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  1. 1.   Polymorphic Triple beta-Sheet Structures Contribute to Amide Hydrogen/Deuterium (H/D) Exchange Protection in the Alzheimer Amyloid beta 42 Peptide
  2. Ma, B. Y.; Nussinov, R.
  3. Journal of Biological Chemistry. 2011, Sep; 286(39): 34244-34253.
  1. 2.   The Unique Alzheimer's beta-Amyloid Triangular Fibril Has a Cavity along the Fibril Axis under Physiological Conditions
  2. Miller, Y.; Ma, B. Y.; Nussinov, R.
  3. Journal of the American Chemical Society. 2011, Mar; 133(8): 2742-2748.
  1. 3.   Molecular-Level Examination of Cu2+ Binding Structure for Amyloid Fibrils of 40-Residue Alzheimer's beta by Solid-State NMR Spectroscopy
  2. Parthasarathy, S.; Long, F.; Miller, Y.; Xiao, Y. L.; McElheny, D.; Thurber, K.; Ma, B. Y.; Nussinov, R.; Ishii, Y.
  3. Journal of the American Chemical Society. 2011, Mar; 133(10): 3390-3400.
  1. 4.   Polymorphic C-terminal beta-Sheet Interactions Determine the Formation of Fibril or Amyloid beta-derived Diffusible Ligand-like Globulomer for the Alzheimer A beta 42 Dodecamer
  2. Ma, B. Y.; Nussinov, R.
  3. Journal of Biological Chemistry. 2010, Nov; 285(47): 37102-37110.
  1. 5.   Computational strategies for the automated design of RNA nanoscale structures from building blocks using NanoTiler
  2. Bindewald, E.; Grunewald, C.; Boyle, B.; O'Connor, M.; Shapiro, B. A.
  3. Journal of Molecular Graphics & Modelling. 2008 27(3): 299-308.
  1. 6.   Modeling the Alzheimer A beta(17-42) fibril architecture: Tight intermolecular sheet-sheet association and intramolecular hydrated cavities
  2. Zheng, J.; Jang, H.; Ma, B.; Tsai, C. J.; Nussinov, R.
  3. Biophysical Journal. 2007, Nov; 93(9): 3046-3057.
  1. 7.   Simulations as analytical tools to understand protein aggregation and predict amyloid conformation
  2. Ma, B. Y.; Nussinov, R.
  3. Current Opinion in Chemical Biology. 2006, Oct; 10(5): 445-452.
  1. 8.   CorreLogo: an online server for 3D sequence logos of RNA and DNA alignments
  2. Bindewald, E.; Schneider, T. D.; Shapiro, B. A.
  3. Nucleic Acids Research. 2006, Jul; 34: W405-W411.
  1. 9.   Computational study of the fibril organization of polyglutamine repeats reveals a common motif identified in beta-helices
  2. Zanuy, D.; Gunasekaran, K.; Lesk, A. M.; Nussinov, R.
  3. Journal of Molecular Biology. 2006, Apr; 358(1): 330-345.
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