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  1. 1.   Developmental onset of planarian whole-body regeneration depends on axis reset
  2. Booth, Clare L T; Stevens, Brian C; Stubbert, Clover A; Kallgren,Neil; Deihl,Ennis; Davies,Erin
  3. Current Biology : CB. 2025, Apr 11;
  1. 2.   Longitudinal single-cell profiles of lung regeneration after viral infection reveal persistent injury-associated cell states
  2. Niethamer, Terren K; Planer, Joseph D; Morley, Michael P; Babu, Apoorva; Zhao, Gan; Basil, Maria C; Cantu, Edward; Frank, David B; Diamond, Joshua M; Nottingham, Ana N; Li, Shanru; Sharma,Arnav; Hallquist, Hannah; Levin, Lillian I; Zhou, Su; Vaughan, Andrew E; Morrisey, Edward E
  3. Cell Stem Cell. 2025, Jan 13;
  1. 3.   Multi-objective latent space optimization of generative molecular design models
  2. Abeer, A N M Nafiz; Urban, Nathan M; Weil,Michael; Alexander, Francis J; Yoon, Byung-Jun
  3. Patterns (New York, N.Y.). 2024, Oct 11; 5(10): 101042.
  1. 4.   Dietary therapy of murine primary biliary cholangitis induces hepatocellular steatosis: A cautionary tale
  2. Zhang, Weici; Al Tekreeti, Taha; Leung, Patrick S C; Tsuneyama, Koichi; Dhillon, Harleen; Rojas, Manuel; Heuer, Luke S; Ridgway, William M; Ansari, Aftab A; Young,Howard; Mackay, Charles R; Gershwin, M Eric
  3. Liver International : official journal of the International Association for the Study of the Liver. 2024, Aug 05;
  1. 5.   Evaluation of somatic copy number variation detection by NGS technologies and bioinformatics tools on a hyper-diploid cancer genome
  2. Masood, Daniall; Ren, Luyao; Nguyen, Cu; Brundu, Francesco G; Zheng, Lily; Zhao,Yongmei; Jaeger, Erich; Li, Yong; Cha, Seong Won; Halpern, Aaron; Truong, Sean; Virata, Michael; Yan, Chunhua; Chen, Qingrong; Pang, Andy; Alberto, Reyes; Xiao, Chunlin; Yang, Zhaowei; Chen, Wanqiu; Wang, Charles; Cross, Frank; Catreux, Severine; Shi, Leming; Beaver, Julia A; Xiao, Wenming; Meerzaman, Daoud M
  3. Genome Biology. 2024, Jun 20; 25(1): 163.
  1. 6.   A neuron-immune circuit regulates neurodegeneration in the hindbrain and spinal cord of Arf1-ablated mice
  2. Wang, Guohao; Jin, Shuhan; Liu, Jiaqi; Li, Xu; Dai, Peng; Wang, Yuetong; Hou, Steven X
  3. National Science Review. 2023, Dec; 10(12): nwad222.
  1. 7.   Ets-1 transcription factor regulates glial cell regeneration and function in planarians
  2. Chandra, Bidushi; Voas,Matthew; Davies,Erin; Roberts-Galbraith, Rachel H
  3. Development (Cambridge, England). 2023, Sep 15; 150(18):
  1. 8.   Delineation of functional subdomains of Huntingtin protein and their interaction with HAP40
  2. Alteen, Matthew G; Deme,Justin; Alvarez, Claudia P; Loppnau, Peter; Hutchinson, Ashley; Seitova, Alma; Chandrasekaran, Renu; Silva Ramos, Eduardo; Secker, Christopher; Alqazzaz, Mona; Wanker, Erich E; Lea, Susan M; Arrowsmith, Cheryl H; Harding, Rachel J
  3. Structure (London, England : 1993). 2023, Sep 7; 31
  1. 9.   The beneficial effects of commensal E. coli for colon epithelial cell recovery are related with Formyl peptide receptor 2 (Fpr2) in epithelial cells
  2. Chen,Keqiang; McCulloch, John; Das Neves, Rodrigo; Roderigues, Gisele; Hsieh,Wang-Ting; Gong,Wang; Yoshimura,Teizo; Huang, Jiaqiang; O'hUigin, Colm; Difilippantonio,Simone; McCollum, Matthew; Jones, Georgette; Durum,Scott; Trinchieri, Giorgio; Wang, Ji Ming
