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  1. 1.   Allostery in Its Many Disguises: From Theory to Applications
  2. Wodak, Shoshana J.; Paci, Emanuele; Dokholyan, Nikolay; Berezovsky, Igor N.; Horovitz, Amnon; Li, Jing; Hilser, Vincent J.; Behar, Ivet; Karanicolas, John; Stock, Gerhard; Hamm, Peter; Stote, Roland H.; Eberhardt, Jerome; Chebaro, Yassmine; Dejaegere, Annick; Cecchini, Marco; Changeux, Jean-Pierre; Bolhuis, Peter G.; Vreede, Jocelyne; Faccioli, Pietro; Orioli, Simone; Ravasio, Riccardo; Yen, Le; Brito, Carolina; Wyart, Matthieu; Gkeka, Paraskevi; Rivalta, Ivan; Palermo, Giulia; Mccammon, J. Andrew; Panecka-Hofman, Joanna; Wade, Rebecca C.; Di Pizio, Antonella; Niv, Masha Y.; Nussinov,Ruth; Tsai,Chung-Jung; Jang,Hyunbum; Padhorny, Dzmitry; Kozakov, Dima; Mcleish, Tom
  3. Structure (London, England : 1993). 2019, Apr 2; 27(4): 566-578.
  1. 2.   Supramolecular complexes of quantum dots and a polyamidoamine (PAMAM)-folate derivative for molecular imaging of cancer cells
  2. Geraldo, D. A.; Duran-Lara, E. F.; Aguayo, D.; Cachau, R. E.; Tapia, J.; Esparza, R.; Yacaman, M. J.; Gonzalez-Nilo, F. D.; Santos, L. S.
  3. Analytical and Bioanalytical Chemistry. 2011, Apr; 400(2): 483-492.
  1. 3.   Matrix Domain Modulates HIV-1 Gag's Nucleic Acid Chaperone Activity via Inositol Phosphate Binding
  2. Jones, C. P.; Datta, S. A. K.; Rein, A.; Rouzina, I.; Musier-Forsyth, K.
  3. Journal of Virology. 2011, Feb; 85(4): 1594-1603.
  1. 4.   Comparing interfacial dynamics in protein-protein complexes: an elastic network approach
  2. Zen, A.; Micheletti, C.; Keskin, O.; Nussinov, R.
  3. Bmc Structural Biology. 2010, Aug; 10: 13.
  1. 5.   Why Does Binding of Proteins to DNA or Proteins to Proteins Not Necessarily Spell Function?
  2. Ma, B. Y.; Tsai, C. J.; Pan, Y. P.; Nussinov, R.
  3. Acs Chemical Biology. 2010, Mar; 5(3): 265-272.
  1. 6.   HingeProt: Automated prediction of hinges in protein structures
  2. Emekli, U.; Schneidman-Duhovny, D.; Wolfson, H. J.; Nussinov, R.; Haliloglu, T.
  3. Proteins-Structure Function and Bioinformatics. 2008 70(4): 1219-1227.
  1. 7.   DNA bending in transcription initiation
  2. Tchernaenko, V.; Radlinska, M.; Lubkowska, L.; Halvorson, H. R.; Kashlev, M.; Lutter, L. C.
  3. Biochemistry. 2008 47(7): 1885-1895.
  1. 8.   Photoinduced reactivity of the HIV-1 envelope glycoprotein with a membrane-embedded probe reveals insertion of portions of the HIV-1 gp41 cytoplasmic tail into the viral membrane
  2. Viard, M.; Ablan, S. D.; Zhou, M.; Veenstra, T. D.; Freed, E. O.; Raviv, Y.; Blumenthal, R.
  3. Biochemistry. 2008 47(7): 1977-1983.
  1. 9.   Structure and activity of Yersinia pestis 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase as a novel target for the development of antiplague therapeutics
  2. Blaszczyk, J.; Li, Y.; Cherry, S.; Alexandratos, J.; Wu, Y.; Shaw, G.; Tropea, J. E.; Waugh, D. S.; Yan, H. G.; Ji, X. H.
  3. Acta Crystallographica Section D-Biological Crystallography. 2007, Nov; 63: 1169-1177.
  1. 10.   Physiological levels of virion-associated human immunodeficiency virus type 1 envelope induce coreceptor-dependent calcium flux
  2. Melar, M.; Ott, D. E.; Hope, T. J.
  3. Journal of Virology. 2007, Feb; 81(4): 1773-1785.
  1. 11.   Modular architecture of protein structures and allosteric communications: potential implications for signaling proteins and regulatory linkages
  2. del Sol, A.; Arauzo-Bravo, M. J.; Moya, D. A.; Nussinov, R.
