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  1. 1.   Modulation of the Substrate Preference of a MYST Acetyltransferase by a Scaffold Protein
  2. Sengupta, Raghuvir N; Brodsky, Oleg; Bingham, Patrick; Diehl, Wade C; Ferre, RoseAnn; Greasley, Samantha E; Johnson, Eric; Kraus, Michelle; Lieberman, Whitney; Meier,Jordan; Paul, Thomas A; Maegley, Karen A
  3. The Journal of Biological Chemistry. 2025, Feb 03; 108262.
  1. 2.   Regulation of RAF family kinases: new insights from recent structural and biochemical studies
  2. Spencer-Smith, Russell; Morrison,Deborah
  3. Biochemical Society Transactions. 2024, June 26; 52(3): 1061-1069.
  1. 3.   Nanocomplexes of doxorubicin and DNA fragments for efficient and safe cancer chemotherapy
  2. Mohammad, Saad N; Choi, Yeon Su; Chung, Jee Young; Cedrone,Edward; Neun,Barry; Dobrovolskaia,Marina; Yang, Xiaojing; Guo, Wei; Chew, Yap Ching; Kim, Juwan; Baek, Seunggul; Kim, Ik Soo; Fruman, David A; Kwon, Young Jik
  3. Journal of Controlled Release : official journal of the Controlled Release Society. 2023, Jan; 354: 91-108.
  1. 4.   Development of [1,2]oxazoloisoindoles tubulin polymerization inhibitors: Further chemical modifications and potential therapeutic effects against lymphomas
  2. Barreca, Marilia; Spanò, Virginia; Rocca, Roberta; Bivacqua, Roberta; Abel, Anne-Catherine; Maruca, Annalisa; Montalbano, Alessandra; Raimondi, Maria Valeria; Tarantelli, Chiara; Gaudio, Eugenio; Cascione, Luciano; Rinaldi, Andrea; Bai,Ruoli; Steinmetz, Michel O; Prota, Andrea E; Alcaro, Stefano; Hamel, Ernest; Bertoni, Francesco; Barraja, Paola
  3. European Journal of Medicinal Chemistry. 2022, Sep 08; 243: 114744.
  1. 5.   Stealth oxime ether lipid vesicles promote delivery of functional DsiRNA in human lung cancer A549 tumor bearing mouse xenografts
  2. Puri,Anu; Ibrahim, Faisal; O'Reilly Beringhs, André; Isemann, Camryn; Zakrevsky, Paul; Whittenburg, Abigail; Hargrove, Derek; Kanai,Tapan; Dillard, Rebecca S; de Val, Natalia; Nantz, Michael H; Lu, Xiuling; Shapiro,Bruce
  3. Nanomedicine : nanotechnology, biology, and medicine. 2022, Jun 04; 102572.
  1. 6.   Polycistronic baculovirus expression of SUGT1 enables high-yield production of recombinant leucine-rich repeat proteins and protein complexes
  2. Snead,Kelly; Wall,Vanessa; Ambrose,Hannah; Esposito,Dom; Drew,Matt
  3. Protein Expression and Purification. 2022, Feb 04; 193: 106061.
  1. 7.   Structural insights into the function of the catalytically active human Taspase1
  2. Nagaratnam, Nirupa; Delker, Silvia L.; Jernigan, Rebecca; Edwards, Thomas E.; Snider, Janey; Thifault, Darren; Williams, Dewight; Nannenga, Brent L.; Stofega, Mary; Sambucetti, Lidia; Hsieh, James J.; Flint,Andrew; Fromme, Petra; Martin-Garcia, Jose M.
  3. Structure. 2021, Aug 5; 29(8): 873-+.
  1. 8.   Mitochondrial DNA alterations underlie an irreversible shift to aerobic glycolysis in fumarate hydratase-deficient renal cancer
  2. Crooks, Daniel R.; Maio, Nunziata; Lang, Martin; Ricketts, Christopher J.; Vocke, Cathy D.; Gurram, Sandeep; Turan, Sevilay; Kim, Yun-Young; Cawthon, G. Mariah; Sohelian, Ferri; De Val, Natalia; Pfeiffer, Ruth M.; Jailwala, Parthav; Tandon, Mayank; Tran, Bao; Fan, Teresa W-M; Lane, Andrew N.; Ried, Thomas; Wangsa, Darawalee; Malayeri, Ashkan A.; Merino, Maria J.; Yang, Youfeng; Meier, Jordan L.; Ball, Mark W.; Rouault, Tracey A.; Srinivasan, Ramaprasad; Linehan, W. Marston
  3. Science Signaling. 2021, Jan 5; 14(664):
  1. 9.   The indenoisoquinoline LMP517: a novel antitumor agent targeting both TOP1 and TOP2
  2. Marzi, Laetitia; Sun, Yilun; Huang, Shar-Yin N; James,Amy; Difilippantonio,Simone; Pommier, Yves
  3. Molecular cancer therapeutics. 2020, AUG; 19(8): 1589-1597.
  1. 10.   Structure of the primed state of the ATPase domain of chromatin remodeling factor ISWI bound to the nucleosome
