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  1. 1.   Structural and mechanistic bases for resistance of the M66I capsid variant to lenacapavir
  2. Briganti, Lorenzo; Annamalai, Arun S; Bester, Stephanie M; Wei, Guochao; Andino-Moncada, Jonathan R; Singh, Satya P; Kleinpeter,Alexander; Tripathi, Meghna; Nguyen, Binh; Radhakrishnan, Rajalingam; Singh, Parmit K; Greenwood, Juliet; Schope, Lauren I; Haney, Reed; Huang, Szu-Wei; Freed, Eric O; Engelman, Alan N; Francis, Ashwanth C; Kvaratskhelia, Mamuka
  3. mBio. 2025, Apr 15; e0361324.
  1. 2.   Lenacapavir disrupts HIV-1 core integrity while stabilizing the capsid lattice
  2. Li,Chenglei; Burdick,Ryan; Siddiqui,Rokeya; Janaka, Sanath Kumar; Hsia,Ru-Ching; Hu, Wei-Shau; Pathak,Vinay
  3. Proceedings of the National Academy of Sciences of the United States of America. 2025, Apr 08; 122(14): e2420497122.
  1. 3.   Co-incubation of Short Amphiphilic Peptides with Dicer Substrate RNAs Results in ß-Sheet Fibrils for Enhanced Gene Silencing in Cancer Cells
  2. Gupta, Kshitij; Parlea, Lorena; Puri,Anu; Smith, Katelyn; Puri,Anu; Bergman, Joseph T; Kim, Taejin; Shapiro,Bruce
  3. RNA Nanomed. 2024, Dec; 1(1): 61-78.
  1. 4.   Affinity Tag-Free Purification of SARS-CoV-2 N Protein and Its Crystal Structure in Complex with ssDNA
  2. Maiti,Atanu; Matsuo,Hiroshi
  3. Biomolecules. 2024, Nov 30; 14(12):
  1. 5.   Analytical measuring interval, linearity, and precision of serology assays for detection of SARS-CoV-2 antibodies according to CLSI guidelines
  2. Haynesworth,Katrina; Kemp,Troy; Loftus,Sarah; Metz,Jordan; Castro, Nicholas C; Bullock, Jimmie; Fetterer, David; Pinto,Ligia
  3. mSphere. 2024, Oct 31; e0039324.
  1. 6.   Impact of baseline SARS-CoV-2 load in plasma and upper airways on the incidence of acute extrapulmonary complications of COVID-19: a multicentric, prospective, cohort study
  2. Jensen, Tomas O; Harper, Katrina; Gupta, Shaili; Liu, Sean T; Dharan, Nila J; Baker, Jason V; Pett, Sarah L; Shaw-Saliba, Kathryn; Esmail, Aliasgar; Ho, Minh Q; Almasri, Eyad; Dewar,Robin; Lundgren, Jens; Vock, David M
  3. Clinical Infectious Diseases : an official publication of the Infectious Diseases Society of America. 2024, Sep 13;
  1. 7.   Genomic profiles and clinical presentation of chordoma
  2. Koka, Hela; Zhou,Weiyin; McMaster, Mary L; Bai, Jiwei; Luo,Wen; Klein, Alyssa; Zhang, Tongwu; Hua,Xing; Li, Xin; Wang,Difei; Xiong, Yujia; Jones,Kristine; Vogt,Aurelie; Hicks,Belynda; Parry, Dilys; Goldstein, Alisa M; Yang, Xiaohong R
  3. Acta Neuropathologica Communications. 2024, Aug 12; 12(1): 129.
  1. 8.   Telomere length and clonal chromosomal alterations in peripheral blood of patients with severe aplastic anaemia
  2. Strauss, Joshua D; Brown, Derek W; Zhou, Weiyin; Dagnall,Casey; Yuan, Jian-Min; Im, Annie; Savage, Sharon A; Wang, Youjin; Rafati, Maryam; Spellman, Stephen R; Gadalla, Shahinaz M
  3. British Journal of Haematology. 2024, Aug 05;
  1. 9.   Severe Acute Respiratory Syndrome Coronavirus 2 Plasma Antibody and Nucleocapsid Antigen Status Predict Outcomes in Outpatients With Coronavirus Disease 2019
  2. Jilg, Nikolaus; Giganti, Mark J; Chew, Kara W; Shaw-Saliba, Katy; Ritz, Justin; Moser, Carlee; Evering, Teresa H; Daar, Eric S; Eron, Joseph J; Currier, Judith S; Hughes, Michael D; Lane, H Cliff; Dewar,Robin; Smith, Davey M; Li, Jonathan Z
  3. Clinical Infectious diseases : an official publication of the Infectious Diseases Society of America. 2024, Jul 17;
  1. 10.   Cationic Residues of the HIV-1 Nucleocapsid Protein Enable DNA Condensation to Maintain Viral Core Particle Stability during Reverse Transcription
