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  1. 1.   Cationic Residues of the HIV-1 Nucleocapsid Protein Enable DNA Condensation to Maintain Viral Core Particle Stability during Reverse Transcription
  2. Gien, Helena; Morse, Michael; McCauley, Micah J; Rouzina, Ioulia; Gorelick,Robert; Williams, Mark C
  3. Viruses. 2024, May 29; 16(6): 872.
  1. 2.   HIV-1 Nucleocapsid Protein Binds Double-Stranded DNA in Multiple Modes to Regulate Compaction and Capsid Uncoating
  2. Gien, Helena; Morse, Michael; McCauley, Micah J; Kitzrow, Jonathan P; Musier-Forsyth, Karin; Gorelick,Robert; Rouzina, Ioulia; Williams, Mark C
  3. Viruses. 2022, Jan 25; 14(2):
  1. 3.   The HIV-1 Nucleocapsid Regulates Its Own Condensation by Phase-Separated Activity-Enhancing Sequestration of the Viral Protease during Maturation
  2. Lyonnais, Sébastien; Sadiq, S Kashif; Lorca-Oró, Cristina; Dufau, Laure; Nieto-Marquez, Sara; Escribà, Tuixent; Gabrielli, Natalia; Tan, Xiao; Ouizougun-Oubari, Mohamed; Okoronkwo, Josephine; Reboud-Ravaux, Michèle; Gatell, José Maria; Marquet, Roland; Paillart, Jean-Christophe; Meyerhans, Andreas; Tisné, Carine; Gorelick,Robert; Mirambeau, Gilles
  3. Viruses. 2021, Nov 19; 13(11):
  1. 4.   A combined approach to characterize ligand-induced solid-solid phase transitions in biomacromolecular crystals
  2. Ramakrishnan, Saminathan; Stagno,Jason; Magidson,Valentin; Heinz,Will; Wang,Yun-Xing
  3. Journal of applied crystallography. 2021, Jun 01; 54(Pt 3): 787-796.
  1. 5.   Structural mimicry drives HIV-1 Rev-mediated HERV-K expression
  2. O'Carroll, Ina P; Fan,Lixin; Kroupa,Tomas; McShane, Erin K; Theodore, Christophe; Yates, Elizabeth A; Kondrup, Benjamin; Ding,Jienyu; Martin, Tyler S; Rein,Alan; Wang,Yun-Xing
  3. Journal of molecular biology. 2020, Dec 4; 432(24): pii: S0022-2836(20)30630-6.
  1. 6.   Protein-Assisted Room-Temperature Assembly of Rigid, Immobile Holliday Junctions and Hierarchical DNA Nanostructures
  2. Ramakrishnan,Saminathan; Subramaniam, Sivaraman; Kielar, Charlotte; Grundmeier, Guido; Stewart, A. Francis; Keller, Adrian
  3. MOLECULES. 2020, NOV; 25(21):
  1. 7.   Characterization challenges for a cellulose nanocrystal reference material: dispersion and particle size distributions
  2. Jakubek, Zygmunt J.; Chen, Maohui; Couillard, Martin; Leng, Tianyang; Liu, Leslie; Zou, Shan; Baxa, Ulrich; Clogston, Jeffrey; Hamad, Wadood Y.; Johnston, Linda J.
  3. JOURNAL OF NANOPARTICLE RESEARCH. 2018, APR 5; 20(4):
  1. 8.   Amyloid beta Ion Channels in a Membrane Comprising Brain Total Lipid Extracts
  2. Lee, Joon; Kim, Young Hun; Arce, Fernando T.; Gillman, Alan L.; Jang, Hyunbum; Kagan, Bruce L.; Nussinov, Ruth; Yang, Jerry; Lal, Ratnesh
