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  1. 1.   Distinct allosteric networks in CDK4 and CDK6 in the cell cycle and in drug resistance
  2. Zhang,Wengang; Bradburn, Devin; Heidebrink, Gretchen; Liu, Yonglan; Jang,Hyunbum; Nussinov,Ruth; Kõivomägi, Mardo
  3. Journal of Molecular Biology. 2025, Mar 31; 169121.
  1. 2.   Solvent organization in the ultrahigh-resolution crystal structure of crambin at room temperature
  2. Chen, Julian C H; Gilski, Miroslaw; Chang, Changsoo; Borek, Dominika; Rosenbaum, Gerd; Lavens, Alex; Otwinowski, Zbyszek; Kubicki, Maciej; Dauter, Zbigniew; Jaskolski, Mariusz; Joachimiak, Andrzej
  3. IUCrJ. 2024, Sep 01; 11(Pt 5): 649-663.
  1. 3.   Longitudinal analysis of the lung proteome reveals persistent repair months after mild to moderate COVID-19
  2. Kanth, Shreya M; Huapaya, Julio A; Gairhe, Salina; Wang, Honghui; Tian, Xin; Demirkale, Cumhur Y; Hou, Chunyan; Ma, Junfeng; Kuhns,Doug; Fink,Dani; Malayeri, Ashkan; Turkbey, Evrim; Harmon, Stephanie A; Chen, Marcus Y; Regenold, David; Lynch, Nicolas F; Ramelli, Sabrina; Li, Willy; Krack, Janell; Kuruppu, Janaki; Lionakis, Michail S; Strich, Jeffrey R; Davey, Richard; Childs, Richard; Chertow, Daniel S; Kovacs, Joseph A; Parizi, Parizad Torabi-; Suffredini, Anthony F
  3. Cell Reports. Medicine. 2024, Jul 16; 5(7): 101642.
  1. 4.   Slower CDK4 and faster CDK2 activation in the cell cycle
  2. Zhang,Wengang; Liu,Yonglan; Jang,Hyunbum; Nussinov,Ruth
  3. Structure (London, England : 1993). 2024, Apr 23;
  1. 5.   Dihydroxyphenyl- and Heteroaromatic-Based Thienopyrimidinones to Tackle HIV-1 LEDGF/p75-Dependent IN Activity
  2. Tocco, Graziella; Canton, Serena; Laus, Antonio; Caboni, Pierluigi; Le Grice, Stuart F J; Tramontano, Enzo; Esposito, Francesca
  3. Molecules (Basel, Switzerland). 2023, Sep 19; 28(18):
  1. 6.   Differential sensitivity of the yeast Lon protease Pim1p to impaired mitochondrial respiration
  2. Metzger,Meredith; Scales, Jessica L; Grant, Garis A; Molnar,Abby; Loncarek,Jadranka; Weissman,Allan
  3. The Journal of Biological Chemistry. 2023, Aug; 299(8): 104937.
  1. 7.   Context-Dependent Function of Long Noncoding RNA PURPL in Transcriptome Regulation during p53 Activation
  2. Hartford, Corrine Corrina R; Shrestha, Roshan L; Pongor, Lorinc; Zhao,Yongmei; Chen, Xiongfong; Fromont,Caroline; Chaudhary, Ritu; Li, Xiao Ling; Pasterczyk, Katherine R; Kumar, Ravi; Muys, Bruna R; Tsitsipatis, Dimitrios; Chari,Raj; Gorospe, Myriam; Aladjem, Mirit I; Khan, Javed; Basrai, Munira A; Grammatikakis, Ioannis; Lal, Ashish
  3. Molecular and Cellular Biology. 2022, Nov 07; 42(12): e0028922.
  1. 8.   Serum and Cervicovaginal Fluid Antibody Profiling in Herpes Simplex Virus (HSV) Seronegative Recipients of the HSV529 Vaccine
  2. Wang, Kening; Dropulic, Lesia; Bozekowski, Joel; Pietz, Harlan L; Jegaskanda, Sinthujan; Dowdell, Kennichi; Vogel, Joshua S; Garabedian, Doreen; Oestreich, Makinna; Nguyen, Hanh; Ali, Mir A; Lumbard, Keith; Hunsberger, Sally; Reifert, Jack; Haynes, Winston A; Sawyer, Jaymie R; Shon, John C; Daugherty, Patrick S; Cohen, Jeffrey I
