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  1. 1.   Can incorporating genotyping data into efficacy estimators improve efficiency of early phase malaria vaccine trials?
  2. Potter, Gail E; Callier,Viviane; Shrestha, Biraj; Joshi, Sudhaunshu; Dwivedi, Ankit; Silva, Joana C; Laurens, Matthew B; Follmann, Dean A; Deye, Gregory A
  3. Malaria Journal. 2023, Dec 19; 22(1): 383.
  1. 2.   The largest HIV-1-infected T cell clones in children on long-term combination antiretroviral therapy contain solo LTRs
  2. Botha, Johannes C; Demirov,Dimiter; Gordijn, Carli; Katusiime, Mary Grace; Bale, Michael J; Wu,Xiaolin; Wells, Daria; Hughes,Stephen; Cotton, Mark F; Mellors, John W; Kearney, Mary F; van Zyl, Gert U
  3. mBio. 2023, Aug 02; e0111623.
  1. 3.   CRISPR-Cas9 Genome Editing and Rapid Selection of Cell Pools
  2. Stoyko, Daniel; O, Timothy; Hernandez,Adrianna; Konstantinidou, Parthena; Meng, Qingcai; Haase, Astrid D
  3. Current Protocols. 2022, Dec; 2(12): e624.
  1. 4.   Tracking HIV-1-Infected Cell Clones Using Integration Site-Specific qPCR
  2. Brandt, Leah D; Guo,Amber; Joseph, Kevin W; Jacobs, Jana L; Naqvi, Asma; Coffin, John M; Kearney,Mary; Halvas, Elias K; Wu,Xiaolin; Hughes,Stephen; Mellors, John W
  3. Viruses. 2021, Jul; 13(7):
  1. 5.   Comparative Chromosome Mapping of Musk Ox and the X Chromosome among Some Bovidae Species
  2. Proskuryakova, Anastasia A; Kulemzina, Anastasia I; Perelman, Polina L; Yudkin, Dmitry V; Lemskaya, Natalya A; Okhlopkov, Innokentii M; Kirillin, Egor V; Farré, Marta; Larkin, Denis M; Roelke-Parker,Melody; O'Brien, Stephen J; Bush, Mitchell; Graphodatsky, Alexander S
  3. Genes. 2019, Nov; 10(11): pii: E857.
  1. 6.   HIV Infected T Cells Can Proliferate in vivo Without Inducing Expression of the Integrated Provirus
  2. Musick,Andrew; Spindler,Jon; Boritz, Eli; Pérez, Liliana; Crespo-Vélez, Daniel; Patro,Sean; Sobolewski, Michele D; Bale,Michael; Reid, Carolyn; Keele,Brandon; Capoferri, Adam; Shao,Wei; Wiegand,Ann; Simonetti, Francesco R; Mellors, John W; Hughes,Stephen; Coffin, John M; Maldarelli,Frank; Kearney,Mary
  3. Frontiers in microbiology. 2019, OCT 1; 10: 2204.
  1. 7.   Pathogenic Autoreactive T and B Cells Cross-React with Mimotopes Expressed by a Common Human Gut Commensal to Trigger Autoimmunity
  2. Ruff, William E; Dehner, Carina; Kim, Woo J; Pagovich, Odelya; Aguiar, Cassyanne L; Yu, Andrew T; Roth, Alexander S; Vieira, Silvio Manfredo; Kriegel, Christina; Adeniyi, Olamide; Mulla, Melissa J; Abrahams, Vikki M; Kwok, William W; Nussinov,Ruth; Erkan, Doruk; Goodman, Andrew L; Kriegel, Martin A
  3. Cell host & microbe. 2019, Jul 10; 26(1): 100-113.e8.
  1. 8.   HIV evolution and diversity in ART-treated patients
  2. van Zyl, Gert; Bale, Michael; Kearney, Mary
  3. Retrovirology. 2018, Jan 30; 15(1): 14.
  1. 9.   X Chromosome Evolution in Cetartiodactyla
  2. Proskuryakova, Anastasia A; Kulemzina, Anastasia I; Perelman, Polina L; Makunin, Alexey I; Larkin, Denis M; Farré, Marta; Kukekova, Anna V; Lynn Johnson, Jennifer; Lemskaya, Natalya A; Beklemisheva, Violetta R; Roelke-Parker, Melody; Bellizzi, June; Ryder, Oliver A; O'Brien, Stephen J; Graphodatsky, Alexander S
  3. Genes. 2017, Sep; 8(9): pii: E216.
  1. 10.   HIV latency. Specific HIV integration sites are linked to clonal expansion and persistence of infected cells
  2. Maldarelli, F.; Wu, X.; Su, L.; Simonetti, F. R.; Shao, W.; Hill, S.; Spindler, J.; Ferris, A. L.; Mellors, J. W.; Kearney, M. F.; Coffin, J. M.; Hughes, S. H.
  3. Science. 2014, 11-Jul; 345(6193): 179-83.
  1. 11.   Rapid and efficient reprogramming of somatic cells to induced pluripotent stem cells by retinoic acid receptor gamma and liver receptor homolog 1
  2. Wang, W.; Yang, J.; Liu, H.; Lu, D.; Chen, X. F.; Zenonos, Z.; Campos, L. S.; Rad, R.; Guo, G.; Zhang, S. J.; Bradley, A.; Liu, P. T.
  3. Proceedings of the National Academy of Sciences of the United States of America. 2011, Nov; 108(45): 18283-18288.
  1. 12.   FIV diversity: FIV(Ple) subtype composition may influence disease outcome in African lions
  2. Troyer, J. L.; Roelke, M. E.; Jespersen, J. M.; Baggett, N.; Buckley-Beason, V.; MacNulty, D.; Craft, M.; Packer, C.; Pecon-Slattery, J.; O'Brien, S. J.
