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  1. 1.   A Bifunctional Phosphoglucomutase/Phosphomannomutase from Thermococcus kodakarensis: Biophysical Analysis and Cryo-EM Structure
  2. Naz, Zahra; Rathore, Ishan; Saleem, Muhammad; Rahman, Moazur; Wlodawer,Alexander; Rashid, Naeem
  3. Biomolecules. 2025, Feb 21; 15(3):
  1. 2.   Potent and broad HIV-1 neutralization in fusion peptide-primed SHIV-infected macaques
  2. Wang, Hua; Cheng, Cheng; Dal Santo, James L; Shen, Chen-Hsiang; Bylund, Tatsiana; Henry, Amy R; Howe, Colin A; Hwang, Juyun; Morano, Nicholas C; Morris, Daniel J; Pletnev, Sergei; Roark, Ryan S; Zhou, Tongqing; Hansen, Bryan T; Hoyt, Forrest H; Johnston, Timothy S; Wang, Shuyi; Zhang, Baoshan; Ambrozak, David R; Becker, Jordan E; Bender, Michael F; Changela, Anita; Chaudhary, Ridhi; Corcoran, Martin; Corrigan, Angela R; Foulds, Kathryn E; Guo, Yicheng; Lee, Myungjin; Li, Yingying; Lin, Bob C; Liu, Tracy; Louder, Mark K; Mandolesi, Marco; Mason, Rosemarie D; McKee, Krisha; Nair, Vinod; O'Dell, Sijy; Olia, Adam S; Ou, Li; Pegu, Amarendra; Raju, Nagarajan; Rawi, Reda; Roberts-Torres, Jesmine; Sarfo, Edward K; Sastry, Mallika; Schaub, Andrew J; Schmidt, Stephen D; Schramm, Chaim A; Schwartz, Cindi L; Smith, Sarah C; Stephens,Tyler; Stuckey, Jonathan; Teng, I-Ting; Todd, John-Paul; Tsybovsky,Yaroslav; Van Wazer, David J; Wang, Shuishu; Doria-Rose, Nicole A; Fischer, Elizabeth R; Georgiev, Ivelin S; Karlsson Hedestam, Gunilla B; Sheng, Zizhang; Woodward, Ruth A; Douek, Daniel C; Koup, Richard A; Pierson, Theodore C; Shapiro, Lawrence; Shaw, George M; Mascola, John R; Kwong, Peter D
  3. Cell. 2024, Oct 23;
  1. 3.   Design of soluble HIV-1 envelope trimers free of covalent gp120-gp41 bonds with prevalent native-like conformation
  2. Zhang, Peng; Gorman, Jason; Tsybovsky,Yaroslav; Lu, Maolin; Liu, Qingbo; Gopan, Vinay; Singh, Mamta; Lin, Yin; Miao, Huiyi; Seo, Yuna; Kwon, Alice; Olia, Adam S; Chuang, Gwo-Yu; Geng, Hui; Lai, Yen-Ting; Zhou, Tongqing; Mascola, John R; Mothes, Walther; Kwong, Peter D; Lusso, Paolo
  3. Cell Reports. 2024, Jul 18; 43(8): 114518.
  1. 4.   Protective human monoclonal antibodies target conserved sites of vulnerability on the underside of influenza virus neuraminidase
  2. Lederhofer, Julia; Tsybovsky,Yaroslav; Nguyen, Lam; Raab, Julie E; Creanga, Adrian; Stephens,Tyler; Gillespie, Rebecca A; Syeda, Hubza Z; Fisher, Brian E; Skertic, Michelle; Yap, Christina; Schaub, Andrew J; Rawi, Reda; Kwong, Peter D; Graham, Barney S; McDermott, Adrian B; Andrews, Sarah F; King, Neil P; Kanekiyo, Masaru
  3. Immunity. 2024, Mar 12; 57(3): 574-586.e7.
  1. 5.   HIV-1 neutralizing antibodies elicited in humans by a prefusion-stabilized envelope trimer form a reproducible class targeting fusion peptide
  2. Wang, Shuishu; Matassoli, Flavio; Zhang, Baoshan; Liu, Tracy; Shen, Chen-Hsiang; Bylund, Tatsiana; Johnston, Timothy; Henry, Amy R; Teng, I-Ting; Tripathi, Prabhanshu; Becker, Jordan E; Changela, Anita; Chaudhary, Ridhi; Cheng, Cheng; Gaudinski, Martin; Gorman, Jason; Harris, Darcy R; Lee, Myungjin; Morano, Nicholas C; Novik, Laura; O'Dell, Sijy; Olia, Adam S; Parchment, Danealle K; Rawi, Reda; Roberts-Torres, Jesmine; Stephens,Tyler; Tsybovsky,Yaroslav; Wang, Danyi; Van Wazer, David J; Zhou, Tongqing; Doria-Rose, Nicole A; Koup, Richard A; Shapiro, Lawrence; Douek, Daniel C; McDermott, Adrian B; Kwong, Peter D