  3. Genome Biology. 2007 8(5):
  1. 12.   Crystal structures of clinically relevant Lys103Asn/Tyr181Cys double mutant HIV-1 reverse transcriptase in complexes with ATP and non-nucleoside inhibitor HBY 097
  2. Das, K.; Sarafianos, S. G.; Clark, A. D.; Boyer, P. L.; Hughes, S. H.; Arnold, E.
  3. Journal of Molecular Biology. 2007, Jan; 365(1): 77-89.
  1. 13.   Structure of severe acute respiratory syndrome coronavirus receptor-binding domain complexed with neutralizing antibody
  2. Prabakaran, P.; Gan, J. H.; Feng, Y.; Zhu, Z. Y.; Choudhry, V.; Xiao, X. D.; Ji, X. H.; Dimitrov, D. S.
  3. Journal of Biological Chemistry. 2006, JUN 9; 281(23): 15829-15836.
  1. 14.   HIV-1 reverse transcriptase structure with RNase H inhibitor dihydroxy benzoyl naphthyl hydrazone bound at a novel site
  2. Himmel, D. M.; Sarafianos, S. G.; Dharmasena, S.; Hossain, M. M.; McCoy-Simandle, K.; Ilina, T.; Clark, A. D.; Knight, J. L.; Julias, J. G.; Clark, P. K.; Krogh-Jespersen, K.; Levy, R. M.; Hughes, S. H.; Parniak, M. A.; Arnold, E.
  3. Acs Chemical Biology. 2006 1(11): 702-712.
  1. 15.   Optimization of multiple-sequence alignment based on multiple-structure alignment
  2. Shatsky, M.; Nussinov, R.; Wolfson, H. J.
  3. Proteins-Structure Function and Bioinformatics. 2006, JAN 1; 62(1): 209-217.
  1. 16.   Multifunctional roles of the conserved arg residues in the second region of homology of p97/valosin-containing protein
  2. Wang, Q.; Song, C. C.; Irizarry, L.; Dai, R. M.; Zhang, X. D.; Li, C. C. H.
  3. Journal of Biological Chemistry. 2005, DEC 9; 280(49): 40515-40523.
  1. 17.   Crystal structures for HIV-1 reverse transcriptase in complexes with three pyridinone derivatives: A new class of non-nucleoside inhibitors effective against a broad range of drug-resistant strains
  2. Himmel, D. M.; Das, K.; Clark, A. D.; Hughes, S. H.; Benjahad, A.; Oumouch, S.; Guillemont, J.; Coupa, S.; Poncelet, A.; Csoka, I.; Meyer, C.; Andries, K.; Nguyen, C. H.; Grierson, D. S.; Arnold, E.
  3. Journal of Medicinal Chemistry. 2005, DEC 1; 48(24): 7582-7591.
  1. 18.   Transmembrane inhibitors of P-glycoprotein, an ABC transporter
  2. Tarasova, N. I.; Seth, R.; Tarasov, S. G.; Kosakowska-Cholody, T.; Hrycyna, C. A.; Gottesman, M. M.; Michejda, C. J.
  3. Journal of Medicinal Chemistry. 2005, JUN 2; 48(11): 3768-3775.
  1. 19.   From structure to function: Methods and applications
  2. Wolfson, H. J.; Shatsky, M.; Schneidman-Duhovny, D.; Dror, O.; Shulman-Peleg, A.; Ma, B. Y.; Nussinov, R.
  3. Current Protein & Peptide Science. 2005, APR; 6(2): 171-183.
  1. 20.   Mutation of arginine 228 to lysine enhances the glucosyltransferase activity of bovine beta-1,4-galactosyltransferase I
  2. Ramakrishnan, B.; Boeggeman, E.; Qasba, P. K.
  3. Biochemistry. 2005, MAR 8; 44(9): 3202-3210.
  1. 21.   Release factors eRF1 and RF2: A universal mechanism controls the large conformational changes
  2. Ma, B. Y.; Nussinov, R.
  3. Biophysical Journal. 2005, JAN; 88(1, Part 2, Suppl. S): 210A-210A.
  1. 22.   Substrate-induced conformational changes in glycosyltransferases
  2. Qasba, P. K.; Ramakrishnan, B.; Boeggeman, E.
  3. Trends in Biochemical Sciences. 2005, JAN; 30(1): 53-62.
  1. 23.   Release factors eRF1 and RF2 - A universal mechanism controls the large conformational changes
  2. Ma, B. Y.; Nussinov, R.
  3. Journal of Biological Chemistry. 2004, DEC 17; 279(51): 53875-53885.
  1. 24.   Taking aim at a moving target: designing drugs to inhibit drug-resistant HIV-1 reverse transcriptases
  2. Sarafianos, S. G.; Das, K.; Hughes, S. H.; Arnold, E.
  3. Current Opinion in Structural Biology. 2004, DEC; 14(6): 716-730.
  1. 25.   Is allostery an intrinsic property of all dynamic proteins?
  2. Gunasekaran, K.; Ma, B. Y.; Nussinov, R.
  3. Proteins-Structure Function and Bioinformatics. 2004, NOV 15; 57(3): 433-443.
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