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  1. 1.   A computational model for classification of BRCA2 variants using mouse embryonic stem cell-based functional assays
  2. Biswas,Kajal; Lipton, Gary B; Stauffer,Stacey; Sullivan,Teresa; Cleveland, Linda; Southon,Eileen; Reid,Susan; Magidson,Valentin; Iversen, Edwin S; Sharan,Shyam
  3. NPJ genomic medicine. 2020, Dec 08; 5(1): 52.
  1. 2.   Regulation of senescence and the SASP by the transcription factor C/EBP beta
  2. Salotti,Jacqueline; Johnson,Peter
  3. Experimental gerontology. 2019, Dec; 128
  1. 3.   Structures and operating principles of the replisome
  2. Gao, Yang; Cui, Yanxiang; Fox,Tara; Lin, Shiqiang; Wang, Huaibin; De Val Alda,Natalia; Zhou, Z. Hong; Yang, Wei
  3. Science (New York, N.Y.). 2019, Feb 22; 363: 835-+.
  1. 4.   Therapeutic Potential of Leelamine, a Novel Inhibitor of Androgen Receptor and Castration-Resistant Prostate Cancer
  2. Singh, Krishna B.; Ji,Xinhua; Singh, Shivendra V.
  3. MOLECULAR CANCER THERAPEUTICS. 2018, Oct; 17(10): 2079-2090.
  1. 5.   Inhibition of Bacterial Gene Transcription with an RpoN-Based Stapled Peptide
  2. Payne, Sterling R; Pau, Daniel I; Whiting, Amanda L; Kim, Ye Joon; Pharoah, Blaze M; Moi, Christina; Boddy, Christopher N; Bernal, Federico
  3. Cell Chemical Biology. 2018, Sep 20; 25(9): 1059-1066.e4.
  1. 6.   Englerin A Inhibits EWS-FLI1 DNA Binding in Ewing Sarcoma Cells
  2. Caropreso, V.; Darvishi, E.; Turbyville, T. J.; Ratnayake, R.; Grohar, P. J.; McMahon, J. B.; Woldemichael, G. M.
  3. The Journal of biological chemistry. 2016, 6-May; 291(19): 10058-66.
  1. 7.   Negative regulation of human U6 snRNA promoter by p38 kinase through Oct-1
  2. Lin, B. R.; Natarajan, V.
  3. Gene. 2012, Apr; 497(2): 200-207.
  1. 8.   Molecular Dynamics Approaches Estimate the Binding Energy of HIV-1 Integrase Inhibitors and Correlate with In Vitro Activity
  2. Johnson, B. C.; Metifiot, M.; Pommier, Y.; Hughes, S. H.
  3. Antimicrobial Agents and Chemotherapy. 2012, Jan; 56(1): 411-419.
  1. 9.   3 ' UTR elements inhibit Ras-induced C/EBP beta post-translational activation and senescence in tumour cells
  2. Basu, S. K.; Malik, R.; Huggins, C. J.; Lee, S.; Sebastian, T.; Sakchaisri, K.; Quinones, O. A.; Alvord, W. G.; Johnson, P. F.
  3. Embo Journal. 2011, Sep; 30(18): 3714-3728.
  1. 10.   Dynamic Allostery: Linkers Are Not Merely Flexible
  2. Ma, B. Y.; Tsai, C. J.; Haliloglu, T.; Nussinov, R.
  3. Structure. 2011, Jul; 19(7): 907-917.
  1. 11.   NusA Interaction with the alpha Subunit of E-coil RNA Polymerase Is via the UP Element Site and Releases Autoinhibition
  2. Schweimer, K.; Prasch, S.; Sujatha, P. S.; Bubunenko, M.; Gottesman, M. E.; Rosch, P.
  3. Structure. 2011, Jul; 19(7): 945-954.
  1. 12.   Identification of an Inhibitor of the EWS-FLI1 Oncogenic Transcription Factor by High-Throughput Screening
  2. Grohar, P. J.; Woldemichael, G. M.; Griffin, L. B.; Mendoza, A.; Chen, Q. R.; Yeung, C.; Currier, D. G.; Davis, S.; Khanna, C.; Khan, J.; McMahon, J. B.; Helman, L. J.