  3. ACS CHEMICAL NEUROSCIENCE. 2017, Jun 21; 8(6): 1348-1357.
  1. 9.   All-D-Enantiomer of beta-Amyloid Peptide Forms Ion Channels in Lipid Bilayers
  2. Capone, R.; Jang, H.; Kotler, S. A.; Connelly, L.; Arce, F. T.; Ramachandran, S.; Kagan, B. L.; Nussinov, R.; Lal, R.
  3. Journal of Chemical Theory and Computation. 2012, Mar; 8(3): 1143-1152.
  1. 10.   Polymorphism of amyloid beta peptide in different environments: implications for membrane insertion and pore formation
  2. Arce, F. T.; Jang, H. B.; Ramachandran, S.; Landon, P. B.; Nussinov, R.; Lal, R.
  3. Soft Matter. 2011, Jun 7; 7(11): 5267-5273.
  1. 11.   Antimicrobial Protegrin-1 Forms Amyloid-Like Fibrils with Rapid Kinetics Suggesting a Functional Link
  2. Jang, H. J. H.; Arce, F. T.; Mustata, M.; Ramachandran, S.; Capone, R.; Nussinov, R.; Lal, R.
  3. Biophysical Journal. 2011, Apr; 100(7): 1775-1783.
  1. 12.   beta-Barrel Topology of Alzheimer's beta-Amyloid Ion Channels
  2. Jang, H.; Arce, F. T.; Ramachandran, S.; Capone, R.; Lal, R.; Nussinov, R.
  3. Journal of Molecular Biology. 2010, Dec; 404(5): 917-934.
  1. 13.   Polymorphism in Alzheimer A beta Amyloid Organization Reflects Conformational Selection in a Rugged Energy Landscape
  2. Miller, Y.; Ma, B.; Nussinov, R.
  3. Chemical Reviews. 2010, Aug; 110(8): 4820-4838.
  1. 14.   Truncated beta-amyloid peptide channels provide an alternative mechanism for Alzheimer's Disease and Down syndrome
  2. Jang, H.; Arce, F. T.; Ramachandran, S.; Capone, R.; Azimova, R.; Kagan, B. L.; Nussinov, R.; Lal, R.
  3. Proceedings of the National Academy of Sciences of the United States of America. 2010, Apr; 107(14): 6538-6543.
  1. 15.   Polymorphism of Alzheimer's A beta(17-42) (p3) Oligomers: The Importance of the Turn Location and Its Conformation
  2. Miller, Y.; Ma, B. Y.; Nussinov, R.
  3. Biophysical Journal. 2009 97(4): 1168-1177.
  1. 16.   Mechanical properties of murine leukemia virus particles: Effect of maturation
  2. Kol, N.; Gladnikoff, M.; Barlam, D.; Shneck, R. Z.; Rein, A.; Rousso, I.
  3. Biophysical Journal. 2006, Jul; 91(2): 767-774.
  1. 17.   Simultaneous topography and recognition Imaging using force microscopy
  2. Stroh, C. M.; Ebner, A.; Geretschlager, M.; Freudenthaler, G.; Kienberger, F.; Kamruzzahan, A. S. M.; Smith-Gil, S. J.; Gruber, H. J.; Hinterdorfer, P.
  3. Biophysical Journal. 2004, SEP; 87(3): 1981-1990.
  1. 18.   Antibody recognition imaging by force microscopy
  2. Raab, A.; Han, W. H.; Badt, D.; Smith-Gill, S. J.; Lindsay, S. M.; Schindler, H.; Hinterdorfer, P.
  3. Nature Biotechnology. 1999 17(9): 902-905.
  1. 19.   Combining Biophysical Methods for Structure-Function Analyses of RNA in Solution
  2. Lee,Yun-Tzai; Fan,Lixin; Ding,Jienyu; Wang,Yun-Xing
  3. Methods in molecular biology (Clifton, N.J.). 2023 2568: 165-177.
  1. 20.   High-Resolution Atomic Force Microscopy Imaging of RNA Molecules in Solution
  2. Ding,Jienyu
  3. Methods in Molecular Biology (Clifton, N.J.). 2023 2568: 133-145.
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