  3. Cell Reports. 2023, Jul 10; 42(7): 112755.
  1. 6.   Vaccine elicitation and structural basis for antibody protection against alphaviruses
  2. Sutton, Matthew S; Pletnev, Sergei; Callahan, Victoria; Ko, Sungyoul; Tsybovsky,Yaroslav; Bylund, Tatsiana; Casner, Ryan G; Cerutti, Gabriele; Gardner, Christina L; Guirguis, Veronica; Verardi, Raffaello; Zhang, Baoshan; Ambrozak, David; Beddall, Margaret; Lei, Hong; Yang, Eun Sung; Liu, Tracy; Henry, Amy R; Rawi, Reda; Schön, Arne; Schramm, Chaim A; Shen, Chen-Hsiang; Shi, Wei; Stephens,Tyler; Yang, Yongping; Florez, Maria Burgos; Ledgerwood, Julie E; Burke, Crystal W; Shapiro, Lawrence; Fox, Julie M; Kwong, Peter D; Roederer, Mario
  3. Cell. 2023, Jun 08; 186(12): 2672-2689.e25.
  1. 7.   Diverse Murine Vaccinations Reveal Distinct Antibody Classes to Target Fusion Peptide and Variation in Peptide Length to Improve HIV Neutralization
  2. Sastry, Mallika; Changela, Anita; Gorman, Jason; Xu, Kai; Chuang, Gwo-Yu; Shen, Chen-Hsiang; Cheng, Cheng; Geng, Hui; O'Dell, Sijy; Ou, Li; Rawi, Reda; Reveiz, Mateo; Stewart-Jones, Guillaume B E; Wang, Shuishu; Zhang, Baoshan; Zhou, Tongqing; Biju, Andrea; Chambers, Michael; Chen, Xuejun; Corrigan, Angela R; Lin, Bob C; Louder, Mark K; McKee, Krisha; Nazzari, Alexandra F; Olia, Adam S; Parchment, Danealle K; Sarfo, Edward K; Stephens,Tyler; Stuckey, Jonathan; Tsybovsky,Yaroslav; Verardi, Raffaello; Wang, Yiran; Zheng, Cheng-Yan; Chen, Yuling; Doria-Rose, Nicole A; McDermott, Adrian B; Mascola, John R; Kwong, Peter D
  3. Journal of Virology. 2023, Apr 26; e0160422.
  1. 8.   SARS-CoV-2 polyprotein substrate regulates the stepwise Mpro cleavage reaction
  2. Narwal, Manju; Armache, Jean-Paul; Edwards,Thomas; Murakami, Katsuhiko S
  3. The Journal of Biological Chemistry. 2023, Apr 10; 299(5): 104697.
  1. 9.   Destabilizing NF1 variants act in a dominant negative manner through neurofibromin dimerization
  2. Young, Lucy C; Goldstein de Salazar, Ruby; Han, Sae-Won; Huang, Zi Yi Stephanie; Merk,Alan; Drew,Matt; Darling, Joseph; Wall,Vanessa; Grisshammer, Reinhard; Cheng, Alice; Allison, Madeline R; Sale, Matthew J; Nissley,Dwight; Esposito,Dom; Ognjenovic, Jana; McCormick, Frank
  3. Proceedings of the National Academy of Sciences of the United States of America. 2023, Jan 31; 120(5): e2208960120.
  1. 10.   Three-Dimensional Reconstruction of the Hepatitis C Virus Envelope Glycoprotein E1E2 Heterodimer by Electron Microscopic Analysis
  2. Kanai,Tapan; Hu, Zongyi; Yang,Renbin; Wu, Weimin; Wang, Ziqiu; Ma, Christopher D; Sanchez-Meza, Jaime; Law, Mansun; Houghton, Michael; Law, John Lokman; Logan, Michael; de Val, Natalia; Liang, T Jake
