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  1. 1.   Viral Burden and Illness Severity During Acute SARS-CoV-2 Infection Predict Persistent Long COVID Symptoms
  2. Brandstetter Figueroa, Elisabeth; Frosch, Anne E P; Burrack, Kristina S; Dileepan, Gayathri; Goldsmith, Rachael; Harris, Morgan; Ikeogu, Nwando; Jibrell, Hodan; Thayalan, Sangeitha; Dewar,Robin; Shenoy, Chetan; Sereti, Irini; Baker, Jason V
  3. Open Forum Infectious Diseases. 2025, Feb; 12(2): ofaf048.
  1. 2.   Insights into biofilm architecture and maturation enable improved clinical strategies for exopolysaccharide-targeting therapeutics
  2. Temme,Joel; Tan, Zibin; Li,Mi; Yang,Mo; Wlodawer,Alexander; Huang, Xuefei; Schneekloth,Jay; Gildersleeve,Jeffrey
  3. Cell Chemical Biology. 2024, Dec 02;
  1. 3.   Tissue-Specific DNA Methylation Changes in CD8+ T Cells During Chronic Simian Immunodeficiency Virus Infection of Infant Rhesus Macaques
  2. Nag,Mukta; Fogle, Jonathan E; Pillay, Santhoshan; Del Prete,Greg; De Paris, Kristina
  3. Viruses. 2024, Nov 27; 16(12):
  1. 4.   Potent and broad HIV-1 neutralization in fusion peptide-primed SHIV-infected macaques
  2. Wang, Hua; Cheng, Cheng; Dal Santo, James L; Shen, Chen-Hsiang; Bylund, Tatsiana; Henry, Amy R; Howe, Colin A; Hwang, Juyun; Morano, Nicholas C; Morris, Daniel J; Pletnev, Sergei; Roark, Ryan S; Zhou, Tongqing; Hansen, Bryan T; Hoyt, Forrest H; Johnston, Timothy S; Wang, Shuyi; Zhang, Baoshan; Ambrozak, David R; Becker, Jordan E; Bender, Michael F; Changela, Anita; Chaudhary, Ridhi; Corcoran, Martin; Corrigan, Angela R; Foulds, Kathryn E; Guo, Yicheng; Lee, Myungjin; Li, Yingying; Lin, Bob C; Liu, Tracy; Louder, Mark K; Mandolesi, Marco; Mason, Rosemarie D; McKee, Krisha; Nair, Vinod; O'Dell, Sijy; Olia, Adam S; Ou, Li; Pegu, Amarendra; Raju, Nagarajan; Rawi, Reda; Roberts-Torres, Jesmine; Sarfo, Edward K; Sastry, Mallika; Schaub, Andrew J; Schmidt, Stephen D; Schramm, Chaim A; Schwartz, Cindi L; Smith, Sarah C; Stephens,Tyler; Stuckey, Jonathan; Teng, I-Ting; Todd, John-Paul; Tsybovsky,Yaroslav; Van Wazer, David J; Wang, Shuishu; Doria-Rose, Nicole A; Fischer, Elizabeth R; Georgiev, Ivelin S; Karlsson Hedestam, Gunilla B; Sheng, Zizhang; Woodward, Ruth A; Douek, Daniel C; Koup, Richard A; Pierson, Theodore C; Shapiro, Lawrence; Shaw, George M; Mascola, John R; Kwong, Peter D
  3. Cell. 2024, Oct 23;
  1. 5.   Chlorophyll Derivatives Exert Greater Potency Over Progesterone in the Prevention of Infection-Induced Preterm Birth in Murine Models
  2. Uchendu, Adaeze P; Omogbai, Eric K; Obarisiagbon, Philip A; Omogiade, Uyi G; Bafor,Enitome
  3. American Journal of Reproductive Immunology (New York, N.Y. : 1989). 2024, Oct; 92(4): e70000.
  1. 6.   The Impact of SIV-Induced Immunodeficiency on SARS-CoV-2 Disease, Viral Dynamics, and Antiviral Immune Response in a Nonhuman Primate Model of Coinfection
  2. Melton, Alexandra; Rowe, Lori A; Penney, Toni; Krzykwa, Clara; Goff, Kelly; Scheuermann, Sarah E; Melton, Hunter J; Williams, Kelsey; Golden, Nadia; Green, Kristyn Moore; Smith, Brandon; Russell-Lodrigue, Kasi; Dufour, Jason P; Doyle-Meyers, Lara A; Schiro, Faith; Aye, Pyone P; Lifson,Jeffrey; Beddingfield, Brandon J; Blair, Robert V; Bohm, Rudolf P; Kolls, Jay K; Rappaport, Jay; Hoxie, James A; Maness, Nicholas J
  3. Viruses. 2024, Jul 21; 16(7):
  1. 7.   Generation and characterization of mature hepatocyte organoids for liver metabolic studies
  2. Liu, Yuchen; Zhou, Yaxing; Ahodantin, James; Jin, Yu; Zhu, Juanjuan; Sun,David; Wu,Xiaolin; Su, Lishan; Yang, Yingzi
  3. Journal of Cell Science. 2024, May 15; 137(10):
  1. 8.   Inhibition of HIV-1 release by ADAM metalloproteinase inhibitors
  2. Ireland, Joanna; Segura, Jason; Shi,Genbin; Buchwald, Julianna; Roth, Gwynne; Shen, Thomas Juncheng; Wang, Ruipeng; Ji,Xinhua; Fischer, Elizabeth R; Moir, Susan; Chun, Tae-Wook; Sun, Peter D
