, Judith E.; Pratz, Keith W.; Rudek, Michelle A.
  3. CLINICAL CANCER RESEARCH. 2017, NOV 1; 23(21): 6421-6429.
  1. 15.   Rapid development of a DNA vaccine for Zika virus
  2. Dowd, K. A.; Ko, S. Y.; Morabito, K. M.; Yang, E. S.; Pelc, R. S.; DeMaso, C. R.; Castilho, L. R.; Abbink, P.; Boyd, M.; Nityanandam, R.; Gordon, D. N.; Gallagher, J. R.; Chen, X.; Todd, J. P.; Tsybovsky, Y.; Harris, A.; Huang, Y. S.; Higgs, S.; Vanlandingham, D. L.; Andersen, H.; Lewis, M. G.; De La Barrera, R.; Eckels, K. H.; Jarman, R. G.; Nason, M. C.; Barouch, D. H.; Roederer, M.; Kong, W. P.; Mascola, J. R.; Pierson, T. C.; Graham, B. S.
  3. Science. 2016, 14-Oct; 354(6309): 237-240.
  1. 16.   LUNGx Challenge for computerized lung nodule classification.
  2. Armato, Samuel G; Drukker, Karen; Li, Feng; Hadjiiski, Lubomir; Tourassi, Georgia D; Engelmann, Roger M; Giger, Maryellen L; Redmond, George; Farahani, Keyvan; Kirby, Justin S; Clarke, Laurence P
  3. Journal of medical imaging (Bellingham, Wash.). 2016, Oct; 3(4): 044506.
  1. 17.   SIVmac239 MVA vaccine with and without a DNA prime, similar prevention of infection by a repeated dose SIVsmE660 challenge despite different immune responses
  2. Lai, L. L.; Kwa, S. F.; Kozlowski, P. A.; Montefiori, D. C.; Nolen, T. L.; Hudgens, M. G.; Johnson, W. E.; Ferrari, G.; Hirsch, V. M.; Felber, B. K.; Pavlakis, G. N.; Earl, P. L.; Moss, B.; Amara, R. R.; Robinson, H. L.
  3. Vaccine. 2012, Feb; 30(9): 1737-1745.
  1. 18.   Enhanced Control of Pathogenic Simian Immunodeficiency Virus SIVmac239 Replication in Macaques Immunized with an Interleukin-12 Plasmid and a DNA Prime-Viral Vector Boost Vaccine Regimen
  2. Winstone, N.; Wilson, A. J.; Morrow, G.; Boggiano, C.; Chiuchiolo, M. J.; Lopez, M.; Kemelman, M.; Ginsberg, A. A.; Mullen, K.; Coleman, J. W.; Wu, C. D.; Narpala, S.; Ouellette, I.; Dean, H. J.; Lin, F.; Sardesai, N. Y.; Cassamasa, H.; McBride, D.; Felber, B. K.; Pavlakis, G. N.; Schultz, A.; Hudgens, M. G.; King, C. R.; Zamb, T. J.; Parks, C. L.; McDermott, A. B.
  3. Journal of Virology. 2011, Sep; 85(18): 9578-9587.
  1. 19.   Clonal Sequences Recovered from Plasma from Patients with Residual HIV-1 Viremia and on Intensified Antiretroviral Therapy Are Identical to Replicating Viral RNAs Recovered from Circulating Resting CD4(+) T Cells
  2. Anderson, J. A.; Archin, N. M.; Ince, W.; Parker, D.; Wiegand, A.; Coffin, J. M.; Kuruc, J.; Eron, J.; Swanstrom, R.; Margolis, D. M.
  3. Journal of Virology. 2011, May; 85(10): 5220-5223.
  1. 20.   Profound early control of highly pathogenic SIV by an effector memory T-cell vaccine
  2. Hansen, S. G.; Ford, J. C.; Lewis, M. S.; Ventura, A. B.; Hughes, C. M.; Coyne-Johnson, L.; Whizin, N.; Oswald, K.; Shoemaker, R.; Swanson, T.; Legasse, A. W.; Chiuchiolo, M. J.; Parks, C. L.; Axthelm, M. K.; Nelson, J. A.; Jarvis, M. A.; Piatak, M.; Lifson, J. D.; Picker, L. J.
  3. Nature. 2011, May; 473(7348): 523-U270.
  1. 21.   A formal MIM specification and tools for the common exchange of MIM diagrams: an XML-Based format, an API, and a validation method
  2. Luna, A.; Karac, E. I.; Sunshine, M.; Chang, L.; Nussinov, R.; Aladjem, M. I.; Kohn, K. W.
  3. Bmc Bioinformatics. 2011, May; 12: 13.
  1. 22.   Low-Dose Mucosal Simian Immunodeficiency Virus Infection Restricts Early Replication Kinetics and Transmitted Virus Variants in Rhesus Monkeys
  2. Liu, J. Y.; Keele, B. F.; Li, H.; Keating, S.; Norris, P. J.; Carville, A.; Mansfield, K. G.; Tomaras, G. D.; Haynes, B. F.; Kolodkin-Gal, D.; Letvin, N. L.; Hahn, B. H.; Shaw, G. M.; Barouch, D. H.
  3. Journal of Virology. 2010, Oct; 84(19): 10406-10412.
  1. 23.   Partial protection against SIV challenge by vaccination of adenovirus and MVA vectors in rhesus monkeys
  2. Wang, H. B.; Kondo, A.; Yoshida, A.; Yoshizaki, S.; Abe, S.; Bao, L. L.; Mizuki, N.; Ichino, M.; Klinman, D.; Okuda, K.; Shimada, M.
  3. Gene Therapy. 2010, Jan; 17(1): 4-13.
  1. 24.   Systemic Administration of Antiretrovirals Prior to Exposure Prevents Rectal and Intravenous HIV-1 Transmission in Humanized BLT Mice
  2. Denton, P. W.; Krisko, J. F.; Powell, D. A.; Mathias, M.; Kwak, Y. T.; Martinez-Torres, F.; Zou, W.; Payne, D. A.; Estes, J. D.; Garcia, J. V.
  3. Plos One. 2010, Jan; 5(1): 11.
  1. 25.   High Specific Infectivity of Plasma Virus from the Pre-Ramp-Up and Ramp-Up Stages of Acute Simian Immunodeficiency Virus Infection
  2. Ma, Z. M.; Stone, M.; Piatak, M.; Schweighardt, B.; Haigwood, N. L.; Montefiori, D.; Lifson, J. D.; Busch, M. P.; Miller, C. J.
  3. Journal of Virology. 2009 83(7): 3288-3297.
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