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  1. 1.   Nano-mupirocin as tumor-targeted antibiotic: Physicochemical, immunotoxicological and pharmacokinetic characterization, and effect on gut microbiome
  2. Cern, Ahuva; Skoczen,Sarah; Snapp, Kelsie S; Hod, Atara; Zilbersheid, Daniel; Bavli, Yaelle; Alon-Maimon, Tamar; Bachrach, Gilad; Wei, Xiaohui; Berman, Bella; Yassour, Moran; Cedrone,Edward; Neun,Barry; Dobrovolskaia,Marina; Clogston,Jeffrey; Stern,Steve; Barenholz, Yechezkel
  3. Journal of Controlled Release : official journal of the Controlled Release Society. 2024, Aug 2; 373: 713-726.
  1. 2.   Systematic characterization of multi-omics landscape between gut microbial metabolites and GPCRome in Alzheimer's disease
  2. Qiu, Yunguang; Hou, Yuan; Gohel, Dhruv; Zhou, Yadi; Xu, Jielin; Bykova, Marina; Yang, Yuxin; Leverenz, James B; Pieper, Andrew A; Nussinov,Ruth; Caldwell, Jessica Z K; Brown, J Mark; Cheng, Feixiong
  3. Cell Reports. 2024, Apr 21; 43(5): 114128.
  1. 3.   Quantitative PET imaging of the CD4 pool in nonhuman primates
  2. Kim,Insook; Srinivasula,Sharat; DeGrange, Paula; Long, Brad; Jang,Hyukjin; Carrasquillo, Jorge A; Lane, H Clifford; Di Mascio, Michele
  3. European Journal of Nuclear Medicine and Molecular Imaging. 2022, Aug 27;
  1. 4.   Oral-Gut Microbiome Axis in Gastrointestinal Disease and Cancer
  2. Park, Se-Young; Hwang, Byeong-Oh; Lim, Mihwa; Ok, Seung-Ho; Lee, Sun-Kyoung; Chun, Kyung-Soo; Park, Kwang-Kyun; Hu,Yinling; Chung, Won-Yoon; Song, Na-Young
  3. Cancers. 2021, May; 13(9):
  1. 5.   Fecal microbiota transplant overcomes resistance to anti-PD-1 therapy in melanoma patients
  2. Davar, Diwakar; Dzutsev, Amiran K.; McCulloch, John A.; Rodrigues,Richard; Chauvin, Joe-Marc; Morrison, Robert M.; Deblasio, Richelle N.; Menna, Carmine; Ding, Quanquan; Pagliano, Ornella; Zidi, Bochra; Zhang, Shuowen; Badger, Jonathan H.; Vetizou, Marie; Cole, Alicia M.; Fernandes, Miriam R.; Prescott, Stephanie; Costa, Raquel G. F.; Balaji, Ascharya K.; Morgun, Andrey; Vujkovic-Cvijin, Ivan; Wang, Hong; Borhani, Amir A.; Schwartz, Marc B.; Dubner, Howard M.; Ernst, Scarlett J.; Rose, Amy; Najjar, Yana G.; Belkaid, Yasmine; Kirkwood, John M.; Trinchieri,Giorgio; Zarour, Hassane M.
  3. Science. 2021, Feb 5; 371(6529): 595-602.
  1. 6.   Cutaneous barrier leakage and gut inflammation drive skin disease in Omenn Syndrome
  2. Rigoni, Rosita; Fontana, Elena; Dobbs, Kerry; Marrella, Veronica; Taverniti, Valentina; Maina, Virginia; Facoetti, Amanda; D'Amico, Giovanna; Al-Herz, Waleed; Cruz-Munoz, Mario Ernesto; Schuetz, Catharina; Gennery, Andrew R; Garabedian, Elizabeth K; Giliani, Silvia; Draper, Deborah; Dbaibo, Ghassan; Geha, Raif S; Meyts, Isabelle; Tousseyn, Thomas; Neven, Benedicte; Moshous, Despina; Fischer, Alain; Schulz, Ansgar; Finocchi, Andrea; Kuhns,Doug; Fink,Dani; Lionakis, Michail S; Swamydas, Muthulekha; Guglielmetti, Simone; Alejo, Julie; Myles, Ian A; Pittaluga, Stefania; Notarangelo, Luigi D; Villa, Anna; Cassani, Barbara