  3. The Journal of Infectious Diseases. 2021, Nov 16; 224(9): 1509-1519.
  1. 9.   EML4-ALK induces cellular senescence in mortal normal human cells and promotes anchorage-independent growth in hTERT-transduced normal human cells
  2. Miyanaga, Akihiko; Matsumoto, Masaru; Beck, Jessica A.; Horikawa, Izumi; Oike, Takahiro; Okayama, Hirokazu; Tanaka, Hiromi; Burkett,Sandra; Robles, Ana I.; Khan, Mohammed; Lissa, Delphine; Seike, Masahiro; Gemma, Akihiko; Mano, Hiroyuki; Harris, Curtis C.
  3. BMC Cancer. 2021, Mar 24; 21(1):
  1. 10.   Cryo-EM Structures of SARS-CoV-2 Spike without and with ACE2 Reveal a pH-Dependent Switch to Mediate Endosomal Positioning of Receptor-Binding Domains
  2. Zhou, Tongqing; Tsybovsky,Yaroslav; Gorman, Jason; Rapp, Micah; Cerutti, Gabriele; Chuang, Gwo-Yu; Katsamba, Phinikoula S; Sampson, Jared M; Schön, Arne; Bimela, Jude; Boyington, Jeffrey C; Nazzari, Alexandra; Olia, Adam S; Shi, Wei; Sastry, Mallika; Stephens,Tyler; Stuckey, Jonathan; Teng, I-Ting; Wang, Pengfei; Wang, Shuishu; Zhang, Baoshan; Friesner, Richard A; Ho, David D; Mascola, John R; Shapiro, Lawrence; Kwong, Peter D
  3. Cell Host & Microbe. 2020, Dec 9; 28: 867-+.
  1. 11.   Networks of HIV-1 Envelope Glycans Maintain Antibody Epitopes in the Face of Glycan Additions and Deletions
  2. Seabright, Gemma E; Cottrell, Christopher A; van Gils, Marit J; D'addabbo, Alessio; Harvey, David J; Behrens, Anna-Janina; Allen, Joel D; Watanabe, Yasunori; Scaringi, Nicole; Polveroni, Thomas M; Maker, Allison; Vasiljevic, Snezana; De Val Alda,Natalia; Sanders, Rogier W; Ward, Andrew B; Crispin, Max
  3. Structure (London, England : 1993). 2020, AUG 4; 28(8): 897-+.
  1. 12.   Evaluation of the Anti-Tumor Activity of the Humanized Monoclonal Antibody NEO-201 in Preclinical Models of Ovarian Cancer
  2. Zeligs, Kristen P.; Morelli, Maria Pia; David, Justin M.; Neuman, Monica; Hernandez, Lidia; Hewitt, Stephen; Ozaki, Michelle; Osei-Tutu, Akosua; Anderson, David; Andresson,Thorkell; Das,Sudipto; Lack,Justin; Abdelmaksoud,Abdalla; Fantini, Massimo; Arlen, Philip M.; Tsang, Kwong Y.; Annunziata, Christina M.
  3. FRONTIERS IN ONCOLOGY. 2020, JUN 19; 10: 805.
  1. 13.   Calcium-induced calcium release and type 3 ryanodine receptors modulate the slow afterhyperpolarising current, sI(AHP), and its potentiation in hippocampal pyramidal neurons
  2. Tedoldi, Angelo; Ludwig, Petra; Fulgenzi,Gianluca; Takeshima, Hiroshi; Pedarzani, Paola; Stocker, Martin
  3. PLOS ONE. 2020, JUN 19; 15(7):
  1. 14.   The Mystery of Rap1 Suppression of Oncogenic Ras
  2. Nussinov,Ruth; Jang,Hyunbum; Zhang,Mingzhen; Tsai,Chung-Jung; Sablina, Anna A.
  3. Trends in cancer. 2020, May; 6(5): 369-379.
  1. 15.   Structural basis for DNA damage-induced phosphoregulation of MDM2 RING domain
  2. Magnussen, Helge M.; Ahmed, Syed F.; Sibbet, Gary J.; Hristova, Ventzislava A.; Nomura, Koji; Hock, Andreas K.; Archibald, Lewis J.; Jamieson, Andrew G.; Fushman, David; Vousden, Karen H.; Weissman, Allan M.; Huang, Danny T.
