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  1. 1.   TRa1 mutant suppresses KLF9 to cause endometrial metaplasia with ectopic IL-33 expression leading to uterine fibrosis and infertility
  2. Edmondson,Elijah; Kimura, Takahito; Hwang, Eunmi; Kim, Minjun; Warner,Andrew; Zhu, Yuelin; Zhao, Li; Yu, Yanlin; Zhu, Xuguang; Hernandez, Maria; Kedei, Noemi; Cheng, Sheue-Yann
  3. Scientific Reports. 2025, Jan 31; 15(1): 3892.
  1. 2.   Single-cell transcriptional analysis of murine norovirus infection in a human intestinal cell line
  2. Matsushima, Yuki; Levenson, Eric A; Chaimongkol, Natthawan; Harris, Loyall; Zhao,Yongmei; Turan,Sevilay; Otaizo-Carrasquero, Francisco; Ganesan, Sundar; Hornick, Katherine M; Martens, Craig; Sosnovtsev, Stanislav V; Green, Kim Y
  3. Journal of Virology. 2024, Oct 30; e0161724.
  1. 3.   Human Cripto-1 and Cripto-3 Protein Expression in Normal and Malignant Settings That Conflicts with Established Conventions
  2. Cuttitta,Frank; García-Sanmartín, Josune; Feng,Yang; Sunday, Mary Elizabeth; Kim, Young S; Martínez, Alfredo
  3. Cancers. 2024, Oct 23; 16(21):
  1. 4.   Microenvironment shapes small-cell lung cancer neuroendocrine states and presents therapeutic opportunities
  2. Desai, Parth; Takahashi, Nobuyuki; Kumar, Rajesh; Nichols, Samantha; Malin, Justin; Hunt, Allison; Schultz, Christopher; Cao, Yingying; Tillo, Desiree; Nousome, Darryl; Chauhan, Lakshya; Sciuto, Linda; Jordan, Kimberly; Rajapakse, Vinodh; Tandon, Mayank; Lissa, Delphine; Zhang, Yang; Kumar, Suresh; Pongor, Lorinc; Singh, Abhay; Schroder, Brett; Sharma, Ajit Kumar; Chang, Tiangen; Vilimas, Rasa; Pinkiert, Danielle; Graham, Chante; Butcher,Donna; Warner,Andrew; Sebastian, Robin; Mahon, Mimi; Baker, Karen; Cheng, Jennifer; Berger, Ann; Lake, Ross; Abel, Melissa; Krishnamurthy, Manan; Chrisafis, George; Fitzgerald, Peter; Nirula, Micheal; Goyal, Shubhank; Atkinson, Devon; Bateman, Nicholas W; Abulez, Tamara; Nair, Govind; Apolo, Andrea; Guha, Udayan; Karim,Baktiar; El Meskini,Rajaa; Ohler,Zoe; Jolly, Mohit Kumar; Schaffer, Alejandro; Ruppin, Eytan; Kleiner, David; Miettinen, Markku; Brown, G Tom; Hewitt, Stephen; Conrads, Thomas; Thomas, Anish
  3. Cell Reports. Medicine. 2024, Jun 18; 5(6): 101610.
  1. 5.   Spatiotemporal modulation of growth factors directs the generation of multilineage mouse embryonic stem cell-derived mammary organoids
  2. Sahu,Sounak; Sahoo, Sarthak; Sullivan,Teresa; O'Sullivan,Theresa; Turan,Sevilay; Albaugh,Mary; Burkett,Sandra; Tran,Bao; Salomon,David; Kozlov,Serguei; Koehler, Karl R; Jolly, Mohit Kumar; Sharan,Shyam
  3. Developmental Cell. 2024, Jan 22; 59
  1. 6.   Natural history of Ebola virus disease in rhesus monkeys shows viral variant emergence dynamics and tissue-specific host responses
  2. Normandin, Erica; Triana, Sergio; Raju, Siddharth S; Lan, Tammy C T; Lagerborg, Kim; Rudy, Melissa; Adams, Gordon C; DeRuff, Katherine C; Logue, James; Liu, David; Strebinger, Daniel; Rao, Arya; Messer, Katelyn S; Sacks, Molly; Adams, Ricky D; Janosko, Krisztina; Kotliar, Dylan; Shah, Rickey; Crozier,Ian; Rinn, John L; Melé, Marta; Honko, Anna N; Zhang, Feng; Babadi, Mehrtash; Luban, Jeremy; Bennett, Richard S; Shalek, Alex K; Barkas, Nikolaos; Lin, Aaron E; Hensley, Lisa E; Sabeti, Pardis C; Siddle, Katherine J
