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  1. 1.   The effect of turn residues on the folding and cell-penetrating activity of beta-hairpin peptides and applications toward protein delivery
  2. Miller,Stephen; Schneider,Joel
  3. PEPTIDE SCIENCE. 2020, JAN; 112(SI 1):
  1. 2.   Self assembled bi-functional peptide hydrogels with biomineralization-directing peptides
  2. Gungormus, M.; Branco, M.; Fong, H.; Schneider, J. P.; Tamerler, C.; Sarikaya, M.
  3. Biomaterials. 2010, Oct; 31(28): 7266-7274.
  1. 3.   Coarse-graining RNA nanostructures for molecular dynamics simulations
  2. Paliy, M.; Melnik, R.; Shapiro, B. A.
  3. Physical Biology. 2010, Sep; 7(3): 12.
  1. 4.   Delineation of the Preferences and Requirements of the Human Immunodeficiency Virus Type 1 Dimerization Initiation Signal by Using an In Vivo Cell-Based Selection Approach
  2. Hussein, I. T. M.; Ni, N.; Galli, A.; Chen, J. B.; Moore, M. D.; Hu, W. S.
  3. Journal of Virology. 2010, Jul; 84(13): 6866-6875.
  1. 5.   Resonance Assignment and Three-Dimensional Structure Determination of a Human alpha-Defensin, HNP-1, by Solid-State NMR
  2. Zhang, Y.; Doherty, T.; Li, J.; Lu, W. Y.; Barinka, C.; Lubkowski, J.; Hong, M.
  3. Journal of Molecular Biology. 2010, Mar; 397(2): 408-422.
  1. 6.   Synthesis and Hybridization Properties of Modified Oligodeoxynucleotides Carrying Non-Natural Bases
  2. Avino, A.; Perez-Rentero, S.; Garibotti, A. V.; Siddiqui, M. A.; Marquez, V. E.; Eritja, R.
  3. Chemistry & Biodiversity. 2009 6(2): 117-126.
  1. 7.   Models of Toxic beta-Sheet Channels of Protegrin-1 Suggest a Common Subunit Organization Motif Shared with Toxic Alzheimer beta-Amyloid Ion Channels
  2. Jang, H.; Ma, B.; Lal, R.; Nussinov, R.
  3. Biophysical Journal. 2008 95(10): 4631-4642.
  1. 8.   Testing beta-helix terminal coils stability by targeted substitutions with non-proteogenic amino acids: A molecular dynamics study
  2. Zanuy, D.; Rodriguez-Ropero, F.; Nussinov, R.; Aleman, C.
  3. Journal of Structural Biology. 2007, Nov; 160(2): 177-189.
  1. 9.   Molecular mechanisms of simian immunodeficiency virus SIVagm RNA encapsidation
  2. Fu, W.; Prasad, V.; Chen, J. B.; Nikolaitchik, O.; Hu, W. S.
  3. Virology. 2007, Jun; 363(1): 210-219.
  1. 10.   Hairpin- and cruciform-mediated chromosome breakage: causes and consequences in eukaryotic cells
  2. Lobachev, K. S.; Rattray, A.; Narayanan, V.
  3. Frontiers in Bioscience. 2007, May; 12: 4208-4220.
  1. 11.   Conformational study of the protegrin-I (PG-I) dimer interaction with lipid bilayers and its effect
  2. Jang, H.; Ma, B. Y.; Nussinov, R.
  3. Bmc Structural Biology. 2007, Apr; 7
  1. 12.   Structural differentiation of the HIV-1 poly(A) signals
  2. Gee, A. H.; Kasprzak, W.; Shapiro, B. A.
  3. Journal of Biomolecular Structure & Dynamics. 2006, FEB; 23(4): 417-428.
  1. 13.   Sox4 cooperates with Evi1 in AKXD-23 myeloid tumors via transactivation of proviral LTR