  3. Veterinary Immunology and Immunopathology. 2011, Oct; 143(3-4): 338-346.
  1. 13.   A Single Polymorphism in HIV-1 Subtype C SP1 Is Sufficient To Confer Natural Resistance to the Maturation Inhibitor Bevirimat
  2. Lu, W. X.; Salzwedel, K.; Wang, D.; Chakravarty, S.; Freed, E. O.; Wild, C. T.; Li, F.
  3. Antimicrobial Agents and Chemotherapy. 2011, Jul; 55(7): 3324-3329.
  1. 14.   Distribution of killer cell immunoglobulin-like receptor genes in the mestizo population from Venezuela
  2. Conesa, A.; Fernandez-Mestre, M.; Padron, D.; Toro, F.; Silva, N.; Tassinari, P.; Blanca, I.; Martin, M. P.; Carrington, M.; Layrisse, Z.
  3. Tissue Antigens. 2010, Jun; 75(6): 724-729.
  1. 15.   Mannose-rich glycosylation patterns on HIV-1 subtype C gp120 and sensitivity to the lectins, Griffithsin, Cyanovirin-N and Scytovirin
  2. Alexandre, K. B.; Gray, E. S.; Lambson, B. E.; Moore, P. L.; Choge, I. A.; Mlisana, K.; Karim, S. S. A.; McMahon, J.; O'Keefe, B.; Chikwamba, R.; Morris, L.
  3. Virology. 2010, Jun; 402(1): 187-196.
  1. 16.   Alterations in Natural Killer Cell Receptor Profiles During HIV Type 1 Disease Progression Among Chronically Infected South African Adults
  2. Wong, A. H. W.; Williams, K.; Reddy, S.; Wilson, D.; Giddy, J.; Alter, G.; Ghebremichael, M.; Carrington, M. N.; Ndung'u, T.; Walker, B. D.; Altfeld, M.; Carr, W. H.
  3. Aids Research and Human Retroviruses. 2010, Apr; 26(4): 459-469.
  1. 17.   Effect of Mutations in the Human Immunodeficiency Virus Type 1 Protease on Cleavage of the gp41 Cytoplasmic Tail
  2. Waheed, A. A.; Ablan, S. D.; Sowder, R. C.; Roser, J. D.; Schaffner, C. P.; Chertova, E.; Freed, E. O.
  3. Journal of Virology. 2010, Mar; 84(6): 3121-3126.
  1. 18.   The completion of the Mammalian Gene Collection (MGC)
  2. Temple, G.; Gerhard, D. S.; Rasooly, R.; Feingold, E. A.; Good, P. J.; Robinson, C.; Mandich, A.; Derge, J. G.; Lewis, J.; Shoaf, D.; Collins, F. S.; Jang, W.; Wagner, L.; Shenmen, C. M.; Misquitta, L.; Schaefer, C. F.; Buetow, K. H.; Bonner, T. I.
  3. Genome Research. 2009, Dec; 19(12): 2324-2333.
  1. 19.   Scaling-up and production of therapeutic antibodies for preclinical studies
  2. Feng, Y.; Dimitrov, D. S.
  3. Methods in molecular biology (Clifton, N.J.). 2009 525: 499-508, xiii.
  1. 20.   Scaleable manufacture of HIV-1 entry inhibitor griffithsin and validation of its safety and efficacy as a topical microbicide component
  2. O'Keefe, B. R.; Vojdani, F.; Buffa, V.; Shattock, R. J.; Montefiori, D. C.; Bakke, J.; Mirsalis, J.; d'Andrea, A. L.; Hume, S. D.; Bratcher, B.; Saucedo, C. J.; McMahon, J. B.; Pogue, G. P.; Palmer, K. E.
  3. Proceedings of the National Academy of Sciences of the United States of America. 2009 106(15): 6099-6104.
  1. 21.   The Mamu B*17-restricted SIV NefIW9 to TW9 mutation abrogates correct epitope processing and presentation without loss of replicative fitness
  2. Minang, J. T.; Trivett, M. T.; Coren, L. V.; Barsov, E. V.; Piatak, M.; Chertov, O.; Chertova, E.; Ott, D. E.; Ohlen, C.
  3. Virology. 2008 375(1): 307-314.
  1. 22.   Inhibition of human immunodeficiency virus type 1 assembly and release by the cholesterol-binding compound amphotericin B methyl ester: Evidence for Vpu dependence
  2. Waheed, A. A.; Ablan, S. D.; Soheilian, F.; Nagashima, K.; Ono, A.; Schaffner, C. P.; Freed, E. O.
  3. Journal of Virology. 2008 82(19): 9776-9781.
  1. 23.   HIV/AIDS: in search of an animal model
  2. Ambrose, Z.; KewalRamani, V. N.; Bieniasz, P. D.; Hatziioannou, T.
  3. Trends in Biotechnology. 2007, Aug; 25(8): 333-337.
  1. 24.   Molecular determinants of HIV-1 intersubtype recombination potential
  2. Chin, M. P. S.; Chen, J. B.; Nikolaitchik, O. A.; Hu, W. S.
  3. Virology. 2007, Jul; 363(2): 437-446.
  1. 25.   Phenotypic and genotypic comparisons of human T-cell leukemia virus type I reverse transcriptases from infected T-cell lines and patient samples
  2. Mitchell, M. S.; Bodine, E. T.; Hill, S.; Princler, G.; Lloyd, P.; Mitsuya, H.; Matsuoka, M.; Derse, D.
  3. Journal of Virology. 2007, May; 81(9): 4422-4428.
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