  3. Journal of Virology. 2022, Dec 15; e0178822.
  1. 11.   Direct epitranscriptomic regulation of mammalian translation initiation through N4-acetylcytidine
  2. Arango, Daniel; Sturgill, David; Yang,Renbin; Kanai,Tapan; Bauer, Paulina; Roy, Jyoti; Wang, Ziqiu; Hosogane, Masaki; Schiffers, Sarah; Oberdoerffer, Shalini
  3. Molecular Cell. 2022, Jun 07;
  1. 12.   Dromedary camel nanobodies broadly neutralize SARS-CoV-2 variants
  2. Hong, Jessica; Kwon, Hyung Joon; Cachau,Raul; Chen, Catherine Z; Butay, Kevin John; Duan, Zhijian; Li, Dan; Ren, Hua; Liang, Tianyuzhou; Zhu,Jianghai; Dandey, Venkata P; Martin, Negin P; Esposito,Dom; Ortega-Rodriguez, Uriel; Xu, Miao; Borgnia, Mario J; Xie, Hang; Ho, Mitchell
  3. Proceedings of the National Academy of Sciences of the United States of America. 2022, May 03; 119(18): e2201433119.
  1. 13.   Structural Studies Reveal the Role of Helix 68 in the Elongation Step of Protein Biosynthesis
  2. Cimicata, Giuseppe; Fridkin, Gil; Bose, Tanaya; Eyal, Zohar; Halfon, Yehuda; Breiner-Goldstein, Elinor; Fox,Tara; Zimmerman, Ella; Bashan, Anat; de Val, Natalia; Wlodawer,Alexander; Yonath, Ada
  3. mBio. 2022, Mar 29; 13(2): e0030622.
  1. 14.   Asymmetric and non-stoichiometric glycoprotein recognition by two distinct antibodies results in broad protection against ebolaviruses
  2. Milligan, Jacob C; Davis, Carl W; Yu, Xiaoying; Ilinykh, Philipp A; Huang, Kai; Halfmann, Peter J; Cross, Robert W; Borisevich, Viktoriya; Agans, Krystle N; Geisbert, Joan B; Chennareddy, Chakravarthy; Goff, Arthur J; Piper, Ashley E; Hui, Sean; Shaffer, Kelly C L; Buck, Tierra; Heinrich, Megan L; Branco, Luis M; Crozier,Ian; Holbrook, Michael R; Kuhn, Jens H; Kawaoka, Yoshihiro; Glass, Pamela J; Bukreyev, Alexander; Geisbert, Thomas W; Worwa, Gabriella; Ahmed, Rafi; Saphire, Erica Ollmann
  3. Cell. 2022, Mar 17; 185(6): 995-1007.e18.
  1. 15.   SARS-CoV-2 ferritin nanoparticle vaccines elicit broad SARS coronavirus immunogenicity
  2. Joyce, M. Gordon; Chen, Wei-Hung; Sankhala, Rajeshwer S.; Hajduczki, Agnes; Thomas, Paul; Choe, Misook; Martinez, Elizabeth J.; Chang, William C.; Peterson, Caroline E.; Morrison, Elaine B.; Smith,Clayton; Chen, Rita E.; Ahmed, Aslaa; Wieczorek, Lindsay; Anderson, Alexander; Case, James Brett; Li, Yifan; Oertel, Therese; Rosado, Lorean; Ganesh, Akshaya; Whalen, Connor; Carmen, Joshua M.; Mendez-Rivera, Letzibeth; Karch, Christopher P.; Gohain, Neelakshi; Villar, Zuzana; McCurdy, David; Beck, Zoltan; Kim, Jiae; Shrivastava, Shikha; Jobe, Ousman; Dussupt, Vincent; Molnar, Sebastian; Tran, Ursula; Kannadka, Chandrika B.; Soman, Sandrine; Kuklis, Caitlin; Zemil, Michelle; Khanh, Htet; Wu,Weimin; Cole, Matthew A.; Duso, Debra K.; Kummer, Larry W.; Lang, Tricia J.; Muncil, Shania E.; Currier, Jeffrey R.; Krebs, Shelly J.; Polonis, Victoria R.; Rajan, Saravanan; McTamney, Patrick M.; Esser, Mark T.; Reiley, William W.; Rolland, Morgane; de Val, Natalia; Diamond, Michael S.; Gromowski, Gregory D.; Matyas, Gary R.; Rao, Mangala; Michael, Nelson L.; Modjarrad, Kayvon
  3. CELL REPORTS. 2021, DEC 21; 37(12):
  1. 16.   Molecular basis for redox control by the human cystine/glutamate antiporter system xc(-)
  2. Parker, Joanne L.; Deme,Justin; Kolokouris, Dimitrios; Kuteyi, Gabriel; Biggin, Philip C.; Lea,Susan; Newstead, Simon
  3. Nature Communications. 2021, Dec 8; 12(1):
  1. 17.   Huntingtin structure is orchestrated by HAP40 and shows a polyglutamine expansion-specific interaction with exon 1
  2. Harding, Rachel J.; Deme,Justin; Hevler, Johannes F.; Tamara, Sem; Lemak, Alexander; Cantle, Jeffrey P.; Szewczyk, Magdalena M.; Begeja, Nola; Goss, Siobhan; Zuo, Xiaobing; Loppnau, Peter; Seitova, Alma; Hutchinson, Ashley; Fan,Lixin; Truant, Ray; Schapira, Matthieu; Carroll, Jeffrey B.; Heck, Albert J. R.; Lea, Susan M.; Arrowsmith, Cheryl H.