  3. Cell Genomics. 2023, Dec 13; 3(12): 100440.
  1. 7.   Pan-cancer analysis of post-translational modifications reveals shared patterns of protein regulation
  2. Geffen, Yifat; Anand, Shankara; Akiyama, Yo; Yaron, Tomer M; Song, Yizhe; Johnson, Jared L; Govindan, Akshay; Babur, Özgün; Li, Yize; Huntsman, Emily; Wang, Liang-Bo; Birger, Chet; Heiman, David I; Zhang, Qing; Miller, Mendy; Maruvka, Yosef E; Haradhvala, Nicholas J; Calinawan, Anna; Belkin, Saveliy; Kerelsky, Alexander; Clauser, Karl R; Krug, Karsten; Satpathy, Shankha; Payne, Samuel H; Mani, D R; Gillette, Michael A; Dhanasekaran, Saravana M; Thiagarajan,Mathangi; Mesri, Mehdi; Rodriguez, Henry; Robles, Ana I; Carr, Steven A; Lazar, Alexander J; Aguet, François; Cantley, Lewis C; Ding, Li; Getz, Gad
  3. Cell. 2023, Aug 09;
  1. 8.   Whole organism profiling of the Timp gene family
  2. Peeney, David; Fan, Yu; Gurung, Sadeechya; Lazaroff, Carolyn; Ratnayake, Shashikala; Warner,Andrew; Karim,Baktiar; Meerzaman, Daoud; Stetler-Stevenson, William G
  3. Matrix Biology Plus. 2023, Jun; 18: 100132.
  1. 9.   Phenotypic plasticity and reduced tissue retention of exhausted tumor-infiltrating T cells following neoadjuvant immunotherapy in head and neck cancer
  2. Sievers, Cem; Craveiro, Marco; Friedman, Jay; Robbins, Yvette; Yang, Xinping; Bai, Ke; Nguyen, Andy; Redman, Jason M; Chari,Raj; Soon-Shiong, Patrick; Schlom, Jeffrey; Gulley, James; Allen, Clint T
  3. Cancer Cell. 2023, Apr 12; 41(5): 887-902.e5.
  1. 10.   IL-4, IL-13 and IFN-gamma induced genes in highly purified human neutrophils
  2. Kummola, Laura; Salomaa, Tanja; Ortutay, Zsuzsanna; Savan, Ram; Young,Howard; Junttila, Ilkka S
  3. Cytokine. 2023, Feb 19; 164: 156159.
  1. 11.   Antisense pairing and SNORD13 structure guide RNA cytidine acetylation
  2. Thalalla Gamage,Supuni; Bortolin-Cavaillé, Marie-Line; Link, Courtney; Bryson, Keri; Sas-Chen, Aldema; Schwartz, Schraga; Cavaillé, Jérôme; Meier,Jordan
  3. RNA (New York, N.Y.). 2022, Sep 20;
  1. 12.   Direct epitranscriptomic regulation of mammalian translation initiation through N4-acetylcytidine
  2. Arango, Daniel; Sturgill, David; Yang,Renbin; Kanai,Tapan; Bauer, Paulina; Roy, Jyoti; Wang, Ziqiu; Hosogane, Masaki; Schiffers, Sarah; Oberdoerffer, Shalini
  3. Molecular Cell. 2022, Jun 07;
  1. 13.   Optimization of production and characterization of a recombinant soluble human Cripto-1 protein inhibiting self-renewal of cancer stem cells
  2. Afify, Said M; Hassan, Ghmkin; Nawara, Hend M; H Zahra, Maram; Xu, Yanning; Alam, Md Jahangir; Saitoh, Koichi; Mansour, Hager; Abu Quora, Hagar A; Sheta, Mona; Monzur, Sadia; Du, Juan; Oh, Sue Young; Seno, Akimasa; Salomon,David; Seno, Masaharu
  3. Journal of Cellular Biochemistry. 2022, May 16;
  1. 14.   Single-cell atlas of tumor cell evolution in response to therapy in hepatocellular carcinoma and intrahepatic cholangiocarcinoma
  2. Ma, Lichun; Wang, Limin; Khatib, Subreen A; Chang, Ching-Wen; Heinrich, Sophia; Dominguez, Dana A; Forgues, Marshonna; Candia, Julián; Hernandez,Maria; Kelly,Michael; Zhao,Yongmei; Tran,Bao; Hernandez, Jonathan M; Davis, Jeremy L; Kleiner, David E; Wood, Bradford J; Greten, Tim F; Wang, Xin Wei
  3. Journal of Hepatology. 2021, Dec; 75(6): 1397-1408.
  1. 15.   Whence CRIPTO: The Reemergence of an Oncofetal Factor in 'Wounds' That Fail to Heal
  2. Freeman, David W.; Sousa, Elisa Rodrigues; Karkampouna, Sofia; Zoni, Eugenio; Gray, Peter C.; Salomon,David; Kruithof-de Julio, Marianna; Spike, Benjamin T.
  3. International journal of molecular sciences. 2021, Sep; 22(18):
  1. 16.   Parallel and Population-specific Gene Regulatory Evolution in Cold-Adapted Fly Populations
  2. Huang, Yuheng; Lack,Justin; Hoppel, Grant T.; Pool, John E.
  3. Genetics. 2021, May 14; 218
  1. 17.   Cripto-1 as a Potential Target of Cancer Stem Cells for Immunotherapy
  2. Ishii, Hiroko; Afify, Said M.; Hassan, Ghmkin; Salomon,David; Seno, Masaharu
  3. Cancers. 2021, May; 13(10):
  1. 18.   Visualizing RNA Cytidine Acetyltransferase Activity by Northern Blotting
  2. Bryson, Keri M; Thalalla Gamage,Supuni; Meier,Jordan
  3. Current protocols in chemical biology. 2020, Dec; 12(4): e89.
  1. 19.   Single Cell Sequencing of the Pineal Gland: The Next Chapter
  2. Coon, Steven L.; Fu, Cong; Hartley, Steven W.; Holtzclaw, Lynne; Mays, Joseph C.; Kelly,Michael; Kelley, Matthew W.; Mullikin, James C.; Rath, Martin F.; Savastano, Luis E.; Klein, David C.
