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  1. 1.   Modeling and Analysis of HIV-1 Pol Polyprotein as a Case Study for Predicting Large Polyprotein Structures
  2. Hao,Ming; Imamichi,Tomozumi; Chang,Weizhong
  3. International Journal of Molecular Sciences. 2024, Feb 02; 25(3):
  1. 2.   CRISPR-targeted MAGT1 insertion restores XMEN patient hematopoietic stem cells and lymphocytes
  2. Brault, Julie; Liu, Taylor; Bello, Ezekiel; Liu, Siyuan; Sweeney, Colin L.; Meis, Ronald J.; Koontz, Sherry; Corsino, Cristina; Choi, Uimook; Vayssiere, Guillaume; Bosticardo, Marita; Dowdell, Kennichi; Lazzarotto, Cicera R.; Clark, Aaron B.; Notarangelo, Luigi D.; Ravell, Juan C.; Lenardo, Michael J.; Kleinstiver, Benjamin P.; Tsai, Shengdar Q.; Wu, Xiaolin; Dahl, Gary A.; Malech, Harry L.; De Ravin, Suk See
  3. Blood. 2021, Dec 30; 138(26): 2768-2780.
  1. 3.   Profiling SARS-CoV-2 HLA-I peptidome reveals T cell epitopes from out-of-frame ORFs
  2. Weingarten-Gabbay, Shira; Klaeger, Susan; Sarkizova, Siranush; Pearlman, Leah R.; Chen, Da-Yuan; Gallagher, Kathleen M. E.; Bauer, Matthew R.; Taylor, Hannah B.; Dunn, W. Augustine; Tarr, Christina; Sidney, John; Rachimi, Suzanna; Conway, Hasahn L.; Katsis, Katelin; Wang, Yuntong; Leistritz-Edwards, Del; Durkin, Melissa R.; Tomkins-Tinch, Christopher H.; Finkel, Yaara; Nachshon, Aharon; Gentili, Matteo; Rivera, Keith D.; Carulli, Isabel P.; Chea, Vipheaviny A.; Chandrashekar, Abishek; Bozkus, Cansu Cimen; Carrington,Mary; Bhardwaj, Nina; Barouch, Dan H.; Sette, Alessandro; Maus, Marcela; Rice, Charles M.; Clauser, Karl R.; Keskin, Derin B.; Pregibon, Daniel C.; Hacohen, Nir; Carr, Steven A.; Abelin, Jennifer G.; Saeed, Mohsan; Sabeti, Pardis C.
  3. CELL. 2021, Jul 22; 184(15): 3962-3980.e17.
  1. 4.   The epigenetic regulator LSH maintains fork protection and genomic stability via MacroH2A deposition and RAD51 filament formation
  2. Xu,Xiaoping; Ni, Kai; He,Yafeng; Ren, Jianke; Sun, Chongkui; Liu, Yie; Aladjem, Mirit; Burkett, Sandra; Finney, Richard; Ding, Xia; Sharan,Shyam; Muegge,Kathrin
  3. Nature communications. 2021, Jun 10; 12(1):
  1. 5.   A computational model for classification of BRCA2 variants using mouse embryonic stem cell-based functional assays
  2. Biswas,Kajal; Lipton, Gary B; Stauffer,Stacey; Sullivan,Teresa; Cleveland, Linda; Southon,Eileen; Reid,Susan; Magidson,Valentin; Iversen, Edwin S; Sharan,Shyam
  3. NPJ genomic medicine. 2020, Dec 08; 5(1): 52.
  1. 6.   Interaction of the N terminus of ADP-ribosylation factor with the PH domain of the GTPase-activating protein ASAP1 requires phosphatidylinositol 4,5-bisphosphate
  2. Roy, Neeladri Sekhar; Jian, Xiaoying; Soubias,Olivier; Zhai, Peng; Hall, Jessica R.; Dagher, Jessica N.; Coussens, Nathan P.; Jenkins, Lisa M.; Luo, Ruibai; Akpan, Itoro O.; Hall, Matthew D.; Byrd,Robert; Yohe, Marielle E.; Randazzo, Paul A.