  3. Gut Pathogens. 2023, Jun 15; 15(1): 28.
  1. 10.   Craniofacial Development Is Fine-Tuned by Sox2
  2. Mandalos, Nikolaos Panagiotis; Dimou, Aikaterini; Gavala, Maria Angeliki; Lambraki, Efstathia; Remboutsika, Eumorphia
  3. Genes. 2023, Jan 31; 14(2):
  1. 11.   Structural variant analysis of a cancer reference cell line sample using multiple sequencing technologies
  2. Talsania,Keyur; Shen,Tsai-Wei; Chen, Xiongfong; Jaeger, Erich; Li, Zhipan; Chen, Zhong; Chen, Wanqiu; Tran,Bao; Kusko, Rebecca; Wang, Limin; Pang, Andy Wing Chun; Yang, Zhaowei; Choudhari, Sulbha; Colgan, Michael; Fang, Li Tai; Carroll, Andrew; Shetty,Jyoti; Kriga,Yuliya; German,Oksana; Smirnova,Tatyana; Liu, Tiantain; Li, Jing; Kellman, Ben; Hong, Karl; Hastie, Alex R; Natarajan, Aparna; Moshrefi, Ali; Granat, Anastasiya; Truong, Tiffany; Bombardi, Robin; Mankinen, Veronnica; Meerzaman, Daoud; Mason, Christopher E; Collins, Jack; Stahlberg, Eric; Xiao, Chunlin; Wang, Charles; Xiao, Wenming; Zhao,Yongmei
  3. Genome Biology. 2022, Dec 13; 23(1): 255.
  1. 12.   Systematic Analysis of Kaposi's Sarcoma-associated Herpesvirus Genomes from a Kaposi's Sarcoma (KS) Case-Control Study in Cameroon: Evidence of Dual Infections but No Association Between Viral Sequence Variation and KS Risk
  2. Marshall,Vickie; Fisher, Nicholas C; Goodman,Charles; Cornejo Castro,Elena; Liu, Isabella; Khanal, Sirish; Holdridge,Benjamin; Thorpe, Abigail L; Labo,Nazzarena; Stolka, Kristen B; Hemingway-Foday, Jennifer J; Abassora, Mahamat; N'Dom, Paul; Smith, Jennifer S; Sallah, Neneh; Palser, Anne L; Kellam, Paul; Keele,Brandon; Whitby,Denise
  3. International Journal of Cancer. 2022, May 24;
  1. 13.   Exploration of Ultralarge Compound Collections for Drug Discovery
  2. Warr, Wendy A; Nicklaus,Marc; Nicolaou, Christos A; Rarey, Matthias
  3. Journal of Chemical Information and Modeling. 2022, Apr 14;
  1. 14.   Kaposi's sarcoma-associated herpesvirus T cell responses in HIV seronegative individuals from rural Uganda
  2. Nalwoga, Angela; Roshan, Romin; Moore, Kyle; Marshall, Vickie; Miley, Wendell; Labo, Nazzarena; Nakibuule, Marjorie; Cose, Stephen; Rochford, Rosemary; Newton, Robert; Whitby,Denise
  3. Nature Communications. 2021, Dec 16; 12(1):
  1. 15.   Regenerative responses of rabbit corneal endothelial cells to stimulation by fibroblast growth factor 1 (FGF1) derivatives, TTHX1001 and TTHX1114
  2. Weant, Jessica; Eveleth, David D.; Subramaniam, Amuthakannan; Jenkins-Eveleth, Jennifer; Blaber, Michael; Li, Ling; Ornitz, David M.; Alimardanov, Asaf; Broadt, Trevor; Dong, Hui; Vyas, Vinay; Yang, Xiaoyi; Bradshaw, Ralph A.
  3. Growth Factors. 2021, Dec 9;
  1. 16.   Considerations for a Reliable In Vitro Model of Chemotherapy-Induced Peripheral Neuropathy
  2. Eldridge, Sandy; Scuteri, Arianna; Jones, Eugenia M. C.; Cavaletti, Guido; Guo, Liang; Glaze, Elizabeth
  3. Toxics. 2021, Nov 11; 9(11):
  1. 17.   Paired heavy- and light-chain signatures contribute to potent SARS-CoV-2 neutralization in public antibody responses
  2. Banach, Bailey B.; Cerutti, Gabriele; Fahad, Ahmed S.; Shen, Chen-Hsiang; De Souza, Matheus Oliveira; Katsamba, Phinikoula S.; Tsybovsky, Yaroslav; Wang, Pengfei; Nair, Manoj S.; Huang, Yaoxing; Francino-Urdaniz, Irene M.; Steiner, Paul J.; Gutierrez-Gonzalez, Matias; Liu, Lihong; Acevedo, Sheila N. Lopez; Nazzari, Alexandra F.; Wolfe, Jacy R.; Luo, Yang; Olia, Adam S.; Teng, I-Ting; Yu, Jian; Zhou, Tongqing; Reddem, Eswar R.; Bimela, Jude; Pan, Xiaoli; Madan, Bharat; Laflin, Amy D.; Nimrania, Rajani; Yuen, Kwok-Yung; Whitehead, Timothy A.; Ho, David D.; Kwong, Peter D.; Shapiro, Lawrence; DeKosky, Brandon J.