  2. Gien, Helena; Morse, Michael; McCauley, Micah J; Rouzina, Ioulia; Gorelick,Robert; Williams, Mark C
  3. Viruses. 2024, May 29; 16(6): 872.
  1. 11.   N-Substituted Bicyclic Carbamoyl Pyridones: Integrase Strand Transfer Inhibitors that Potently Inhibit Drug-Resistant HIV-1 Integrase Mutants
  2. Mahajan,Pankaj; Smith,Steven; Li, Min; Craigie, Robert; Hughes,Stephen; Zhao,Xuezhi; Burke,Terrence
  3. ACS Infectious Diseases. 2024, Feb 12;
  1. 12.   Viral escape mutations do not account for non-protection from SIVmac239 challenge in RhCMV/SIV vaccinated rhesus macaques
  2. Bimber, Benjamin N; Sunshine, Justine; McElfresh, G W; Reed, Jason S; Pathak, Reese; Bateman, Katherine B; Hughes, Colette M; Gilbride, Roxanne M; Ford, Julia C; Morrow, David; Lifson,Jeffrey; Sacha, Jonah B; Hansen, Scott G; Picker, Louis J
  3. Frontiers in Immunology. 2024 15: 1444621.
  1. 13.   Extraordinary Titer and Broad Anti-SARS-CoV-2 Neutralization Induced by Stabilized RBD Nanoparticles from Strain BA.5
  2. Wang, Zhantong; Zhang, Baoshan; Ou, Li; Qiu, Qi; Wang, Lingshu; Bylund, Tatsiana; Kong, Wing-Pui; Shi, Wei; Tsybovsky,Yaroslav; Wu, Lingyuan; Zhou, Qiong; Chaudhary, Ridhi; Choe, Misook; Dickey, Thayne H; El Anbari, Mohammed; Olia, Adam S; Rawi, Reda; Teng, I-Ting; Wang, Danyi; Wang, Shuishu; Tolia, Niraj H; Zhou, Tongqing; Kwong, Peter D
  3. Vaccines. 2023, Dec 28; 12(1):
  1. 14.   Impact of Surge Strain and Pandemic Progression on Prognostication by an Established COVID-19-Specific Severity Score
  2. Yek, Christina; Wang,Jing; Fintzi, Jonathan; Mancera, Alex G; Keller, Michael B; Warner, Sarah; Kadri, Sameer S
  3. Critical Care Explorations. 2023, Dec; 5(12): e1021.
  1. 15.   Effect of Neutralizing Monoclonal Antibody Treatment on Early Trajectories of Virologic and Immunologic Biomarkers in Patients Hospitalized With COVID-19
  2. Jensen, Tomas O; Grandits, Greg A; Jain, Mamta K; Murray, Thomas A; Grund, Birgit; Shaw-Saliba, Kathryn; Matthay, Michael A; Abassi, Mahsa; Ardelt, Magdalena; Baker, Jason V; Chen, Peter; Dewar, Robin L; Goodman, Anna L; Hatlen, Timothy J; Highbarger, Helene C; Holodniy, Mark; Lallemand, Perrine; Laverdure,Sylvain; Leshnower, Bradley G; Looney, David; Moschopoulos, Charalampos D; Mugerwa, Henry; Murray, Daniel D; Mylonakis, Eleftherios; Nagy-Agren, Stephanie; Rehman, M Tauseef; Rupert, Adam; Stevens, Randy A; Turville, Stuart; Weintrob, Amy; Wick, Katherine; Lundgren, Jens; Ko, Emily R
  3. The Journal of Infectious Diseases. 2023, Nov 09;
  1. 16.   Development of a bicistronic anti-CD19/CD20 CAR construct including abrogation of unexpected nucleic acid sequence deletions
  2. Lam, Norris; Finney, Richard; Yang, Shicheng; Choi, Stephanie; Wu,Xiaolin; Cutmore, Lauren; Andrade, Jorge; Huang, Lei; Amatya, Christina; Cam, Margaret; Kochenderfer, James N
  3. Molecular Therapy Oncolytics. 2023, Sep 21; 30: 132-149.
  1. 17.   Long-acting lenacapavir protects macaques against intravenous challenge with simian-tropic HIV
  2. Swanstrom,Adrienne; Gorelick,Robert; Welker,Jorden; Schmidt, Fabian; Lu, Bing; Wang, Kelly; Rowe, William; Breed,Matthew; Killoran,Kristin; Kramer,Josh; Donohue,Duncan; Roser,James; Bieniasz, Paul D; Hatziioannou, Theodora; Pyle,Cathi; Thomas, James A; Trubey, Charles M; Zheng, Jim; Blair, Wade; Yant, Stephen R; Lifson,Jeffrey; Del Prete,Greg