  3. Journal of the National Cancer Institute. 2011, Jun; 103(12): 962-978.
  1. 13.   The Role of Response Elements Organization in Transcription Factor Selectivity: The IFN-beta Enhanceosome Example
  2. Pan, Y. P.; Nussinov, R.
  3. Plos Computational Biology. 2011, Jun; 7(6): 14.
  1. 14.   Interferon-Inducible Protein 16: Insight into the Interaction with Tumor Suppressor p53
  2. Liao, J. C. C.; Lam, R.; Brazda, V.; Duan, S. L.; Ravichandran, M.; Ma, J.; Xiao, T.; Tempel, W.; Zuo, X. B.; Wang, Y. X.; Chirgadze, N. Y.; Arrowsmith, C. H.
  3. Structure. 2011, Mar; 19(3): 418-429.
  1. 15.   70% efficiency of bistate molecular machines explained by information theory, high dimensional geometry and evolutionary convergence
  2. Schneider, T. D.
  3. Nucleic Acids Research. 2010, Oct; 38(18): 5995-6006.
  1. 16.   Repression of Id2 expression by Gfi-1 is required for B-cell and myeloid development
  2. Li, H. J.; Ji, M.; Klarmann, K. D.; Keller, J. R.
  3. Blood. 2010, Aug 19; 116(7): 1060-1069.
  1. 17.   Lysine120 Interactions with p53 Response Elements can Allosterically Direct p53 Organization
  2. Pan, Y. P.; Nussinov, R.
  3. Plos Computational Biology. 2010, Aug; 6(8): e1000878.
  1. 18.   CCRXP: exploring clusters of conserved residues in protein structures
  2. Ahmad, S.; Keskin, O.; Mizuguchi, K.; Sarai, A.; Nussinov, R.
  3. Nucleic Acids Research. 2010, Jul; 38: W398-W401.
  1. 19.   Mechanisms of transcription factor selectivity
  2. Pan, Y. P.; Tsai, C. J.; Ma, B. Y.; Nussinov, R.
  3. Trends in Genetics. 2010, Feb; 26(2): 75-83.
  1. 20.   Translocation by multi-subunit RNA polymerases
  2. Kireeva, M.; Kashlev, M.; Burton, Z. F.
  3. Biochimica Et Biophysica Acta-Gene Regulatory Mechanisms. 2010, May-Jun; 1799(5-6): 389-401.
  1. 21.   The alarmin functions of high-mobility group proteins
  2. Yang, D.; Tewary, P.; de la Rosa, G.; Wei, F.; Oppenheim, J. J.
  3. Biochimica Et Biophysica Acta-Gene Regulatory Mechanisms. 2010, Jan-Feb; 1799(1-2): 157-163.
  1. 22.   Functional Analysis of N-Terminal Residues of Ty1 Integrase
  2. Moore, S. P.; Garfinkel, D. J.
  3. Journal of Virology. 2009 83(18): 9502-9511.
  1. 23.   Cooperativity Dominates the Genomic Organization of p53-Response Elements: A Mechanistic View
  2. Pan, Y. P.; Nussinov, R.
  3. Plos Computational Biology. 2009 5(7):
  1. 24.   Novel Broad-Spectrum Bis-(Imidazolinylindole) Derivatives with Potent Antibacterial Activities against Antibiotic-Resistant Strains
  2. Panchal, R. G.; Ulrich, R. L.; Lane, D.; Butler, M. M.; Houseweart, C.; Opperman, T.; Williams, J. D.; Peet, N. P.; Moir, D. T.; Nguyen, T.; Gussio, R.; Bowlin, T.; Bavari, S.
  3. Antimicrobial Agents and Chemotherapy. 2009 53(10): 4283-4291.
  1. 25.   Id2 intrinsically regulates lymphoid and erythroid development via interaction with different target proteins
  2. Ji, M.; Li, H. J.; Suh, H. C.; Klarmann, K. D.; Yokota, Y.; Keller, J. R.
  3. Blood. 2008 112(4): 1068-1077.
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