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  1. 1.   Structural mimicry of CD4 by a cross-reactive HIV-1 neutralizing antibody with CDR-H2 and H3 containing unique motifs
  2. Prabakaran, P.; Gan, J. H.; Wu, Y. Q.; Zhang, M. Y.; Dimitrov, D. S.; Ji, X. H.
  3. Journal of Molecular Biology. 2006, MAR 17; 357(1): 82-99.
  1. 2.   A base-specific recognition signal in the 5 ' consensus sequence of rotavirus plus-strand RNAs promotes replication of the double-stranded RNA genome segments
  2. Tortorici, M. A.; Shapiro, R. A.; Patton, J. T.
  3. Rna-a Publication of the Rna Society. 2006, JAN; 12(1): 133-146.
  1. 3.   Combinatorial docking approach for structure prediction of large proteins and multi-molecular assemblies
  2. Inbar, Y.; Benyamini, H.; Nussinov, R.; Wolfson, H. J.
  3. Physical Biology. 2005, DEC; 2(4, Sp. Iss.): S156-S165.
  1. 4.   Prediction of multimolecular assemblies by multiple docking
  2. Inbar, Y.; Benyamini, H.; Nussinov, R.; Wolfson, H. J.
  3. Journal of Molecular Biology. 2005, JUN 3; 349(2): 435-447.
  1. 5.   Specific interactions between HIV-1 nucleocapsid protein and the TAR element
  2. Kanevsky, I.; Chaminade, F.; Ficheux, D.; Moumen, A.; Gorelick, R.; Negroni, M.; Darlix, J. L.; Fosse, P.
  3. Journal of Molecular Biology. 2005, MAY 20; 348(5): 1059-1077.
  1. 6.   From structure to function: Methods and applications
  2. Wolfson, H. J.; Shatsky, M.; Schneidman-Duhovny, D.; Dror, O.; Shulman-Peleg, A.; Ma, B. Y.; Nussinov, R.
  3. Current Protein & Peptide Science. 2005, APR; 6(2): 171-183.
  1. 7.   siRNA, miRNA and HIV: promises and challenges
  2. Yeung, M. L.; Bennasser, Y.; Le, S. Y.; Jeang, K. T.
  3. Cell Research. 2005, NOV-DEC; 15(11-12): 935-946.
  1. 8.   Multiple docking for protein structure prediction
  2. Inbar, Y.; Wolfson, H. J.; Nussinov, R.
  3. International Journal of Robotics Research. 2005, FEB-MAR; 24(2-3): 131-150.
  1. 9.   Favorable scaffolds: proteins with different sequence, structure and function may associate in similar ways
  2. Keskin, O.; Nussinov, R.
  3. Protein Engineering Design & Selection. 2005, JAN; 18(1): 11-24.
  1. 10.   Protein-protein interactions: Structurally conserved residues distinguish between binding sites and exposed protein surfaces
  2. Ma, B. Y.; Elkayam, T.; Wolfson, H.; Nussinov, R.
  3. Proceedings of the National Academy of Sciences of the United States of America. 2003 100(10): 5772-5777.
  1. 11.   Taking geometry to its edge: Fast unbound rigid (and hinge- bent) docking
  2. Schneidman-Duhovny, D.; Inbar, Y.; Polak, V.; Shatsky, M.; Halperin, I.; Benyamini, H.; Barzilai, A.; Dror, O.; Haspel, N.; Nussinov, R.; Wolfson, H. J.
  3. Proteins-Structure Function and Genetics. 2003 52(1): 107-112.
  1. 12.   beta(2)-microglobulin amyloidosis: Insights from conservation analysis and fibril modelling by protein docking techniques
  2. Benyamini, H.; Gunasekaran, K.; Wolfson, H.; Nussinov, R.
  3. Journal of Molecular Biology. 2003 330(1): 159-174.
  1. 13.   Recombinant antibodies for the diagnosis and treatment of cancer
  2. Krauss, J.
  3. Molecular Biotechnology. 2003 25(1): 1-17.
  1. 14.   Efficient unbound docking of rigid molecules
  2. Duhovny, D.; Nussinov, R.; Wolfson, H. J.
  3. Algorithms in Bioinformatics, Proceedings. 2002; 2452 : 185-200.
  1. 15.   Principles of docking: An overview of search algorithms and a guide to scoring functions
  2. Halperin, I.; Ma, B. Y.; Wolfson, H.; Nussinov, R.
  3. Proteins-Structure Function and Genetics. 2002 47(4): 409-443.
  1. 16.   Conservation of polar residues as hot spots at protein interfaces
  2. Hu, Z. J.; Ma, B. Y.; Wolfson, H.; Nussinov, R.
  3. Proteins: Structure, Function, & Genetics. 2000 39(4): 331-342.
  1. 17.   Examination of shape complementarity in docking of unbound proteins
  2. Norel, R.; Petrey, D.; Wolfson, H. J.; Nussinov, R.
  3. Proteins. 1999 36(3): 307-317.
  1. 18.   Efficient computational algorithms for docking and for generating and matching a library of functional epitopes - II. Computer vision-based techniques for the generation and utilization of functional epitopes
  2. Nussinov, R.; Wolfson, H. J.
  3. Combinatorial Chemistry & High Throughput Screening. 1999 2(5): 261-269.
  1. 19.   Efficient computational algorithms for docking and for generating and matching a library of functional epitopes - I. Rigid and flexible hinge-bending docking algorithms
  2. Nussinov, R.; Wolfson, H. J.
  3. Combinatorial Chemistry & High Throughput Screening. 1999 2(5): 249-259.
  1. 20.   Molecular Shape Comparisons in Searches For Active Sites and Functional Similarity
  2. Rosen, M.; Lin, S. L.; Wolfson, H.; Nussinov, R.
  3. Protein Engineering. 1998 11(4): 263-277.
  1. 21.   A Set of Van Der Waals and Coulombic Radii of Protein Atoms For Molecular and Solvent-Accessible Surface Calculation, Packing Evaluation, and Docking
  2. Li, A. J.; Nussinov, R.
  3. Proteins. 1998 32(1): 111-127.
  1. 22.   Studies of Protein-Protein Interfaces - a Statistical Analysis of the Hydrophobic Effect
  2. Tsai, C. J.; Lin, S. L.; Wolfson, H. J.; Nussinov, R.
  3. Protein Science. 1997 6(1): 53-64.
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