  2. Chittori, Sagar; Hong, Jingjun; Bai, Yawen; Subramaniam,Sriram
  3. Nucleic acids research. 2019, SEP 26; 47(17): 9400-9409.
  1. 11.   Developments in integrative modeling with dynamical interfaces
  2. Ozdemir, E. Sila; Nussinov,Ruth; Gursoy, Attila; Keskin, Ozlem
  3. CURRENT OPINION IN STRUCTURAL BIOLOGY. 2019, Jun; 56: 11-17.
  1. 12.   Localized RAS signaling drives cancer
  2. Basu, Sandip K; Basu,Srikanta; Johnson,Peter
  3. Oncoscience. 2019, Mar; 6(3-4): 298-300.
  1. 13.   Crystal structures of the complex of a kallikrein inhibitor from Bauhinia bauhinioides with trypsin and modeling of kallikrein complexes
  2. Li, Mi; Srp, Jaroslav; Gustchina, Alla; Dauter, Zbigniew; Mares, Michael; Wlodawer, Alexander
  3. Acta crystallographica. Section D, Structural biology. 2019, Jan 01; 75(Pt 1): 56-69.
  1. 14.   PRISM-EM: template interface-based modelling of multi-protein complexes guided by cryo-electron microscopy density maps (vol 72, pg 1137, 2016)
  2. Kuzu, Guray; Keskin, Ozlem; Nussinov, Ruth; Gursoy, Attila
  3. ACTA CRYSTALLOGRAPHICA SECTION D-STRUCTURAL BIOLOGY. 2018, JAN; 74(Pt 1): 65-66.
  1. 15.   Cryo-EM Structures Reveal Mechanism and Inhibition of DNA Targeting by a CRISPR-Cas Surveillance Complex
  2. Guo, Tai Wei; Bartesaghi, Alberto; Yang, Hui; Falconieri, Veronica; Rao, Prashant; Merk, Alan; Eng, Edward T; Raczkowski, Ashleigh M; Fox, Tara; Earl, Lesley A; Patel, Dinshaw J; Subramaniam, Sriram
  3. Cell. 2017, Oct 05; 171(2): 414-426.e12.
  1. 16.   PRISM-EM: template interface-based modelling of multi-protein complexes guided by cryo-electron microscopy density maps
  2. Kuzu, G.; Keskin, O.; Nussinov, R.; Gursoy, A.
  3. Acta crystallographica. Section D, Structural biology. 2016, 1-Oct; 72(Pt 10): 1137-1148.
  1. 17.   Fast and accurate modeling of protein-protein interactions by combining template-interface-based docking with flexible refinement
  2. Tuncbag, N.; Keskin, O.; Nussinov, R.; Gursoy, A.
  3. Proteins-Structure Function and Bioinformatics. 2012, Apr; 80(4): 1239-1249.
  1. 18.   C5a-regulated CCAAT/Enhancer-binding Proteins beta and delta Are Essential in Fc gamma Receptor-mediated Inflammatory Cytokine and Chemokine Production in Macrophages
  2. Yan, C. G.; Zhu, M.; Staiger, J.; Johnson, P. F.; Gao, H. W.
  3. Journal of Biological Chemistry. 2012, Jan; 287(5): 3217-3230.
  1. 19.   The interdomain linker region of HIV-1 capsid protein is a critical determinant of proper core assembly and stability
  2. Jiang, J. Y.; Ablan, S. D.; Derebail, S.; Hercik, K.; Soheilian, F.; Thomas, J. A.; Tang, S. X.; Hewlett, I.; Nagashima, K.; Gorelick, R. J.; Freed, E. O.; Levin, J. G.
  3. Virology. 2011, Dec; 421(2): 253-265.
  1. 20.   Hydrodynamic Delivery of Human IL-15 cDNA Increases Murine Natural Killer Cell Recovery after Syngeneic Bone Marrow Transplantation
  2. Barao, I.; Alvarez, M.; Redelman, D.; Weiss, J. M.; Ortaldo, J. R.; Wiltrout, R. H.; Murphy, W. J.
  3. Biology of Blood and Marrow Transplantation. 2011, Dec; 17(12): 1754-1764.
  1. 21.   An NMR strategy for fragment-based ligand screening utilizing a paramagnetic lanthanide probe
  2. Saio, T.; Ogura, K.; Shimizu, K.; Yokochi, M.; Burke, T. R.; Inagaki, F.
  3. Journal of Biomolecular Nmr. 2011, Nov; 51(3): 395-408.
  1. 22.   Structural and Functional Analyses of the Second-Generation Integrase Strand Transfer Inhibitor Dolutegravir (S/GSK1349572)
  2. Hare, S.; Smith, S. J.; Metifiot, M.; Jaxa-Chamiec, A.; Pommier, Y.; Hughes, S. H.; Cherepanov, P.
  3. Molecular Pharmacology. 2011, Oct; 80(4): 565-572.
  1. 23.   Predicting protein-protein interactions on a proteome scale by matching evolutionary and structural similarities at interfaces using PRISM
  2. Tuncbag, N.; Gursoy, A.; Nussinov, R.; Keskin, O.
  3. Nature Protocols. 2011, Sep; 6(9): 1341-1354.
  1. 24.   Structure and function of RapA: A bacterial Swi2/Snf2 protein required for RNA polymerase recycling in transcription
  2. Jin, D. J.; Zhou, Y. N.; Shaw, G.; Ji, X. H.
  3. Biochimica Et Biophysica Acta-Gene Regulatory Mechanisms. 2011, Sep; 1809(9): 470-475.
  1. 25.   SymmRef: A flexible refinement method for symmetric multimers
  2. Mashiach-Farkash, E.; Nussinov, R.; Wolfson, H. J.
  3. Proteins-Structure Function and Bioinformatics. 2011, Sep; 79(9): 2607-2623.
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