  3. The Journal of allergy and clinical immunology. 2020, NOV; 146(5): 1165-+.
  1. 7.   Conventional Co-Housing Modulates Murine Gut Microbiota and Hematopoietic Gene Expression
  2. Chen, Jichun; Zhang, Shuling; Feng, Xingmin; Wu, Zhijie; Dubois, Wendy; Thovarai,Vishal; Ahluwalia, Sonia; Gao, Shouguo; Chen, Jinguo; Peat, Tyler; Sen,Shurjo; Trinchieri, Giorgio; Young, Neal S; Mock, Beverly A
  3. International journal of molecular sciences. 2020, SEP; 21(17):
  1. 8.   The Gut Microbiome and Xenobiotics: Identifying Knowledge Gaps
  2. Sutherland, Vicki L; McQueen, Charlene A; Mendrick, Donna; Gulezian, Donna; Cerniglia, Carl; Foley, Steven; Forry, Sam; Khare, Sangeeta; Liang, Xue; Manautou, Jose E; Tweedie, Donald; Young,Howard; Alekseyenko, Alexander V; Burns, Frank; Dietert, Rod; Wilson, Alan; Chen, Connie
  3. Toxicological sciences : an official journal of the Society of Toxicology. 2020, Jul 01; 176(1): 1-10.
  1. 9.   Multi-omics: Differential expression of IFN-? results in distinctive mechanistic features linking chronic inflammation, gut dysbiosis, and autoimmune diseases
  2. Bae,Heekyong; Leung, Patrick S C; Hodge, Deborah L; Fenimore,John; Jeon, Seon-Min; Thovarai,Vishal; Dzutsev,Amiran; Welcher, Andrew A; Boedigheimer, Michael; Damore, Michael A; Choi, Myung-Sook; Fravell, Richard A; Trinchieri,Giorgio; Gershwin, M Eric; Young,Howard
  3. Journal of autoimmunity. 2020, JUL; 111: 102436.
  1. 10.   A dorsal-ventral gradient of Wnt3a/ß-catenin signals control hindgut extension and colon formation
  2. Garriock,Robert; Chalamalasetty,Ravindra Babu; Zhu,Jianjian; Kennedy, Mark W; Kumar,Amit; Mackem,Susan; Yamaguchi,Terry
  3. Development (Cambridge, England). 2020, APR; 147(8):
  1. 11.   Attenuation of immune-mediated bone marrow damage in conventionally housed mice
  2. Li, Jun; Dubois, Wendy; Thovarai,Vishal; Wu, Zhijie; Feng, Xingmin; Peat, Tyler; Zhang, Shuling; Sen,Shurjo; Trinchieri,Giorgio; Chen, Jichun; Mock, Beverly A; Young, Neal S
  3. Molecular carcinogenesis. 2020, Feb; 59(2): 237-245.
  1. 12.   Signatures of oral microbiome in HIV-infected individuals with oral Kaposi's sarcoma and cell-associated KSHV DNA
  2. Gruffaz, Marion; Zhang, Tinghe; Marshall,Vickie; Gonçalves, Priscila; Ramaswami, Ramya; Labo,Nazzarena; Whitby,Denise; Uldrick, Thomas S; Yarchoan, Robert; Huang, Yufei; Gao, Shou-Jiang
  3. PLoS pathogens. 2020, Jan 17; 16(1): e1008114.
  1. 13.   Knockout of the non-essential gene SUGCT creates diet-linked, age-related microbiome disbalance with a diabetes-like metabolic syndrome phenotype
  2. Niska-Blakie, Joanna; Gopinathan, Lakshmi; Low, Kia Ngee; Kien, Yang Lay; Goh, Christine M F; Caldez, Matias J; Pfeiffenberger, Elisabeth; Jones, Oliver S; Ong, Chee Bing; Kurochkin, Igor V; Coppola, Vincenzo; Tessarollo,Lino; Choi, Hyungwon; Kanagasundaram, Yoganathan; Eisenhaber, Frank; Maurer-Stroh, Sebastian; Kaldis, Philipp
  3. Cellular and molecular life sciences : CMLS. 2019, Nov 13;
  1. 14.   Kynurenine 3-Monooxygenase Inhibition during Acute Simian Immunodeficiency Virus Infection Lowers PD-1 Expression and Improves Post-Combination Antiretroviral Therapy CD4+ T Cell Counts and Body Weight
  2. Swainson, Louise A; Ahn, Haelee; Pajanirassa, Priya; Khetarpal, Vinod; Deleage,Claire; Estes,Jake; Hunt, Peter W; Munoz-Sanjuan, Ignacio; McCune, Joseph M
  3. Journal of immunology (Baltimore, Md. : 1950). 2019, AUG 15; 203(4): 899-910.
  1. 15.   Bacterial Translocation and Risk of Liver Cancer in a Finnish Cohort
  2. Yang, Baiyu; Petrick, Jessica L.; Thistle, Jake E.; Pinto,Ligia; Kemp,Troy; Gewirtz, Andrew T.; Waterboer, Tim; Fedirko, Veronika; Jenab, Mazda; Graubard, Barry I.; Weinstein, Stephanie J.; Albanes, Demetrius; McGlynn, Katherine A.