  3. FRONTIERS IN ENDOCRINOLOGY. 2019, SEP 20; 10: 590.
  1. 20.   Towards Better Understanding of KSHV Life Cycle: from Transcription and Posttranscriptional Regulations to Pathogenesis
  2. Yan, Lijun; Majerciak,Vladimir; Zheng,Zhi-Ming; Lan, Ke
  3. Virologica Sinica. 2019, APR; 34(2): 135-161.
  1. 21.   Sulforaphane Suppresses the Growth of Triple-negative Breast Cancer Stem-like Cells In vitro and In vivo
  2. Castro, Nadia P.; Rangel, Maria C.; Merchant, Anand S.; MacKinnon, Gabriel; Cuttitta,Frank; Salomon,David; Kim, Young S.
  3. CANCER PREVENTION RESEARCH. 2019, Mar; 12(3): 147-158.
  1. 22.   Exogenous Cripto-1 Suppresses Self-Renewal of Cancer Stem Cell Model
  2. Alam, Md Jahangir; Takahashi, Ryota; Afify, Said M.; Oo, Aung Ko Ko; Kumon, Kazuki; Nawara, Hend M.; Khayrani, Aprilliana Cahya; Du, Juan; Zahra, Maram H.; Seno, Akimasa; Salomon, David; Seno, Masaharu
  3. International journal of molecular sciences. 2018, NOV; 19(11):
  1. 23.   Transcriptome Assessment of Erythema Migrans Skin Lesions in Patients with Early Lyme Disease Reveals Predominant Interferon Signaling
  2. Marques, Adriana; Schwartz, Ira; Wormser, Gary P; Wang, Yanmei; Hornung, Ronald L; Demirkale, Cumhur Y; Munson, Peter J; Turk, Siu-Ping; Williams, Carla; Lee, Chyi-Chia Richard; Yang, Jun; Petzke, Mary M
  3. Journal of Infectious Diseases. 2018, Jan 1; 217(1): 158-167.
  1. 24.   Myc Regulates Chromatin Decompaction and Nuclear Architecture during B Cell Activation
  2. Kieffer-Kwon, Kyong-Rim; Nimura, Keisuke; Rao, Suhas S P; Xu, Jianliang; Jung, Seolkyoung; Pekowska, Aleksandra; Dose, Marei; Stevens, Evan; Mathe, Ewy; Dong, Peng; Huang, Su-Chen; Ricci, Maria Aurelia; Baranello, Laura; Zheng, Ying; Tomassoni Ardori, Francesco; Resch, Wolfgang; Stavreva, Diana; Nelson, Steevenson; McAndrew, Michael; Casellas, Adriel; Finn, Elizabeth; Gregory, Charles; St Hilaire, Brian Glenn; Johnson, Steven M; Dubois, Wendy; Cosma, Maria Pia; Batchelor, Eric; Levens, David; Phair, Robert D; Misteli, Tom; Tessarollo, Lino; Hager, Gordon; Lakadamyali, Melike; Liu, Zhe; Floer, Monique; Shroff, Hari; Aiden, Erez Lieberman; Casellas, Rafael
  3. Molecular Cell. 2017, Aug 17; 67(4): 566-578.
  1. 25.   Common Molecular Subtypes Among Asian Hepatocellular Carcinoma and Cholangiocarcinoma
  2. Chaisaingmongkol, Jittiporn; Budhu, Anuradha; Dang, Hien; Rabibhadana, Siritida; Pupacdi, Benjarath; Kwon, So Mee; Forgues, Marshonna; Pomyen, Yotsawat; Bhudhisawasdi, Vajarabhongsa; Lertprasertsuke, Nirush; Chotirosniramit, Anon; Pairojkul, Chawalit; Auewarakul, Chirayu U; Sricharunrat, Thaniya; Phornphutkul, Kannika; Sangrajrang, Suleeporn; Cam, Maggie; He, Ping; Hewitt, Stephen M; Ylaya, Kris; Wu, Xiaolin; Andersen, Jesper B; Thorgeirsson, Snorri S; Waterfall, Joshua J; Zhu, Yuelin J; Walling, Jennifer; Stevenson, Holly S; Edelman, Daniel; Meltzer, Paul S; Loffredo, Christopher A; Hama, Natsuko; Shibata, Tatsuhiro; Wiltrout, Robert H; Harris, Curtis C; Mahidol, Chulabhorn; Ruchirawat, Mathuros; Wang, Xin W
  3. Cancer Cell. 2017, Jul 10; 32(1): 57-70.
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