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  1. 1.   Genome-scale exon perturbation screens uncover exons critical for cell fitness
  2. Xiao,Meisheng; Damodaran,Arun Prasath; Kumari,Bandana; Dickson, Ethan; Xing, Kun; On, Tyler A; Parab, Nikhil; King, Helen E; Perez, Alexendar R; Guiblet,Wilfried; Duncan,Gerard; Che,Anney; Chari,Raj; Andresson,Thorkell; Vidigal, Joana A; Weatheritt, Robert J; Aregger,Michael; Gonatopoulos Pournatzis,Thomas
  3. Molecular Cell. 2024, Jul 11; 84(13): 2553-2572.
  1. 2.   Development of a bicistronic anti-CD19/CD20 CAR construct including abrogation of unexpected nucleic acid sequence deletions
  2. Lam, Norris; Finney, Richard; Yang, Shicheng; Choi, Stephanie; Wu,Xiaolin; Cutmore, Lauren; Andrade, Jorge; Huang, Lei; Amatya, Christina; Cam, Margaret; Kochenderfer, James N
  3. Molecular Therapy Oncolytics. 2023, Sep 21; 30: 132-149.
  1. 3.   Detecting genomic deletions from high-throughput sequence data with unsupervised learning
  2. Li,Xin; Wu, Yufeng
  3. BMC Bioinformatics. 2023, Jan 27; 23(Suppl 8): 568.
  1. 4.   Pathogenic germline IKZF1 variant alters hematopoietic gene expression profiles
  2. Brodie,Seth; Khincha, Payal P.; Giri, Neelam; Bouk,Aaron; Steinberg,Mia; Dai,Jieqiong; Jessop, Lea; Donovan, Frank X.; Chandrasekharappa, Settara C.; de Andrade, Kelvin C.; Maric, Irina; Ellis, Steven R.; Mirabello, Lisa; Alter, Blanche P.; Savage, Sharon A.
  3. COLD SPRING HARBOR MOLECULAR CASE STUDIES. 2021, AUG; 7(4):
  1. 5.   A study of transposable element-associated structural variations (TASVs) using a de novo-assembled Korean genome
  2. Mun, Seyoung; Kim, Songmi; Lee, Wooseok; Kang, Keunsoo; Meyer,Thomas; Han, Bok-Ghee; Han, Kyudong; Kim, Heui-Soo
  3. Experimental and Molecular Medicine. 2021, Apr; 53(4): 615-630.
  1. 6.   Comprehensive characterization of Alu-mediated breakpoints in germline VHL gene deletions and rearrangements in patients from 71 VHL families
  2. Vocke, Cathy D.; Ricketts, Christopher J.; Schmidt,Laura; Ball, Mark W.; Middelton, Lindsay A.; Zbar, Berton; Linehan, W. Marston
  3. Human Mutation. 2021, Mar 06; 42(5): 520-529.
  1. 7.   Pre-HCT mosaicism increases relapse risk and lowers survival in acute lymphoblastic leukemia patients post-unrelated HCT
  2. Wang, Yiwen; Zhou,Weiyin; Wang, Junke; Karaesmen, Ezgi; Tang, Hancong; McCarthy, Philip L.; Pasquini, Marcelo C.; Wang, Youjin; McReynolds, Lisa J.; Katki, Hormuzd A.; Machiela, Mitchell J.; Yeager,Meredith; Pooler, Loreall; Sheng, Xin; Haiman, Christopher A.; Van den Berg, David; Spellman, Stephen R.; Wang, Tao; Kuxhausen, Michelle; Chanock, Stephen J.; Lee, Stephanie J.; Clay-Gilmour, Alyssa; Hahn, Theresa E.; Gadalla, Shahinaz M.; Sucheston-Campbell, Lara E.