  3. Frontiers in Microbiology. 2024, Mar 20; 15: 1385775.
  1. 9.   Multifaceted roles for STAT3 in gammaherpesvirus latency revealed through in vivo B cell knockout models
  2. Hogan, Chad H; Owens, Shana M; Reynoso, Glennys V; Liao, Yifei; Meyer,Thomas; Zelazowska, Monika A; Liu, Bin; Li, Xiaofan; Grosskopf, Anna K; Khairallah, Camille; Kirillov, Varvara; Reich, Nancy C; Sheridan, Brian S; McBride, Kevin M; Gewurz, Benjamin E; Hickman, Heather D; Forrest, J Craig; Krug, Laurie T
  3. mBio. 2024, Jan 03; e0299823.
  1. 10.   Can incorporating genotyping data into efficacy estimators improve efficiency of early phase malaria vaccine trials?
  2. Potter, Gail E; Callier,Viviane; Shrestha, Biraj; Joshi, Sudhaunshu; Dwivedi, Ankit; Silva, Joana C; Laurens, Matthew B; Follmann, Dean A; Deye, Gregory A
  3. Malaria Journal. 2023, Dec 19; 22(1): 383.
  1. 11.   Viral dissemination and immune activation modulate antiretroviral drug levels in lymph nodes of SIV-infected rhesus macaques
  2. Srinivasula,Sharat; Degrange, Paula; Perazzolo, Simone; Bonvillain, Andrew; Tobery, Amanda; Kaplan, Jacob; Jang, Hyukjin; Turnier, Refika; Davies, Michael; Cottrell, Mackenzie; Ho, Rodney J Y; Di Mascio, Michele
  3. Frontiers in Immunology. 2023, Sep 18; 14: 1213455.
  1. 12.   Structure of Vibrio Phage XM1, a Simple Contractile DNA Injection Machine
  2. Wang,Jenny; Fokine, Andrei; Guo, Xinwu; Jiang, Wen; Rossmann, Michael G; Kuhn, Richard J; Luo, Zhu-Hua; Klose, Thomas
  3. Viruses. 2023, Jul 31; 15(8):
  1. 13.   Inhibition of neutral sphingomyelinase 2 impairs HIV-1 envelope formation and substantially delays or eliminates viral rebound
  2. Yoo, Seung-Wan; Waheed,Abdul; Deme, Pragney; Tohumeken, Sehmus; Rais, Rana; Smith, Matthew D; DeMarino, Catherine; Calabresi, Peter A; Kashanchi, Fatah; Freed,Eric; Slusher, Barbara S; Haughey, Norman J
  3. Proceedings of the National Academy of Sciences of the United States of America. 2023, Jul 11; 120(28): e2219543120.
  1. 14.   SARS-CoV-2 IgG Spike antibody levels and avidity in natural infection or following vaccination with mRNA-1273 or BNT162b2 vaccines
  2. Hickey,Thomas; Kemp,Troy; Bullock,Jimmie; Bouk,Aaron; Metz,Jordan; Neish,Abigail; Cherry, James; Lowy, Douglas R; Pinto,Ligia
  3. Human Vaccines & Immunotherapeutics. 2023, Jun 01; 2215677.
  1. 15.   Lymph-Node-Based CD3+ CD20+ Cells Emerge from Membrane Exchange between T Follicular Helper Cells and B Cells and Increase Their Frequency following Simian Immunodeficiency Virus Infection
  2. Samer, Sadia; Chowdhury, Ankita; Wiche Salinas, Tomas Raul; Estrada, Perla M Del Rio; Reuter, Morgan; Tharp, Gregory; Bosinger, Steven; Cervasi, Barbara; Auger, James; Gill, Kiran; Ablanedo-Terrazas, Yuria; Reyes-Teran, Gustavo; Estes, Jacob D; Betts, Michael R; Silvestri, Guido; Paiardini, Mirko