  2. Boyd, K. E.; Xiao, Y. Y.; Fan, K.; Poholek, A.; Copeland, N. G.; Jenkins, N. A.; Perkins, A. S.
  3. Blood. 2006, JAN 15; 107(2): 733-741.
  1. 14.   Energy landscape of amyloidogenic peptide oligomerization by parallel-tempering molecular dynamics simulation: Significant role of Asn ladder
  2. Tsai, H. H.; Reches, M.; Tsai, C. J.; Gunasekaran, K.; Gazit, E.; Nussinov, R.
  3. Proceedings of the National Academy of Sciences of the United States of America. 2005, JUN 7; 102(23): 8174-8179.
  1. 15.   Specific interactions between HIV-1 nucleocapsid protein and the TAR element
  2. Kanevsky, I.; Chaminade, F.; Ficheux, D.; Moumen, A.; Gorelick, R.; Negroni, M.; Darlix, J. L.; Fosse, P.
  3. Journal of Molecular Biology. 2005, MAY 20; 348(5): 1059-1077.
  1. 16.   Dynamic behavior of the telomerase RNA hairpin structure and its relationship to dyskeratosis congenita
  2. Yingling, Y. G.; Shapiro, B. A.
  3. Journal of Molecular Biology. 2005, APR 22; 348(1): 27-42.
  1. 17.   A method for cloning and sequencing long palindromic DNA junctions
  2. Rattray, A. J.
  3. Nucleic Acids Research. 2004, NOV 8; 32(19): published online-published online.
  1. 18.   Intraspecific mating with CzechII/Ei mice rescue lethality associated with loss of function mutations of the imprinted genes, Igf2r and Cdkn1c
  2. Hagan, J. P.; Kozlov, S. V.; Chiang, Y. S.; Sewell, L.; Stewart, C. L.
  3. Genomics. 2004, NOV; 84(5): 836-843.
  1. 19.   Silencing the formylpeptide receptor FPR by short-interfering RNA
  2. Le, Y. Y.; Iribarren, P.; Zhou, Y.; Gong, W. H.; Hu, J. Y.; Zhang, X.; Wang, J. M.
  3. Molecular Pharmacology. 2004, OCT; 66(4): 1022-1028.
  1. 20.   Solution structure of the pseudo-5 ' splice site of a retroviral splicing suppressor
  2. Cabello-Villegas, J.; Giles, K. E.; Soto, A. M.; Yu, P.; Mougin, A.; Beemon, K. L.; Wang, Y. X.
  3. Rna-a Publication of the Rna Society. 2004, SEP; 10(9): 1388-1398.
  1. 21.   Effects of the Delta 67 complex of mutations in human immunodeficiency virus type 1 reverse transcriptase on nucleoside analog excision
  2. Boyer, P. L.; Imamichi, T.; Sarafianos, S. G.; Arnold, E.; Hughes, S. H.
  3. Journal of Virology. 2004, SEP; 78(18): 9987-9997.
  1. 22.   De novo design and characterization of a helical hairpin eicosapeptide: Emergence of an anion receptor in the linker region
  2. Rudresh; Ramakumar, S.; Ramagopal, U. A.; Inai, Y.; Goel, S.; Sahal, D.
  3. Structure. 2004 12(3): 389-396.
  1. 23.   The C- and the N-terminal regions of glycoprotein 41 ectodomain fuse membranes enriched and not enriched with cholesterol, respectively
  2. Shnaper, S.; Sackett, K.; Gallo, S. A.; Blumenthal, R.; Shai, Y.
  3. Journal of Biological Chemistry. 2004 279(18): 18526-18534.
  1. 24.   Energy landscape and dynamics of the beta-hairpin G peptide and its isomers: Topology and sequences
  2. Ma, B. Y.; Nussinov, R.
  3. Protein Science. 2003 12(9): 1882-1893.
  1. 25.   Shortening of RNA : DNA hybrid in the elongation complex of RNA polymerase is a prerequisite for transcription termination
  2. Komissarova, N.; Becker, J.; Solter, S.; Kireeva, M.; Kashlev, M.
  3. Molecular Cell. 2002 10(5): 1151-1162.
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