  3. Blood Advances. 2021, Jan 12; 5(1): 66-70.
  1. 8.   High throughput assessment of biomarkers in tissue microarrays using artificial intelligence: PTEN loss as a proof-of-principle in multi-center prostate cancer cohorts
  2. Harmon,Stephanie; Patel, Palak G; Sanford, Thomas H; Caven, Isabelle; Iseman, Rachael; Vidotto, Thiago; Picanço, Clarissa; Squire, Jeremy A; Masoudi, Samira; Mehralivand, Sherif; Choyke, Peter L; Berman, David M; Turkbey, Baris; Jamaspishvili, Tamara
  3. Modern pathology : an official journal of the United States and Canadian Academy of Pathology, Inc. 2020, Sep 03;
  1. 9.   The genomic and epigenomic evolutionary history of papillary renal cell carcinomas
  2. Zhu, Bin; Poeta, Maria Luana; Costantini, Manuela; Zhang, Tongwu; Shi, Jianxin; Sentinelli, Steno; Zhao, Wei; Pompeo, Vincenzo; Cardelli, Maurizio; Alexandrov, Boian S; Otlu, Burcak; Hua, Xing; Jones,Kristine; Brodie,Seth; Dabrowska, Malgorzata Ewa; Toro, Jorge R; Yeager,Meredith; Wang,Mingyi; Hicks,Belynda; Alexandrov, Ludmil B; Brown, Kevin M; Wedge, David C; Chanock, Stephen; Fazio, Vito Michele; Gallucci, Michele; Landi, Maria Teresa
  3. Nature communications. 2020, Jun 18; 11(1): 3096.
  1. 10.   Immune gene expression profiling reveals heterogeneity in luminal breast tumors
  2. Zhu, Bin; Tse, Lap Ah; Wang,Difei; Koka, Hela; Zhang, Tongwu; Abubakar, Mustapha; Lee, Priscilla; Wang, Feng; Wu, Cherry; Tsang, Koon Ho; Chan, Wing-Cheong; Law, Sze Hong; Li, Mengjie; Li, Wentao; Wu, Suyang; Liu, Zhiguang; Huang, Bixia; Zhang, Han; Tang, Eric; Kan, Zhengyan; Lee, Soohyeon; Park, Yeon Hee; Nam, Seok Jin; Wang, Mingyi; Sun, Xuezheng; Jones, Kristine; Zhu,Bin; Hutchinson,Amy; Hicks,Belynda; Prokunina-Olsson, Ludmila; Shi, Jianxin; Garcia-Closas, Montserrat; Chanock, Stephen; Yang, Xiaohong R
  3. Breast cancer research : BCR. 2019, Dec 19; 21(1): 147.
  1. 11.   Wdr13 and streptozotocin-induced diabetes
  2. Mishra, Arun; Yedella, Komala; Lakshmi, Jyothi B.; Siva, Archana B.
  3. NUTRITION & DIABETES. 2018, Oct 29; 8(1): 57.
  1. 12.   Identification of Intragenic Deletions and Duplication in the FLCN Gene in Birt-Hogg-Dube Syndrome
  2. Benhammou, J. N. B. J. N.; Vocke, C. D.; Santani, A.; Schmidt, L. S.; Baba, M.; Seyama, K.; Wu, X. L.; Korolevich, S.; Nathanson, K. L.; Stolle, C. A.; Linehan, W. M.
  3. Genes Chromosomes & Cancer. 2011, Jun; 50(6): 466-477.
  1. 13.   Delineation of the Preferences and Requirements of the Human Immunodeficiency Virus Type 1 Dimerization Initiation Signal by Using an In Vivo Cell-Based Selection Approach
  2. Hussein, I. T. M.; Ni, N.; Galli, A.; Chen, J. B.; Moore, M. D.; Hu, W. S.
  3. Journal of Virology. 2010, Jul; 84(13): 6866-6875.
  1. 14.   Light whole genome sequence for SNP discovery across domestic cat breeds
  2. Mullikin, J. C.; Hansen, N. F.; Shen, L.; Ebling, H.; Donahue, W. F.; Tao, W.; Saranga, D. J.; Brand, A; Rubenfield, M. J.; Young, A. C.; Cruz, P.; Driscoll, C.; David, V.; Al-Murrani, S. W. K.; Locniskar, M. F.; Abrahamsen, M. S.; O'Brien, S. J.; Smith, D. R.; Brockman, J. A.; Progra, N. C. S.
  3. Bmc Genomics. 2010, Jun; 11: 8.
  1. 15.   Simultaneous down-regulation of tumor suppressor genes RBSP3/CTDSPL, NPRL2/G21 and RASSF1A in primary non-small cell lung cancer
  2. Senchenko, V. N.; Anedchenko, E. A.; Kondratieva, T. T.; Krasnov, G. S.; Dmitriev, A. A.; Zabarovska, V. I.; Pavlova, T. V.; Kashuba, V. I.; Lerman, M. I.; Zabarovsky, E. R.