  3. Journal of Virology. 2023, May 23; e0176022.
  1. 16.   Phase 1 trial to model primary, secondary, and tertiary dengue using a monovalent vaccine
  2. Odio, Camila D; Lowman, Kelsey E; Law, Melissa; Aogo, Rosemary A; Hunsberger, Sally; Wood, Brad J; Kassin, Michael; Levy, Elliot; Callier,Viviane; Firdous, Saba; Hasund, Chloe M; Voirin, Charlie; Kattappuram, Robbie; Yek, Christina; Manning, Jessica; Durbin, Anna; Whitehead, Stephen S; Katzelnick, Leah C
  3. BMC infectious diseases. 2023, May 23; 23(1): 345.
  1. 17.   Deep-Learning-Based Whole-Lung and Lung-Lesion Quantification Despite Inconsistent Ground Truth: Application to Computerized Tomography in SARS-CoV-2 Nonhuman Primate Models
  2. Reza, Syed M S; Chu, Winston T; Homayounieh, Fatemeh; Blain, Maxim; Firouzabadi, Fatemeh D; Anari, Pouria Y; Lee, Ji Hyun; Worwa, Gabriella; Finch, Courtney L; Kuhn, Jens H; Malayeri, Ashkan; Crozier,Ian; Wood, Bradford J; Feuerstein, Irwin M; Solomon,Jeffrey
  3. Academic Radiology. 2023, Feb 27;
  1. 18.   Vaccination Ameliorates Cellular Inflammatory Responses in SARS-CoV-2 Breakthrough Infections
  2. Huapaya, Julio A; Higgins, Jeanette; Kanth, Shreya; Demirkale, Cumhur; Gairhe, Salina; Aboye, Etsubdink A; Regenold, David; Sahagun, S J; Pastor, Gloria; Swaim, Doris; Dewar,Robin; Rehman,Tauseef; Highbarger,Helene; Lallemand,Perrine; Laverdure,Sylvain; Adelsberger, Joseph; Rupert,Adam; Li, Willy; Krack, Janell; Teferi, Gebeyehu; Kuruppu, Janaki; Strich, Jeffrey R; Davey, Richard; Childs, Richard; Chertow, Daniel; Kovacs, Joseph A; Barnett, Christopher; Torabi-Parizi, Parizad; Suffredini, Anthony F
  3. The Journal of Infectious Diseases. 2023, Feb 18;
  1. 19.   HIV DNA persists in hepatocytes in people with HIV-hepatitis B co-infection on antiretroviral therapy
  2. Zerbato, Jennifer M; Avihingsanon, Anchalee; Singh, Kasha P; Zhao, Wei; Deleage,Claire; Rosen, Elias; Cottrell, Mackenzie L; Rhodes, Ajantha; Dantanarayana, Ashanti; Tumpach, Carolin; Tennakoon, Surekha; Crane, Megan; Price, David J; Braat, Sabine; Mason, Hugh; Roche, Michael; Kashuba, Angela D M; Revill, Peter A; Audsley, Jennifer; Lewin, Sharon R
  3. EBioMedicine. 2022, Dec 08; 87: 104391.
  1. 20.   Human Dectin-1 deficiency impairs macrophage-mediated defense against phaeohyphomycosis
  2. Drummond, Rebecca A; Desai, Jigar V; Hsu, Amy P; Oikonomou, Vasileios; Vinh, Donald C; Acklin, Joshua A; Abers, Michael S; Walkiewicz, Magdalena A; Anzick, Sarah L; Swamydas, Muthulekha; Vautier, Simon; Natarajan, Mukil; Oler, Andrew J; Yamanaka, Daisuke; Mayer-Barber, Katrin D; Iwakura, Yoichiro; Bianchi, David; Driscoll, Brian; Hauck, Ken; Kline, Ahnika; Viall, Nicholas Sp; Zerbe, Christa S; Ferré, Elise Mn; Schmitt, Monica M; DiMaggio, Tom; Pittaluga, Stefania; Butman, John A; Zelazny, Adrian M; Shea, Yvonne R; Arias, Cesar A; Ashbaugh, Cameron; Mahmood, Maryam; Temesgen, Zelalem; Theofiles, Alexander G; Nigo, Masayuki; Moudgal, Varsha; Bloch, Karen C; Kelly, Sean G; Whitworth, M Suzanne; Rao, Ganesh; Whitener, Cindy J; Mafi, Neema; Gea-Banacloche, Juan; Kenyon, Lawrence C; Miller, William R; Boggian, Katia; Gilbert, Andrea; Sincock, Matthew; Freeman, Alexandra F; Bennett, John E; Hasbun, Rodrigo; Mikelis, Constantinos M; Kwon-Chung, Kyung J; Belkaid, Yasmine; Brown, Gordon D; Lim, Jean K; Kuhns,Doug; Holland, Steven M; Lionakis, Michail S
  3. The Journal of Clinical Investigation. 2022, Nov 15; 132(22):
  1. 21.   Chronic kidney disease (CKD) and associated risk in rural South Africa: a population-based cohort study
  2. Fabian, June; Gondwe, Mwawi; Mayindi, Nokthula; Chipungu, Shingirai; Khoza, Bongekile; Gaylard, Petra; Wade, Alisha N; Gómez-Olivé, F Xavier; Tomlinson, Laurie A; Ramsay, Michele; Tollman, Stephen; Winkler,Cheryl; George, Jaya A; Naicker, Saraladevi