  3. JOURNAL OF BIOLOGICAL CHEMISTRY. 2019, NOV 15; 294(46): 17354-17370.
  1. 7.   Pillars Article: Purification of a human monocyte-derived neutrophil chemotactic factor that has peptide sequence similarity to other host defense cytokines. Proc. Natl. Acad. Sci. USA 1987. 84: 9233-9237.
  2. Yoshimura, Teizo; Matsushima, Kouji; Tanaka, Shuji; Robinson, Elizabeth A.; Appella, Ettore; Oppenheim, Joost; Leonard, Edward J.
  3. JOURNAL OF IMMUNOLOGY. 2019, Jan 1; 202(1): 5-9.
  1. 8.   Antiviral activity of alpha-helical stapled peptides designed from the HIV-1 capsid dimerization domain
  2. Zhang, H. T.; Curreli, F.; Zhang, X. H.; Bhattacharya, S.; Waheed, A. A.; Cooper, A.; Cowburn, D.; Freed, E. O.; Debnath, A. K.
  3. Retrovirology. 2011, May; 8: 18.
  1. 9.   Identifying and characterizing recently transmitted viruses
  2. Keele, B. F.
  3. Current opinion in HIV and AIDS. 2010, Jul; 5(4): 327-34.
  1. 10.   Gene targeting in mouse embryonic stem cells
  2. Tessarollo, L.; Palko, M. E.; Akagi, K.; Coppola, V.
  3. Methods in molecular biology (Clifton, N.J.). 2009 530: 141-164.
  1. 11.   Phosphatidylinositol ether lipid analogues that inhibit AKT also independently activate the stress kinase, p38 alpha, through MKK3/6-independent and -dependent mechanisms
  2. Gills, J. J.; Castillo, S. S.; Zhang, C. Y.; Petukhov, P. A.; Memmott, R. M.; Hollingshead, M.; Warfel, N.; Han, J. H.; Kozikowski, A. P.; Dennis, P. A.
  3. Journal of Biological Chemistry. 2007, Sep; 282(37): 27020-27029.
  1. 12.   Ty3 capsid mutations reveal early and late functions of the amino-terminal domainv
  2. Larsen, L. S. Z.; Zhang, M.; Beliakova-Bethell, N.; Bilanchone, V.; Lamsa, A.; Nagashima, K.; Najdi, R.; Kosaka, K.; Kovacevic, V.; Cheng, J.; Baldi, P.; Hatfield, G. W.; S, meyer
  3. Journal of Virology. 2007, Jul; 81(13): 6957-6972.
  1. 13.   Calorimetric investigation of phosphorylated and non-phosphorylated peptide ligand binding to the human Grb7-SH2 domain
  2. Spuches, A. M.; Argiros, H. J.; Lee, K. H.; Haas, L. L.; Perch, S. C.; Krag, D. N.; Roller, P. P.; Wilcox, D. E.; Lyons, B. A.
  3. Journal of Molecular Recognition. 2007, Jul-Aug; 20(4): 245-252.
  1. 14.   Homology model of RSK2 N-terminal kinase domain, structure-based identification of novel RSK2 inhibitors, and preliminary common pharmacophore
  2. Nguyen, T. L.; Gussio, R.; Smith, J. A.; Lannigan, D. A.; Hecht, S. M.; Scudiero, D. A.; Shoemaker, R. H.; Zaharevitz, D. W.