  3. Nature communications. 2020, Apr 29; 11(1):
  1. 16.   A protein quality control pathway at the mitochondrial outer membrane
  2. Metzger,Meredith; Scales, Jessica L; Dunklebarger, Mitchell F; Loncarek,Jadranka; Weissman,Allan
  3. eLife. 2020, Mar 02; 9
  1. 17.   Phase-dependent transcranial magnetic stimulation of the lesioned hemisphere is accurate after stroke
  2. Hussain, Sara J; Hayward, William; Fourcand, Farah; Zrenner, Christoph; Ziemann, Ulf; Buch, Ethan R; Hayward, Margaret K; Cohen, Leonardo G
  3. Brain stimulation. 2020, SEP-OCT; 13(5): 1354-1357.
  1. 18.   Involvement of the N Domain Residues E34, K35, and R38 in the Functionally Active Structure of Escherichia coli Lon Protease
  2. Andrianova, A. G.; Kudzhaev, A. M.; Abrikosova, V. A.; Gustchina,Alla; Smirnov, I. V.; Rotanova, T. V.
  3. Acta Naturae. 2020, Oct-Dec; 12(4): 86-97.
  1. 19.   APOL1 Nephropathy Risk Alleles and Risk of Sepsis in Blacks
  2. Chaudhary, Ninad S; Moore, Justin X; Zakai, Neil A; Judd, Suzanne E; Naik, Rakhi P; Limou, Sophie; Cushman, Mary; Lange, Leslie A; Wang, Henry E; Winkler,Cheryl; Irvin, Marguerite R; Kopp, Jeffrey B; Gutiérrez, Orlando M
  3. Clinical journal of the American Society of Nephrology : CJASN. 2019, Dec 6; 14(12): 1733-1740.
  1. 20.   NusG-Dependent RNA Polymerase Pausing and Tylosin-Dependent Ribosome Stalling Are Required for Tylosin Resistance by Inducing 23S rRNA Methylation in Bacillus subtilis
  2. Yakhnin, Helen; Yakhnin, Alexander V; Mouery, Brandon L; Mandell, Zachary F; Karbasiafshar, Catherine; Kashlev,Mikhail; Babitzke, Paul
  3. mBio. 2019, Nov; 10(6): pii: e02665-19..
  1. 21.   Emerging Allosteric Mechanism of EGFR Activation in Physiological and Pathological Contexts
  2. Tsai,Chung-Jung; Nussinov,Ruth
  3. Biophysical journal. 2019, Jul 9; 117(1): 5-13.
  1. 22.   IL-15 enhanced antibody-dependent cellular cytotoxicity mediated by NK cells and macrophages
  2. Zhang,Meili; Wen, Bernard; Anton, Olga M.; Yao, Zhengsheng; Dubois, Sigrid; Ju, Wei; Sato, Noriko; DiLillo, David J.; Bamford, Richard N.; Ravetch, Jeffrey; Waldmann, Thomas A.
  3. Proceedings of the National Academy of Sciences of the United States of America. 2018, NOV 13; 115(46): E10915-E10924.
  1. 23.   Ligand accessibility to the HIV-1 Env co-receptor binding site can occur prior to CD4 engagement and is independent of viral tier category
  2. Boliar, Saikat; Patil, Shilpa; Shukla, Brihaspati N; Ghobbeh, Ali; Deshpande, Suprit; Chen, Weizao; Guenaga, Javier; Dimitrov, Dimiter S; Wyatt, Richard T; Chakrabarti, Bimal K
  3. Virology. 2018, Jun; 519: 99-105.
  1. 24.   Engaging Anaphase Catastrophe Mechanisms to Eradicate Aneuploid Cancers
  2. Kawakami, Masanori; Mustachio, Lisa Maria; Liu, Xi; Dmitrovsky, Ethan
  3. Molecular Cancer Therapeutics. 2018, Apr; 17(4): 724-731.
  1. 25.   Growth rate regulation in Escherichia coli
  2. Jin, D. J.; Cagliero, C.; Zhou, Y. N.
  3. FEMS Microbiology Reviews. 2012, Mar; 36(2): 269-287.
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