  3. CANCER EPIDEMIOLOGY BIOMARKERS & PREVENTION. 2019, Apr; 28(4): 807-813.
  1. 16.   Intestinal non-canonical NF kappa B signaling shapes the local and systemic immune response
  2. Ramakrishnan, Sadeesh K.; Zhang, Huabing; Ma, Xiaoya; Jung, Inkyung; Schwartz, Andrew J.; Triner, Daniel; Devenport, Samantha N.; Das, Nupur K.; Xue, Xiang; Zeng, Melody Y.; Hu,Yinling; Mortensen, Richard M.; Greenson, Joel K.; Cascalho, Marilia; Wobus, Christiane E.; Colacino, Justin A.; Nunez, Gabriel; Rui, Liangyou; Shah, Yatrik M.
  3. Nature communications. 2019, Feb 8; 10(1):
  1. 17.   An Interleukin-23-Interleukin-22 Axis Regulates Intestinal Microbial Homeostasis to Protect from Diet-Induced Atherosclerosis
  2. Fatkhullina, Aliia R.; Peshkova, Iuliia O.; Dzutsev, Amiran; Aghayev, Turan; McCulloch, John A.; Thovarai,Vishal; Badger, Jonathan H.; Vats, Ravi; Sundd, Prithu; Tang, Hsin-Yao; Kossenkov, Andrew V.; Hazen, Stanley L.; Trinchieri, Giorgio; Grivennikov, Sergei I.; Koltsova, Ekaterina K.
  3. Immunity. 2018, NOV 20; 49(5): 943-+.
  1. 18.   Structural host- microbiota interaction networks
  2. Guven-Maiorov, Emine; Tsai, Chung-Jung; Nussinov, Ruth
  3. PLOS COMPUTATIONAL BIOLOGY. 2017, OCT; 13(10):
  1. 19.   How can computation advance microbiome research?
  2. Nussinov, Ruth; Papin, Jason A.
  3. PLOS COMPUTATIONAL BIOLOGY. 2017, Sep; 13(9):
  1. 20.   Changes in intestinal microbiota composition and metabolism coincide with increased intestinal permeability in young adults under prolonged physiologic stress
  2. Karl, J Philip; Margolis, Lee M; Madslien, Elisabeth H; Murphy, Nancy E; Castellani, John W; Gundersen, Yngvar; Hoke, Allison V; Levangie, Michael W; Kumar, Raina; Chakraborty, Nabarun; Gautam, Aarti; Hammamieh, Rasha; Martini, Svein; Montain, Scott J; Pasiakos, Stefan M
  3. American Journal of Physiology. Gastrointestinal and Liver Physiology. 2017, Jun; 312(6): G559-G571.
  1. 21.   Increased Intestinal Permeability Correlates with Sigmoid Mucosa alpha-Synuclein Staining and Endotoxin Exposure Markers in Early Parkinson's Disease
  2. Forsyth, C. B.; Shannon, K. M.; Kordower, J. H.; Voigt, R. M.; Shaikh, M.; Jaglin, J. A.; Estes, J. D.; Dodiya, H. B.; Keshavarzian, A.
  3. Plos One. 2011, Dec; 6(12):
  1. 22.   The adult Drosophila gastric and stomach organs are maintained by a multipotent stem cell pool at the foregut/midgut junction in the cardia (proventriculus)
  2. Singh, R.; Zeng, X. K.; Zheng, Z. Y.; Hou, S. X.
  3. Cell Cycle. 2011, Apr; 10(7): 1109-1120.
  1. 23.   JAK-STAT Is Restrained by Notch to Control Cell Proliferation of the Drosophila Intestinal Stem Cells
  2. Liu, W.; Singh, S. R.; Hou, S. X.
  3. Journal of Cellular Biochemistry. 2010, Apr; 109(5): 992-999.
  1. 24.   Wnt5a is essential for intestinal elongation in mice
  2. Cervantes, S.; Yamaguchi, T. P.; Hebrok, M.
  3. Developmental Biology. 2009 326(2): 285-294.
  1. 25.   Anti-retroviral therapy fails to restore the severe Th-17: Tc-17 imbalance observed in peripheral blood during simian immunodeficiency virus infection
  2. Kader, M.; Bixler, S.; Piatak, M.; Lifson, J.; Mattapallil, J. J.
  3. Journal of Medical Primatology. 2009 38: 32-38.
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