  3. Bioorganic & Medicinal Chemistry. 2006, Sep; 14(17): 6097-6105.
  1. 15.   Development of Grb2 SH2 domain signaling antagonists: A potential new class of antiproliferative agents
  2. Burke, T. R.
  3. International Journal of Peptide Research and Therapeutics. 2006, Mar; 12(1): 33-48.
  1. 16.   Effects of Gag mutation and processing on retroviral dimeric RNA maturation
  2. Fu, W.; Dang, Q.; Nagashima, K.; Freed, E. O.; Pathak, V. K.; Hu, W. S.
  3. Journal of Virology. 2006, FEB; 80(3): 1242-1249.
  1. 17.   Antibody response to a non-conserved C-terminal part of human histone deacetylase 3 in colon cancer patients
  2. Shebzukhov, Y. V.; Koroleva, E. P.; Khlgatian, S. V.; Belousov, P. V.; Kuz'mina, K. E.; Radko, B. V.; Longpre, F.; Lagarkova, M. A.; Kadachigova, T. S.; Gurova, O. V.; Meshcheryakov, A. A.; Lichinitser, M. R.; Knuth, A.; Jager, E.; Kuprash, D. V.; Nedospasov, S. A.
  3. International Journal of Cancer. 2005, DEC 10; 117(5): 800-806.
  1. 18.   Multifunctional roles of the conserved arg residues in the second region of homology of p97/valosin-containing protein
  2. Wang, Q.; Song, C. C.; Irizarry, L.; Dai, R. M.; Zhang, X. D.; Li, C. C. H.
  3. Journal of Biological Chemistry. 2005, DEC 9; 280(49): 40515-40523.
  1. 19.   Crystal structure of the N-terminal domain of E-coli Lon protease
  2. Li, M.; Rasulova, F.; Melnikov, E. E.; Rotanova, T. V.; Gustchina, A.; Maurizi, M. R.; Wlodawer, A.
  3. Protein Science. 2005, NOV; 14(11): 2895-2900.
  1. 20.   Cockroach allergen Bla g 2: An unusual aspartic proteinase
  2. Wunschmann, S.; Gustchina, A.; Chapman, M. D.; Pomes, A.
  3. Journal of Allergy and Clinical Immunology. 2005, JUL; 116(1): 140-145.
  1. 21.   Phosphorylation of Ser(24) in the pleckstrin homology domain of insulin receptor substrate-1 by mouse Pelle-like kinase/interleukin-1 receptor-associated kinase - Cross-talk between inflammatory signaling and insulin signaling that may contribute to insulin resistance
  2. Kim, J. A.; Yeh, D. C.; Ver, M.; Li, Y. H.; Carranza, A.; Conrads, T. P.; Veenstra, T. D.; Harrington, M. A.; Quon, M. J.
  3. Journal of Biological Chemistry. 2005, JUN 17; 280(24): 23173-23183.
  1. 22.   Prediction of multimolecular assemblies by multiple docking
  2. Inbar, Y.; Benyamini, H.; Nussinov, R.; Wolfson, H. J.
  3. Journal of Molecular Biology. 2005, JUN 3; 349(2): 435-447.
  1. 23.   Substrate specificity of the human protein phosphatase 2C delta Wip1
  2. Yamaguchi, H.; Minopoli, G.; Demidov, O. N.; Chatterjee, D. K.; Anderson, C. W.; Durell, S. R.; Appella, E.
  3. Biochemistry. 2005, APR 12; 44(14): 5285-5294.
  1. 24.   Association of Ebola virus matrix protein VP40 with microtubules
  2. Ruthel, G.; Demmin, G. L.; Kallstrom, G.; Javid, M. P.; Badie, S. S.; Will, A. B.; Nelle, T.; Schokman, R.; Nguyen, T. L.; Carra, J. H.; Bavari, S.; Aman, M. J.
  3. Journal of Virology. 2005, APR; 79(8): 4709-4719.
  1. 25.   Homology model of the CDK1/cyclin B complex
  2. McGrath, C. F.; Pattabiraman, N.; Kellogg, G. E.; Lemcke, T.; Kunick, C.; Sausville, E. A.; Zaharevitz, D. W.; Gussio, R.
  3. Journal of Biomolecular Structure & Dynamics. 2005, APR; 22(5): 493-502.
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