  3. EBioMedicine. 2023, Aug 23; 95: 104764.
  1. 18.   The capsid lattice engages a bipartite NUP153 motif to mediate nuclear entry of HIV-1 cores
  2. Shen, Qi; Kumari, Sushila; Xu, Chaoyi; Jang, Sooin; Shi, Jiong; Burdick,Ryan; Levintov, Lev; Xiong, Qiancheng; Wu, Chunxiang; Devarkar, Swapnil C; Tian, Taoran; Tripler, Therese N; Hu, Yingxia; Yuan, Shuai; Temple, Joshua; Feng, Qingzhou; Lusk, C Patrick; Aiken, Christopher; Engelman, Alan N; Perilla, Juan R; Pathak,Vinay; Lin, Chenxiang; Xiong, Yong
  3. Proceedings of the National Academy of Sciences of the United States of America. 2023, Mar 28; 120(13): e2202815120.
  1. 19.   Potent monoclonal antibodies neutralize Omicron sublineages and other SARS-CoV-2 variants
  2. Chen, Zhaochun; Zhang, Peng; Matsuoka, Yumiko; Tsybovsky,Yaroslav; West, Kamille; Santos, Celia; Boyd, Lisa F; Nguyen, Hanh; Pomerenke, Anna; Stephens,Tyler; Olia, Adam S; Zhang, Baoshan; De Giorgi, Valeria; Holbrook, Michael R; Gross, Robin; Postnikova, Elena; Garza, Nicole L; Johnson, Reed F; Margulies, David H; Kwong, Peter D; Alter, Harvey J; Buchholz, Ursula J; Lusso, Paolo; Farci, Patrizia
  3. Cell Reports. 2022, Sep 30; 41(5): 111528.
  1. 20.   Concordance of SARS-CoV-2 Antibody Results during a Period of Low Prevalence
  2. Miller, Cheryl N; Althoff, Keri N; Schlueter, David J; Anton-Culver, Hoda; Chen, Qingxia; Garbett, Shawn; Ratsimbazafy, Francis; Thomsen, Isaac; Karlson, Elizabeth W; Cicek, Mine; Pinto,Ligia; Malin, Bradley A; Ohno-Machado, Lucila; Williams, Carolyn; Goldstein, David; Kouame, Aymone; Ramirez, Andrea; Gebo, Kelly A; Schully, Sheri D
  3. mSphere. 2022, Sep 29; e0025722.
  1. 21.   Mapping Retrotransposon LINE-1 Sequences into Two Cebidae Species and Homo sapiens Genomes and a Short Review on Primates
  2. Milioto, Vanessa; Perelman, Polina L; Paglia, Laura La; Biltueva, Larisa; Roelke-Parker,Melody; Dumas, Francesca
  3. Genes. 2022, Sep 27; 13(10):
  1. 22.   Adaptation of HIV-1/HIV-2 Chimeras with Defects in Genome Packaging and Viral Replication
  2. Rawson, Jonathan M O; Nikolaitchik,Olga; Yoo, Jennifer A; Somoulay, Xayathed; Brown, Matthew A; Mbuntcha Bogni, Franck S; Pathak,Vinay; Soheilian,Ferri; Slack, Ryan L; Sarafianos, Stefan G; Hu,Wei-Shau
  3. mBio. 2022, Aug 29; e0222022.
  1. 23.   Scaffolding viral protein NC nucleates phase separation of the HIV-1 biomolecular condensate
  2. Monette, Anne; Niu, Meijuan; Nijhoff Asser, Maya; Gorelick,Robert; Mouland, Andrew J
  3. Cell Reports. 2022, Aug 23; 40(8): 111251.
  1. 24.   Dataset of high-throughput ligand screening against the RNA Packaging Signals regulating Hepatitis B Virus nucleocapsid formation
  2. Abulwerdi, Fardokht; Fatehi, Farzad; Manfield, Iain W; Le Grice,Stuart; Schneekloth,Jay; Twarock, Reidun; Stockley, Peter G; Patel, Nikesh
  3. Data in Brief. 2022, Jun; 42: 108206.
  1. 25.   A Phase II Study of Pembrolizumab in Combination with Capecitabine and Oxaliplatin with Molecular Profiling in Patients with Advanced Biliary Tract Carcinoma
  2. Monge, Cecilia; Pehrsson,Erica; Xie, Changqing; Duffy, Austin G; Mabry, Donna; Wood, Bradford J; Kleiner, David E; Steinberg, Seth M; Figg, William D; Redd, Bernadette; Budhu, Anuradha; Wang, Sophie; Tandon,Mayank; Ma, Lichun; Wei Wang, Xin; Greten, Tim F
  3. The Oncologist. 2022, Mar 11; 27(3): e273-e285.
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