  3. Communications Biology . 2021, Dec 8; 4(1):
  1. 18.   Cryo-EM structure and resistance landscape of M. tuberculosis MmpL3: An emergent therapeutic target
  2. Adams, Oliver; Deme,Justin; Parker, Joanne L; Fowler, Philip W; Lea,Susan; Newstead, Simon
  3. Structure (London, England : 1993). 2021, Oct 7; 29(10): 1182-1191.
  1. 19.   Paired heavy- and light-chain signatures contribute to potent SARS-CoV-2 neutralization in public antibody responses
  2. Banach, Bailey B.; Cerutti, Gabriele; Fahad, Ahmed S.; Shen, Chen-Hsiang; De Souza, Matheus Oliveira; Katsamba, Phinikoula S.; Tsybovsky, Yaroslav; Wang, Pengfei; Nair, Manoj S.; Huang, Yaoxing; Francino-Urdaniz, Irene M.; Steiner, Paul J.; Gutierrez-Gonzalez, Matias; Liu, Lihong; Acevedo, Sheila N. Lopez; Nazzari, Alexandra F.; Wolfe, Jacy R.; Luo, Yang; Olia, Adam S.; Teng, I-Ting; Yu, Jian; Zhou, Tongqing; Reddem, Eswar R.; Bimela, Jude; Pan, Xiaoli; Madan, Bharat; Laflin, Amy D.; Nimrania, Rajani; Yuen, Kwok-Yung; Whitehead, Timothy A.; Ho, David D.; Kwong, Peter D.; Shapiro, Lawrence; DeKosky, Brandon J.
  3. Cell Reports. 2021, Oct 5; 37(1):
  1. 20.   SARS-CoV-2 S2P spike ages through distinct states with altered immunogenicity
  2. Olia, Adam S.; Tsybovsky,Yaroslav; Chen, Steven J.; Liu, Cuiping; Nazzari, Alexandra F.; Ou, Li; Wang, Lingshu; Kong, Wing-Pui; Leung, Kwan; Liu, Tracy; Stephens,Tyler; Teng, I-Ting; Wang, Shuishu; Yang, Eun Sung; Zhang, Baoshan; Zhang, Yi; Zhou, Tongqing; Mascola, John R.; Kwong, Peter D.
  3. The Journal of biological chemistry. 2021, Oct; 297(4):
  1. 21.   SARS-CoV-2: from its discovery to genome structure, transcription, and replication
  2. Castro Brant,Ayslan; Tian, Wei; Majerciak,Vladimir; Yang, Wei; Zheng,Zhi-Ming
  3. Cell & bioscience. 2021, Jul 19; 11(1):
  1. 22.   Structural basis of antifolate recognition and transport by PCFT
  2. Parker, Joanne L.; Deme,Justin; Kuteyi, Gabriel; Wu, Zhiyi; Huo, Jiandong; Goldman, I. David; Owens, Raymond J.; Biggin, Philip C.; Lea,Susan; Newstead, Simon
  3. Nature. 2021, Jul; 595(7865): 130-134.
  1. 23.   Nonameric structures of the cytoplasmic domain of FlhA and SctV in the context of the full-length protein
  2. Kuhlen, Lucas; Johnson,Steven; Cao, Jerry; Deme,Justin; Lea,Susan
  3. PLOS ONE. 2021, Jun 18; 16(6):
  1. 24.   Molecular structure of the intact bacterial flagellar basal body
  2. Johnson, Steven; Furlong, Emily J.; Deme,Justin; Nord, Ashley L.; Caesar, Joseph J. E.; Chevance, Fabienne F. V.; Berry, Richard M.; Hughes, Kelly T.; Lea,Susan
  3. Nature Microbiology. 2021, Apr 30; 6(6): 712-721.
  1. 25.   An optimized protocol for acquiring and processing cryo-EM data of human 26S proteasome with M1-Ub6
  2. Chen,Xiang; Shi,Dan; Zhang,Ping; Walters,Kylie
  3. STAR protocols. 2021, Mar 19; 2(1): 100278.
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