  3. Wellcome Open Research. 2022, Nov 3; 7: 236.
  1. 22.   Immunogenetics associated with severe coccidioidomycosis
  2. Hsu, Amy P; Korzeniowska, Agnieszka; Aguilar, Cynthia C; Gu, Jingwen; Karlins, Eric; Oler, Andrew J; Chen, Gang; Reynoso, Glennys V; Davis, Joie; Chaput, Alexandria; Peng, Tao; Sun, Ling; Lack, Justin B; Bays, Derek J; Stewart, Ethan R; Waldman, Sarah E; Powell, Daniel A; Donovan, Fariba M; Desai, Jigar V; Pouladi, Nima; Long Priel, Debra A; Yamanaka, Daisuke; Rosenzweig, Sergio D; Niemela, Julie E; Stoddard, Jennifer; Freeman, Alexandra F; Zerbe, Christa S; Kuhns, Douglas B; Lussier, Yves A; Olivier, Kenneth N; Boucher, Richard C; Hickman, Heather D; Frelinger, Jeffrey; Fierer, Joshua; Shubitz, Lisa F; Leto, Thomas L; Thompson Iii, George R; Galgiani, John N; Lionakis, Michail S; Holland, Steven M
  3. JCI insight. 2022, Sep 27; e159491.
  1. 23.   Immune correlates of HIV-1 reservoir cell decline in early-treated infants
  2. Hartana, Ciputra Adijaya; Garcia-Broncano, Pilar; Rassadkina, Yelizaveta; Lian, Xiaodong; Jiang, Chenyang; Einkauf, Kevin B; Maswabi, Kenneth; Ajibola, Gbolahan; Moyo, Sikhulile; Mohammed, Terence; Maphorisa, Comfort; Makhema, Joseph; Yuki,Yuko; Martin,Pat; Bennett, Kara; Jean-Philippe, Patrick; Viard,Mathias; Hughes, Michael D; Powis, Kathleen M; Carrington,Mary; Lockman, Shahin; Gao, Ce; Yu, Xu G; Kuritzkes, Daniel R; Shapiro, Roger; Lichterfeld, Mathias
  3. Cell Reports. 2022, Jul 19; 40(3): 111126.
  1. 24.   The Mirasol Evaluation of Reduction in Infections Trial (MERIT): study protocol for a randomized controlled clinical trial
  2. Kasirye, Ronnie; Hume, Heather A; Bloch, Evan M; Lubega, Irene; Kyeyune, Dorothy; Shrestha, Ruchee; Ddungu, Henry; Musana, Hellen Wambongo; Dhabangi, Aggrey; Ouma, Joseph; Eroju, Priscilla; de Lange, Telsa; Tartakovsky, Michael; White, Jodie L; Kakura, Ceasar; Fowler, Mary Glenn; Musoke, Philippa; Nolan, Monica; Grabowski, M Kate; Moulton, Lawrence H; Stramer, Susan L; Whitby,Denise; Zimmerman, Peter A; Wabwire, Deo; Kajja, Isaac; McCullough, Jeffrey; Goodrich, Raymond; Quinn, Thomas C; Cortes, Robert; Ness, Paul M; Tobian, Aaron A R
  3. Trials. 2022, Apr 04; 23(1):
  1. 25.   Trans-ancestral fine-mapping of MHC reveals key amino acids associated with spontaneous clearance of hepatitis C in HLA-DQß1
  2. Valencia, Ana; Vergara, Candelaria; Thio, Chloe L; Vince, Nicolas; Douillard, Venceslas; Grifoni, Alba; Cox, Andrea L; Johnson, Eric O; Kral, Alex H; Goedert, James J; Mangia, Alessandra; Piazzolla, Valeria; Mehta, Shruti H; Kirk, Gregory D; Kim, Arthur Y; Lauer, Georg M; Chung, Raymond T; Price, Jennifer C; Khakoo, Salim I; Alric, Laurent; Cramp, Matthew E; Donfield, Sharyne M; Edlin, Brian R; Busch, Michael P; Alexander, Graeme; Rosen, Hugo R; Murphy, Edward L; Wojcik, Genevieve L; Carrington,Mary; Gourraud, Pierre-Antoine; Sette, Alessandro; Thomas, David L; Duggal, Priya
  3. American journal of human genetics. 2022, Jan 25; 109(2): 299-310.
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