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  1. 1.   Co-incubation of Short Amphiphilic Peptides with Dicer Substrate RNAs Results in ß-Sheet Fibrils for Enhanced Gene Silencing in Cancer Cells
  2. Gupta, Kshitij; Parlea, Lorena; Puri,Anu; Smith, Katelyn; Puri,Anu; Bergman, Joseph T; Kim, Taejin; Shapiro,Bruce
  3. RNA Nanomed. 2024, Dec; 1(1): 61-78.
  1. 2.   Graphite-Templated Amyloid Nanostructures Formed by a Potential Pentapeptide Inhibitor for Alzheimer's Disease: A Combined Study of Real-Time Atomic Force Microscopy and Molecular Dynamics Simulations
  2. Li, Na; Jang, Hyunbum; Yuan, Ming; Li, Wanrong; Yun, Xiaolin; Lee, Joon; Du, Qiqige; Nussinov, Ruth; Hou, Jiahua; Lal, Ratnesh; Zhang, Feng
  3. Langmuir. 2017, Jul 11; 33(27): 6647-6656.
  1. 3.   Effects of Point Substitutions on the Structure of Toxic Alzheimer's beta-Amyloid Channels: Atomic Force Microscopy and Molecular Dynamics Simulations
  2. Connelly, L.; Jang, H.; Arce, F. T.; Ramachandran, S.; Kagan, B. L.; Nussinov, R.; Lal, R.
  3. Biochemistry. 2012, Apr; 51(14): 3031-3038.
  1. 4.   Atomic Force Microscopy and MD Simulations Reveal Pore-Like Structures of All-D-Enantiomer of Alzheimer's beta-Amyloid Peptide: Relevance to the Ion Channel Mechanism of AD Pathology
  2. Connelly, L.; Jang, H.; Arce, F. T.; Capone, R.; Kotler, S. A.; Ramachandran, S.; Kagan, B. L.; Nussinov, R.; Lal, R.
  3. Journal of Physical Chemistry B. 2012, Feb; 116(5): 1728-1735.
  1. 5.   Polymorphism of amyloid beta peptide in different environments: implications for membrane insertion and pore formation
  2. Arce, F. T.; Jang, H. B.; Ramachandran, S.; Landon, P. B.; Nussinov, R.; Lal, R.
  3. Soft Matter. 2011, Jun 7; 7(11): 5267-5273.
  1. 6.   Resonance Assignment and Three-Dimensional Structure Determination of a Human alpha-Defensin, HNP-1, by Solid-State NMR
  2. Zhang, Y.; Doherty, T.; Li, J.; Lu, W. Y.; Barinka, C.; Lubkowski, J.; Hong, M.
  3. Journal of Molecular Biology. 2010, Mar; 397(2): 408-422.
  1. 7.   Lipid-Modulated Pharmacophore Nanorods Assembled at the Air/Water Interface
  2. Philosof-Mazor, L.; Volinsky, R.; Jopp, J.; Blumberg, P.; Rapaport, H.; Marquez, V. E.; Jelinek, R.
  3. Chemphyschem. 2009 10(15): 2615-2619.
  1. 8.   Molecular dynamics simulations of Alzheimer A beta(40) elongation and lateral association
  2. Zheng, J.; Ma, B. Y.; Chang, Y.; Nussinov, R.
  3. Frontiers in Bioscience. 2008 13: 3919-3930.
  1. 9.   Computational study of the fibril organization of polyglutamine repeats reveals a common motif identified in beta-helices
  2. Zanuy, D.; Gunasekaran, K.; Lesk, A. M.; Nussinov, R.
  3. Journal of Molecular Biology. 2006, Apr; 358(1): 330-345.
  1. 10.   Fibril modelling by sequence and structure conservation analysis combined with protein docking techniques: beta 2-microglobulin amyloidosis
  2. Benyamini, H.; Gunasekaran, K.; Wolfson, H.; Nussinov, R.
  3. Biochimica Et Biophysica Acta-Proteins and Proteomics. 2005, NOV 10; 1753(1): 121-130.
  1. 11.   Energy landscape of amyloidogenic peptide oligomerization by parallel-tempering molecular dynamics simulation: Significant role of Asn ladder
  2. Tsai, H. H.; Reches, M.; Tsai, C. J.; Gunasekaran, K.; Gazit, E.; Nussinov, R.
  3. Proceedings of the National Academy of Sciences of the United States of America. 2005, JUN 7; 102(23): 8174-8179.
  1. 12.   A comparative study of amyloid fibril formation by residues 15-19 of the human calcitonin hormone: A single beta-sheet model with a small hydrophobic core
  2. Haspel, N.; Zanuy, D.; Ma, B. Y.; Wolfson, H.; Nussinov, R.
  3. Journal of Molecular Biology. 2005, FEB 4; 345(5): 1213-1227.
  1. 13.   Peptide sequence and amyloid formation: Molecular simulations and experimental study of a human islet amyloid polypeptide fragment and its analogs
  2. Zanuy, D.; Porat, Y.; Gazit, E.; Nussinov, R.
  3. Structure. 2004 12(3): 439-455.
  1. 14.   Stabilities and conformations of Alzheimer's beta-amyloid peptide oligomers (A beta(16-22 ') A beta(16-35 ') and A beta(10-35)): Sequence effects
  2. Ma, B. Y.; Nussinov, R.
  3. Proceedings of the National Academy of Sciences of the United States of America. 2002 99(22): 14126-14131.
  1. 15.   Organization of the mouse microfibril-associated glycoprotein-2 (MAGP-2) gene
  2. Frankfater, C.; Maus, E.; Gaal, K.; Segade, F.; Copeland, N. G.; Gilbert, D. J.; Jenkins, N. A.; Shipley, J. M.
  3. Mammalian Genome. 2000 11(3): 191-195.
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