  3. Cell Reports. 2021, Oct 5; 37(1):
  1. 18.   The Planarian Anatomy Ontology: A resource to connect data within and across experimental platforms
  2. Nowotarski, Stephanie H; Davies,Erin; Robb, Sofia M C; Ross, Eric J; Matentzoglu, Nicolas; Doddihal, Viraj; Mir, Mol; McClain, Melainia; Alvarado, Alejandro Sánchez
  3. Development (Cambridge, England). 2021, Aug 1; 148(15):
  1. 19.   Nanobodies from camelid mice and llamas neutralize SARS-CoV-2 variants
  2. Xu, Jianliang; Xu, Kai; Jung, Seolkyoung; Conte, Andrea; Lieberman, Jenna; Muecksch, Frauke; Lorenzi, Julio Cesar Cetrulo; Park, Solji; Schmidt, Fabian; Wang, Zijun; Huang, Yaoxing; Luo, Yang; Nair, Manoj S.; Wang, Pengfei; Schulz, Jonathan E.; Tessarollo,Lino; Bylund, Tatsiana; Chuang, Gwo-Yu; Olia, Adam S.; Stephens,Tyler; Teng, I-Ting; Tsybovsky,Yaroslav; Zhou, Tongqing; Munster, Vincent; Ho, David D.; Hatziioannou, Theodora; Bieniasz, Paul D.; Nussenzweig, Michel C.; Kwong, Peter D.; Casellas, Rafael
  3. Nature. 2021, Jul 8; 595(7866): 278-+.
  1. 20.   Structural basis of antifolate recognition and transport by PCFT
  2. Parker, Joanne L.; Deme,Justin; Kuteyi, Gabriel; Wu, Zhiyi; Huo, Jiandong; Goldman, I. David; Owens, Raymond J.; Biggin, Philip C.; Lea,Susan; Newstead, Simon
  3. Nature. 2021, Jul; 595(7865): 130-134.
  1. 21.   Federated learning improves site performance in multicenter deep learning without data sharing
  2. Sarma, Karthik; Harmon,Stephanie; Sanford, Thomas; Roth, Holger R.; Xu, Ziyue; Tetreault, Jesse; Xu, Daguang; Flores, Mona G.; Raman, Alex G.; Kulkarni, Rushikesh; Wood, Bradford J.; Choyke, Peter L.; Priester, Alan M.; Marks, Leonard S.; Raman, Steven S.; Enzmann, Dieter; Turkbey, Baris; Speier, William; Arnold, Corey W.
  3. Journal of the American Medical Informatics Association : JAMIA. 2021, Jun 12; 28(6): 1259-1264.
  1. 22.   An Unusual Pattern of Premature Cervical Spine Degeneration in STAT3-LOF
  2. Mitchell, Amelia L.; Urban,Amanda; Freeman, Alexandra F.; Hammoud, Dima A.
  3. Journal of clinical immunology. 2021, Apr; 41(3): 576-584.
  1. 23.   PDCD4 regulates axonal growth by translational repression of neurite growth-related genes and is modulated during nerve injury responses
  2. Di Paolo, Andres Pablo; Eastman, Guillermo; Mesquita Ribeiro, Raquel; Farias, Joaquina; Macklin, Andrew; Kislinger, Thomas; Colburn, Nancy; Munroe, David; Sotelo Sosa, Jose Roberto; Dajas Bailador, Federico; Sotelo Silveira, Jose Roberto
  3. RNA (New York, N.Y.). 2020, NOV; 26(11): 1637-+.
  1. 24.   Enhanced Co-Expression Extrapolation (COXEN) Gene Selection Method for Building Anti-Cancer Drug Response Prediction Models
  2. Zhu, Yitan; Brettin, Thomas; Evrard,Yvonne; Xia, Fangfang; Partin, Alexander; Shukla, Maulik; Yoo, Hyunseung; Doroshow, James H; Stevens, Rick L
  3. Genes. 2020, Sep 11; 11(9): pii: E1070.
  1. 25.   Identification and Structure of a Multidonor Class of Head-Directed Influenza-Neutralizing Antibodies Reveal the Mechanism for Its Recurrent Elicitation
  2. Cheung, Crystal Sao-Fong; Fruehwirth, Alexander; Paparoditis, Philipp Carl Georg; Shen, Chen-Hsiang; Foglierini, Mathilde; Joyce, M Gordon; Leung, Kwanyee; Piccoli, Luca; Rawi, Reda; Silacci-Fregni, Chiara; Tsybovsky,Yaroslav; Verardi, Raffaello; Wang, Lingshu; Wang, Shuishu; Yang, Eun Sung; Zhang, Baoshan; Zhang, Yi; Chuang, Gwo-Yu; Corti, Davide; Mascola, John R; Shapiro, Lawrence; Kwong, Peter D; Lanzavecchia, Antonio; Zhou, Tongqing
  3. Cell reports. 2020, Sep 01; 32(9): 108088.
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