  3. Bmc Cancer. 2010, Mar; 10: 13.
  1. 16.   Sequences required for transcription termination at the intrinsic lambda tI terminator
  2. Martinez-Trujillo, M.; Sanchez-Trujillo, A.; Ceja, V.; Avila-Moreno, F.; Bermudez-Cruz, R. M.; Court, D.; Montanez, C.
  3. Canadian Journal of Microbiology. 2010, Feb; 56(2): 168-177.
  1. 17.   Multistage Genomewide Association Study Identifies a Locus at 1q41 Associated with Rate of HIV-1 Disease Progression to Clinical AIDS
  2. Herbeck, J. T.; Gottlieb, G. S.; Winkler, C. A.; Nelson, G. W.; An, P.; Maust, B. S.; Wong, K. G.; Troyer, J. L.; Goedert, J. J.; Kessing, B. D.; Detels, R.; Wolinsky, S. M.; Martinson, J.; Buchbinder, S.; Kirk, G. D.; Jacobson, L. P.; Margolick, J. B.; Kaslow, R. A.; O'Brien, S. J.; Mullins, J. I.
  3. Journal of Infectious Diseases. 2010, Feb; 201(4): 618-626.
  1. 18.   MouseIndelDB: a database integrating genomic indel polymorphisms that distinguish mouse strains
  2. Akagi, K.; Stephens, R. M.; Li, J. F.; Evdokimov, E.; Kuehn, M. R.; Volfovsky, N.; Symer, D. E.
  3. Nucleic Acids Research. 2010, Jan; 38(Database issue): D600-D606.
  1. 19.   Endogenous Truncated TrkB.T1 Receptor Regulates Neuronal Complexity and TrkB Kinase Receptor Function In Vivo
  2. Carim-Todd, L.; Bath, K. G.; Fulgenzi, G.; Yanpallewar, S.; Jing, D. Q.; Barrick, C. A.; Becker, J.; Buckley, H.; Dorsey, S. G.; Lee, F. S.; Tessarollo, L.
  3. Journal of Neuroscience. 2009, Jan 21; 29(3): 678-685.
  1. 20.   Wnt2/2b and beta-Catenin Signaling Are Necessary and Sufficient to Specify Lung Progenitors in the Foregut
  2. Goss, A. M.; Tian, Y.; Tsukiyama, T.; Cohen, E. D.; Zhou, D.; Lu, M. M.; Yamaguchi, T. P.; Morrisey, E. E.
  3. Developmental Cell. 2009 17(2): 290-298.
  1. 21.   An autosomal genetic linkage map of the domestic cat, Felis silvestris catus
  2. Menotti-Raymond, M.; David, V. A.; Schaffer, A. A.; Tomlin, J. F.; Eizirik, E.; Phillip, C.; Wells, D.; Pontius, J. U.; Hannah, S. S.; O'Brien, S. J.
  3. Genomics. 2009 93(4): 305-313.
  1. 22.   Artifacts of the 1.9x Feline Genome Assembly Derived from the Feline-Specific Satellite Sequence
  2. Pontius, J. U.; O'Brien, S. J.
  3. Journal of Heredity. 2009 100: S14-S18.
  1. 23.   Melanoma Progression Despite Infiltration by In Vivo-primed TRP-2-specific T Cells
  2. Singh, V.; Ji, Q. Y.; Feigenbaum, L.; Leighty, R. M.; Hurwitz, A. A.
  3. Journal of Immunotherapy. 2009 32(2): 129-139.
  1. 24.   HYAL1 and HYAL2 Inhibit Tumour Growth In Vivo but Not In Vitro
  2. Wang, F. L.; Grigorieva, E. V.; Li, J. F.; Senchenko, V. N.; Pavlova, T. V.; Anedchenko, E. A.; Kudryavtseva, A. V.; Tsimanis, A.; Angeloni, D.; Lerman, M. I.; Kashuba, V. I.; Klein, G.; Zabarovsky, E. R.
  3. Plos One. 2008, Aug; 3(8): 8.
  1. 25.   Inactivation of the mouse Magel2 gene results in growth abnormalities similar to Prader-Willi syndrome
  2. Bischof, J. M.; Stewart, C. L.; Wevrick, R.
  3. Human Molecular Genetics. 2007, Nov; 16(22): 2713-2719.
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