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  1. 1.   Protein-protein interactions: organization, cooperativity and mapping in a bottom-up Systems Biology approach
  2. Keskin, O.; Ma, B. Y.; Rogale, K.; Gunasekaran, K.; Nussinov, R.
  3. Physical Biology. 2005, JUN; 2(2): S24-S35.
  1. 2.   The linkage disequilibrium maps of three human chromosomes across four populations reflect their demographic history and a common underlying recombination pattern
  2. De La Vega, F. M.; Isaac, H.; Collins, A.; Scafe, C. R.; Halldorsson, B. V.; Su, X. P.; Lippert, R. A.; Wang, Y.; Laig-Webster, M.; Koehler, R. T.; Ziegle, J. S.; Wogan, L. T.; Stevens, J. F.; Leinen, K. M.; Olson, S. J.; Guegler, K. J.; You, X. Q.; Xu, L. H.; Hemken, H. G.; Kalush, F.; Itakura, M.; Zheng, Y.; de The, G.; O'Brien, S. J.; Clark, A. G.; Istrail, S.; Hunkapiller, M. W.; Spier, E. G.; Gilbert, D. A.
  3. Genome Research. 2005, APR; 15(4): 454-462.
  1. 3.   Comparison of the protein-protein interfaces in the p53-DNA crystal structures: Towards elucidation of the biological interface
  2. Ma, B. Y.; Pan, Y. P.; Gunasekaran, K.; Venkataraghavan, R. B.; Levine, A. J.; Nussinov, R.
  3. Proceedings of the National Academy of Sciences of the United States of America. 2005, MAR 15; 102(11): 3988-3993.
  1. 4.   Large-scale molecular characterization of adeno-associated virus vector integration in mouse liver
  2. Nakai, H.; Wu, X. L.; Fuess, S.; Storm, T. A.; Munroe, D.; Montini, E.; Burgess, S. M.; Grompe, M.; Kay, M. A.
  3. Journal of Virology. 2005, MAR; 79(6): 3606-3614.
  1. 5.   How similar are protein folding and protein binding nuclei? Examination of vibrational motions of energy hot spots and conserved residues
  2. Haliloglu, T.; Keskin, O.; Ma, B. Y.; Nussinov, R.
  3. Biophysical Journal. 2005, MAR; 88(3): 1552-1559.
  1. 6.   Magnitude of the hydrophobic effect at central versus peripheral sites in protein-protein interfaces
  2. Li, Y. L.; Huang, Y. P.; Swaminathan, C. P.; Smith-Gill, S. J.; Mariuzza, R. A.
  3. Structure. 2005, FEB; 13(2): 297-307.
  1. 7.   Protein-protein interactions: Hot spots and structurally conserved residues often locate in complemented pockets that pre-organized in the unbound states: Implications for docking
  2. Li, X.; Keskin, O.; Ma, B. Y.; Nussinov, R.; Liang, J.
  3. Journal of Molecular Biology. 2004, NOV 26; 344(3): 781-795.
  1. 8.   Interfacial pockets, structurally conserved residues, and energetic hot spots in protein-protein interactions
  2. Li, X.; Keskin, O.; Ma, B. Y.; Nussinov, R.; Liang, J.
  3. Biophysical Journal. 2004 86(1, Part 2 Suppl. S): 301A-301A.
  1. 9.   Protein-protein interactions: Coupling of structurally conserved residues and of hot spots across interfaces. implications for docking
  2. Halperin, I.; Wolfson, H.; Nussinov, R.
  3. Structure. 2004 12(6): 1027-1038.
  1. 10.   Protein-protein interactions: Structurally conserved residues distinguish between binding sites and exposed protein surfaces
  2. Ma, B. Y.; Elkayam, T.; Wolfson, H.; Nussinov, R.
  3. Proceedings of the National Academy of Sciences of the United States of America. 2003 100(10): 5772-5777.
  1. 11.   Conservation of polar residues as hot spots at protein interfaces
  2. Hu, Z. J.; Ma, B. Y.; Wolfson, H.; Nussinov, R.
  3. Proteins: Structure, Function, & Genetics. 2000 39(4): 331-342.
  1. 12.   Methods for Discovering and Targeting Druggable Protein-Protein Interfaces and Their Application to Repurposing
  2. Ozdemir, E Sila; Halakou, Farideh; Nussinov, Ruth; Gursoy, Attila; Keskin, Ozlem
  3. Methods in molecular biology (Clifton, N.J.). 2019 1903: 1-21.
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